ID:

dsi_26304

 Coordinate:

3l:7226092-7226241 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.4 -34.9 -34.8

Flybase annnotation

exon [3l_7226011_7226091_-]; CDS [3l_7226011_7226091_-]; intron [3l_7226092_7227122_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGGCTTTTCTAATACCAAAAATCTATAGTGAGATTTTCCAAAGTTGGTCTTTAGTTTTGACGAAAGAGCTCTTCGCGAGAAGTACAGGAATATGGTGAATTTCCATATTCTTGAGCAATTTCGTTGCCTTAAAGACCGACTATTTCGAAACAGTTTCGTAATGTAAAAACATTACTAACAATTGAGTGATTCTCCAAAGAACGAAGACGCTGACGGCAAGGACAAGGAGAATTCAAAGGGCGAGGATGA
**************************************************....((((((((((((..(((((((....))))..(((((((((((.......))))))))))))))..)))))))......)))))(((.....))).....(((..(((((((....))))))).)))....(((.....))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 O002
Head
 GSM343915
embryo
..................................TTTTCCAAAGTTGGTCTTTAGTTT................................................................................................................................................................................................ 24 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................TATTCTTGAGCAATTTCGTTGC.......................................................................................................................... 22 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................CGACTATTTCGAAATAGTTGG............................................................................................ 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................TCTCCAAAGAACGAAGACGCTGACGGCA............................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGATTCTCCAAAGAACGAA............................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................ACGAAGACGCTGACGGCAAGG............................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................TTCTCCAAAGAATGAAGACGCTGA.................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TCCAAAGAATGAAGACGCTGACGACAAG............................. 28 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................CGACAAGGACAAGGAGAATTCAAAGGGC........ 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TCCAAAGAACGAAGACGCTGACGGC................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTCCATATTCTTGAGCAATTTCGT............................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................TGACGAAAGAGCTCTTCACGAAAAGT...................................................................................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCCAAAGAACGAAGACGCTGACGGCA............................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGAGTGATTCTCCAAAGAACGAAGACGC....................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TTGAGTGATTCTCCAAAGAATGAAGA.......................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................AAGACCGACTATTGCGA..................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAGAATTCAAAGGGGGA...... 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GTGAGCAATTTCGTTGCC......................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................GGTACGGACAAGGGGAAT................. 18 3 20 0.45 9 0 0 4 0 0 0 5 0 0 0 0
................................................................................................................................................................................................................CGCTGACCGCAAGGA........................... 15 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCACGGACAAGGGGAAT................. 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................GGTACGGACAAGGGGAATT................ 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................TGCCTTAATGAACGACAAT.......................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................AAACAGTTTCGTAATA...................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TTCCGAAAAGATTATGGTTTTTAGATATCACTCTAAAAGGTTTCAACCAGAAATCAAAACTGCTTTCTCGAGAAGCGCTCTTCATGTCCTTATACCACTTAAAGGTATAAGAACTCGTTAAAGCAACGGAATTTCTGGCTGATAAAGCTTTGTCAAAGCATTACATTTTTGTAATGATTGTTAACTCACTAAGAGGTTTCTTGCTTCTGCGACTGCCGTTCCTGTTCCTCTTAAGTTTCCCGCTCCTACT
**************************************************....((((((((((((..(((((((....))))..(((((((((((.......))))))))))))))..)))))))......)))))(((.....))).....(((..(((((((....))))))).)))....(((.....))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR902008
ovaries
.................................................................TCTAGAGAAACGGTCTTCATGT................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0
............................................................................GGTCTTCATGTCCTTATA............................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTGCTACTACCGTTCCTGTGC....................... 22 3 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................GCTTGTGCGACTGCAGTTCTT........................... 21 3 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TGCGACTGCCGCTCC............................ 15 1 10 0.80 8 1 0 0 7 0 0 0
.............................................................................GTCTTCATGTCCTTAT............................................................................................................................................................. 16 1 3 0.67 2 2 0 0 0 0 0 0
........AGATTAAGGTTTTTAG.................................................................................................................................................................................................................................. 16 1 14 0.29 4 4 0 0 0 0 0 0
..............................................................................TCTCCATGTCCTTATA............................................................................................................................................................ 16 1 4 0.25 1 1 0 0 0 0 0 0
............................CACTGTAAAAGGTGTCAAC........................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 1 0 0
.....AAAAGATTATGGTTATT.................................................................................................................................................................................................................................... 17 1 6 0.17 1 1 0 0 0 0 0 0
......AAAGATTATGGTTATT.................................................................................................................................................................................................................................... 16 1 10 0.10 1 1 0 0 0 0 0 0
....................................................................................................................................TTATGGTTGATAAAGCTT.................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................ATGTTTCCCGCTCCTGC. 17 2 15 0.07 1 0 0 0 1 0 0 0
....................................................................................................AATGGTATAAGAAGTCGGTA.................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................CGGTTCCTCTCAAGTTGCC.......... 19 3 17 0.06 1 0 0 0 0 1 0 0
....................................................................................................................................TTCTGGCTGATATAGTT..................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0
..........................................................................TTGATCTTCATGTCCTTATA............................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/23/2015 at 10:46 PM