ID:

dsi_26293

 Coordinate:

3l:1530464-1530721 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.7 -7.1

Flybase annnotation

exon [3l_1530722_1530947_+]; CDS [3l_1530722_1530947_+]; exon [3l_1530337_1530463_+]; CDS [3l_1530337_1530463_+]; intron [3l_1530464_1530721_+]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+
mature
  1. 2l:6866946-6866961 +
  2. dsi_26293  3l:1530602-1530617 +
  3. node_2610:915-930 -
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACGCCGGGCAGCAAGCTCCTGGGTGGAGTATTCGGCAAGAAGGCCAAAGGTAGGTGCCGTGGGGCAGCATCAGTTACCCAGTAAATAACCAATGCCCGACTACCCTGATTAATACAGCACCCCTGCAGATCCGCAGGCTTTTTATTTAGTACTAGCCTCTCACGCTTTTTTTATTGACTAACCAACCCAAAATTGATTTTGTTTTGTGGACCGAGTACGTGCGTCCGTTTGTTTCTTTGTTTGTTTGTGCGCTTGTTGTGTTGAGCGCCTGTCTGAATTTGGCTGCATCCAAGTGAATTCAATGCAGGTGGAGCCCCAGCAGCAGCAGCAGCAAAAACAACAACGCTACAGCGGCAG
********************************************************************************************************************************************************************************************..(((..(((.........(((((((......)).)))))...)))..)))*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 O002
Head
 M023
head
............................................................................................................................................................................................CAAAATTGATTTTGTT.......................................................................................................................................................... 16 0 3 1.67 5 5 0 0 0 0 0 0 0 0
........GCAGCAAGCTCCTGGGTGGAGTATTC.................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAAAAAC................... 22 0 3 1.00 3 0 0 0 0 0 3 0 0 0
...................CTGGGTGGTGTATTCGG.................................................................................................................................................................................................................................................................................................................................. 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TGCGTCCGTTTGTTTCTTT....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................TGGGTGGAGTATTCGGCAAGAAG........................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......GGGCAGCAAGCTCCTGGGTGGA.......................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAAAAACA.................. 18 0 9 0.78 7 0 0 0 0 0 0 0 7 0
.............................................................................................................................................................................................AAAATTGATTTTGTT.......................................................................................................................................................... 15 0 6 0.67 4 4 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CCCTGTCTGAATTTGGCGG........................................................................ 19 2 2 0.50 1 0 0 0 0 0 0 0 0 1
.................................CGGCAAGAAGGCCAAAGGGGGC............................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CTGTCTGAATTTGGC.......................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................TGCGCTTGTGTTGTTGAGC........................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................CCTGCAGATCCGTAGGCGT......................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CGCCTGTCTGAGCTTCGCT......................................................................... 19 3 20 0.15 3 0 1 0 0 0 0 0 0 2
............................................................TGGGGCAGCATCAAT........................................................................................................................................................................................................................................................................................... 15 1 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................CCTGCAGATCCGCTGG............................................................................................................................................................................................................................ 16 1 12 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGTTGTTTCTTTGTT.................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TGATGTGTTGAGCGGCTTT..................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................TTCATTGTTTGTTGGTGC........................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................CTTTCGTCCGTTAGTTTCT......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTGCGGCCCGTCGTTCGAGGACCCACCTCATAAGCCGTTCTTCCGGTTTCCATCCACGGCACCCCGTCGTAGTCAATGGGTCATTTATTGGTTACGGGCTGATGGGACTAATTATGTCGTGGGGACGTCTAGGCGTCCGAAAAATAAATCATGATCGGAGAGTGCGAAAAAAATAACTGATTGGTTGGGTTTTAACTAAAACAAAACACCTGGCTCATGCACGCAGGCAAACAAAGAAACAAACAAACACGCGAACAACACAACTCGCGGACAGACTTAAACCGACGTAGGTTCACTTAAGTTACGTCCACCTCGGGGTCGTCGTCGTCGTCGTTTTTGTTGTTGCGATGTCGCCGTC
***********************************************************************************************************************..(((..(((.........(((((((......)).)))))...)))..)))******************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.....................................................................................TTTTGGTTACGGGCTGATGA............................................................................................................................................................................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................AGATCATGATGGGAGCGTG.................................................................................................................................................................................................. 19 3 4 0.75 3 3 0 0 0 0 0
.........................................................................................................................................................................................................CTATACACCTGGCTGATGCA......................................................................................................................................... 20 3 4 0.50 2 2 0 0 0 0 0
..............................................................................GGTGATTTGTTGGTTACG...................................................................................................................................................................................................................................................................... 18 2 8 0.25 2 0 0 1 0 0 1
.....................................................................................................ATGGGACTGGTTATGTC................................................................................................................................................................................................................................................ 17 2 13 0.23 3 0 0 3 0 0 0
.................................................................................................................................................AGATCATGATGGGAGCGT................................................................................................................................................................................................... 18 3 19 0.21 4 4 0 0 0 0 0
..................................................................TGGTAGTCAAAGTGTCATTTAT.............................................................................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 1 0 0
...............................................TTCCATGCAAGGCCCCCCG.................................................................................................................................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 1 0
...................................................................................................................................................ATCATGATGGGAGCGT................................................................................................................................................................................................... 16 2 18 0.06 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGGAAACAAAGAAACA..................................................................................................................... 16 1 18 0.06 1 0 0 0 1 0 0
........................................................................................................................................................................AGAAATAACTGATTG............................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0
.....................................................................................TATAGGTTACGGGCT.................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:1530414-1530771 + dsi_26293 CACGCCGGGCAGCAAGCTCCTGGGTGGAGTATTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGTGG-GGCAGCATCAG-----T-TACCCAGTAA-ATAACCAATGCCCGACTAC-CCTGATTAATACAGCACCCCTGC---AG--ATCCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCCTCTCACGCTTTTT-T-------------------------------------TATTGACTAACCAACCCA---AAATTGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AG
droSec2 scaffold_2:1646781-1647138 + CACGCCGGGCAGCAAGCTCCTGGGTGGAGTATTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGTGG-CGCAGCATCAG-----T-TACCCAGTGA-ATAACCAATGCCCGACTAC-CCTGATTAATACAGCACCCCTGC---AG--ATCCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCATCTCACGCTTTTT-T-------------------------------------TATTGACTAACCAACCCA---AAATTAATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTACTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AG
dm3 chr3L:1620505-1620866 + CACGCCGGGTAGCAAGCTCCTGGGTGGAGTATTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGTGG-GGCAGCATCAG-----T-TACCCAGTAA-ATAACCAATGCTCGAGTAT-CCTGATTAATACAGCACCCCTGC---AGATATCCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCCTCTCACGCTTTTTTT------------------------------------TTATTGACTAACCAACCCA---AAATTGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AG
droEre2 scaffold_4784:1600072-1600429 + CACGCCGGGCAGCAAGCTTCTGGGTGGAGTATTCGGCAAGAAGGCAAAAGGTA-GG----TGCCGCGT-GGCAACTTCAG-----T-TACCCAGTAA-CTAACCAATGCCTGACCAC-CATAGTTCGTAAAGCACGCCTGC---AG--ATTCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCCTCTCATGCTTTTT-T------------------------------------CTATCGACTAAC----ACA---AAATCGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCAAAGTGAATTCAATGCAGGTGGAGT------------CCCAG-----------CAGCAGCAGCAGCAGCAAAAACA------------------ACAACGCTACAGCGGC---------------AA
droYak3 3L:1571569-1571923 + CACGCCGGGCAGCAAGCTTCTGGGTGGAGTGTTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGCGG-CAGAACTTCAG-----T-TAGCCAGTAA-ATAACCAATGCCTGACCAA-CCAAATTAATACGGCACACCTGC---AG--ATACGCAGGC----------------T--T-T-------TCATTT----AGTACTAGCCTCTCACGCTTCTT-T------------------------------------CTATTGACTAAC----CCA---AATTTGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCGGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AG
droEug1 scf7180000409007:439059-439431 + CACGCCGGGCAGCAAGCTCCTAGGTGGAGTGTTCGGCAAGAAGGCCAAAGGTA-GG----TGCCTCAG-GAAAAGTCCAT-----T-AACCCAGCCA-TTAACAAATGCCGGACTTCCCGTAATTAATACAGCACCCCTGC---TG--ATCCGCAGGT----------------T--TT-------ATTATTT----AGTACTAGCCTCTCACGCTTTTT-T------------------------------------CTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGGACCGAGTAC-------GTTCCTAACCTT-AGTCGGT-CAATGC---------------------------------------CCGTTT--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCCG-----------CAGCATC---AGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AA
droBia1 scf7180000300910:1740035-1740423 + CACGCCGGGCAGCAAGCTGTTGGGTGGAGTGTTCGGCAAGAAGGGCAAAGGTA-AGTAGGTGACTCAG-GAAAAGTCCAT-----T-AACCCAGCCA-TTAGCCAACGCCGGACTTCCTGTAATTAACCCAGCACACCTGC---CA--ATTCGCAGGC----------------C--TTT-------TTATTT----AGTACTAGCCTCTCACGCTTCTT-C---------------------------CTAT-----TTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGAACCGAGTAC-------GTTCGTAACCCA-AGTCGGT-CAATGC---------------------------------------CCGTTTGT------ATTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CCGAATTT-GGCTGCATCCAAGTGAATCCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCGGCAGCA---AAAACA------------------ACAACGCTACAGCGGC------------AGCGG
droTak1 scf7180000415095:158127-158487 - CACGCCGGGCAGCAAGCTACTGGGTGGAGTCTTCGGCAAGAAGGCCAAAGGTA-GG----TGCCCCTAGGAA--TT---------T-AACCCAGCTA-TTAACCAATGCCGGACTTTCTGCTATTAACACAGC------------------------C----------------TTATT-------ATTATTT----AGTACTAGCCACTCACGCTTTTT-T---------------------------CTACTCAT-GTATTGACTAAC----CCA--AAAATTGATTTTGTTTT-GTGGACCGAGTA---------------ACCCCGAGTCGGT-CAATGC---------------------------------------CCGTTTGT------ATTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGTCTCTGAATTTCGGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---ACAACA------------------ACAACGCTACAGCGGC---------------AG
droEle1 scf7180000491249:3959595-3959970 - CACGCCGGGCAGTAAATTGCTGGGTGGCGTGTTCGGGAAGAAGGCCAAAGGTA-GG----TTCCCAAG-GAAAGGTCCA-------------------TTAACCAATGCCGGACTTCCCGTAATTAACAGAGCACTCCTGC---TG--ATCGGCAGGT----------------T--T-TTATTGTATTGTTT----AGTACTAGCCACTCACGCTTTTT-T------------------------------------CTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGGACCGAGTACCGAG---TTTTGTTATCCA-AGTCGGC-CAATGC---------------------------------------CCGTTC--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGTCTCTGAATTT-TGCTGCAACCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCGGCAGCA---AAAACA------------------ACAAAGCTACAGCGGC---------------AG
droRho1 scf7180000776850:329978-330349 - CACGCCGGGCAGTAAGCTGCTGGGTGGTGTTTTCGGCAAAAAGGCCAAAGGTA-GG----TGCCCTAA-GGAATGTCCAA-----T-AACCCAGCTA-TTAACCAATGCCGGACTTCCCGTAATTAACATAGCATCCCTGC---TG--ATCCGCAGGT----------------T--TT-------ATTGTTT----AGTACTAGCCTCTCACGCTTTTT-T------------------------------------CTATTGATTAAC----CCA----AATTGATTTTGTTTT-GTGTACCGAGTAC-------CTTTGTAATCCA-AGTCGGT-CAATGC---------------------------------------CCGTTC--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAG---CAGCA---AAAACA------------------ACAAAGCTACAGCGGC---------------AG
droFic1 scf7180000454113:461849-462225 - CACGCCGGGCAGCAAGTTGCTGGGTGGAGTGTTCGGAAACAAGGCCAAAGGTA-AG----TGCCACAG-GAAGAGTCCT-------------------CTAACCGATGTCGGACCTGCTGTAATTACCAAAGCACCCCTGC---TAA-ATCCGCAGGC----------------TTATTT-------TTATTA----AGTACTAGCCACTCACGCTTTTT-T------------------------------------CTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGGAACGAGTAC-------TTCCTTAACCCA-AGTCGGT-CATTGC---------------------------------------CCGTTTGTTT----GTTTGTTTGTTCGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTCT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGG---------AGCCCCAG-----------CAACAGCAGCAGCAGCAAAGACA------------------ACAAAGCTACAGCGGC---------------AG
droKik1 scf7180000302577:89774-90139 + CACGCCGGGCAGCAAGCTCCTAGGAGGTGTCTTCGGCAAAAAAGCCAAAGGTAAGG----TGTCCCT--CCAATCTCCAG-----TGTTCACAGAGGATTAACCAATGTCGGACTAGGCATAATTAACCCACTACCCCACT---TGAAATCGATACAA----------------T--TT-------ATTGTTT----AGTATTTGCTTCTCACGCTTTTT-A------------------------------------CGATTGACTAAC----CCCAAAGAATTGAA-TTGTATT-G-------AGTTC-------C---CTTACCCC-C-CCAAA-------A----------------------------------------AGTT--------GTTTGTTCGTTTGTTTGTGCGC-TTGTTGTGTGTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGGATTCAATGCAGGTGGAGC------------CCCTC-----------CAGAAACAACAGCA---ACGGCA------------------GCAACGCTACAGCGGC---------------AG
droAna3 scaffold_13337:12496967-12497341 + CACCCCGGGTAGTAAGTTGCTGGGCGGAGTCTTCGGCAAGAAGGCGAAAGGTA-AG----TAGT--GG-CGC-------------------------------------------------CACTAACACCGCACCCCTGT-CCGG--ATCGGAAGGGAAGTAGTATAGTCTGTT--TT-------ATAATTTTACAAGTAC--GCTACTCACGCTTTTT-T----------------------------AAT---T-CAAATGACTAAC----CCG---AAATTGGTTTTGTTTT-GTGGGATGAGTTC-------GATCGTAAC---------------TGC---------------------------------------CCGTTTGTTTGATTGTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCCAAGTGAATTCAATGCAGGTGCAGT------------CCCAG-----------CAGCATCGGCGGCA---ACAACAACAAATACAACAACAACAACAGCGCTACAACGCC---------CACAACAA
droBip1 scf7180000396589:1490831-1491198 - CACACCGGGTAGTAAGTTGCTGGGCGGAGTGTTCGGCAAGAAGGCGAAAGGTA-AG----TAGTGT----------------------------------------------------CGTCACTAACTCCGCACCCCTGC-CCGG--ATCGGTGGGGAATATGTATAGTTTGTT--TT-------ATGATTTTACAATTAC--GCTACTCACGCTTCTT-A-----------------------------AA---T-CGATTGACTAAC----CCG---AGATTGGTTTTGTTTT-GTGGGATGAGTTC-------GATCGTAAC---------------TGC---------------------------------------CCGATTGTTTGATTGTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCCAAGTGAATTCAATGCAGGTGCAGT------------CCCAG-----------CAGCATCGGCGGCA---ACAACAACAAATACAACAACAACAACAGCGCTACAGCGGC---------------AA
dp5 XR_group8:4177494-4177854 + CACGCCCGGTAGCAAGCTCCTGGGGGGCGTGTTTGGCAAGAAGGCCAAAGGTA-TG----TTCCACCG-CGGATCTTCACCCACGTTTTAGCAGTAG-ATAAC-----------------------------------ACTT------------------GTAATACTGATAGTT--G-----TGTATTGTTT----CGT--TAGCTTTTTATCCTCTT---------------------------------------CCTTTGACTAAC----C-A---AATTCCGTCTTGTTTT-GTG-----AGTTC-------CTTTGTAACCAAGAGTCGGCCCAATGC---------------------------------------TCGT---------------TTCGTTTGTTTGTTCGC-TTGTTGT--GTTGAGCACCTGT--TTGGATTT-TGCTGCATTCAAGTAAATTCAACGCAGGTGCAGCCCAAGAAGGAGCTCCGACAACGCTGCAACGGCAACGGCAACG---ACAACG------------------ACAACG--ACAACGAC------------AACGG
droPer2 scaffold_29:413304-413658 + CACGCCCGGTAGCAAGCTCCTGGGGGGCGTGTTTGGCAAGAAGGCCAAAGGTA-GG----TTCAACCG-CGGATCTTCACCCACGTCTTTGCAGTAG-ATAAC-----------------------------------ACTT------------------GTAATACTGATAGTT--G-----TGTATTATTT----CGT--TAGCTTTTTATCCTCTT---------------------------------------CCTTTGACTAAC----C-A---AATTCCGTCTTGTTTT-GTG-----AGTTC-------CTTTGTAACCAAGAGTCGGCCCAATGC---------------------------------------TCGT---------------TTCGTTTGTTTGTTCGC-TTGTTGT--GTTGAGCACCTGT--TTGGATTT-TGCTGCATTCAAGTAAATTCAACGCAGGTGCAGCCCAAGAAGGAGCTCCGACAACGCTGCAACGGCAACGGCAACG---ACAACG------------------ACA--------ACGAC------------AACGG
droWil2 scf2_1100000004762:1317691-1317812 + TGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTGCTTGTTCGTTTTGTTGT--GTTGAGCACCTGT--TTGGATTT-TGCTGCATTTAAGTGAATTCAATCCAGGTGCAAC------------ATCAG-----------CCCCGGCAGT---A---GCAACA---------------------ACGCTTCGACAAC------------AACAA
droVir3 scaffold_13049:5269916-5270049 - CACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTTTGTTTGTCTGTTCGT-TTGTTGT--ATTG-GCGCCTGT--TTGGATTT-AGCTGCATTAAAGTCAATTCGATGCAGTTGCAGC------------CACAG-----------CAGCAGCAGCAG---------------------------------GGCTACAACAACAACAACGACTGCCACAA
droMoj3 scaffold_6680:3634990-3635191 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTATA--------------------------------------TTTTTGACTAAC----T-A---ATTTTTGTTTTGTTAT-CTG-----AGCC-------------------------AAT-------AAGTTGTTA----ACAAACACAAAAAAAAAAAAGAATGCA-CTTC--------GTTTGTTTGTTTGTCTGTTCGT-TTGTTGT--ATTG-GCGCCTGT--TTGGATTT-AGCTGCAATAAAGTCAATTCGATGCAGTTGCAGC------------AACAG-----------CATCAGCAGCAG---------------------------------TGCTACAACAAC---------------A-
droGri2 scaffold_15110:13716297-13716656 + CACACCGGGCAGCAAACTGCTTGGTGGCGTGTTTGCCAAGAAGGCAAAAGGTA-GG----TGTTCTTA-G---------------T-TAGT------------------------TGGTGTGTTTAACAGAAAATGTTTCT---AAA-AACTGTGA--------C------------------------------AAAGCGC--AAAAATAATGCTTTTT-TTATTAATTAAGTTTTGATTGCATTTTGATTTTCAAAAATATGACTAAC----------AGATTGATTTTGTTTTTGTTG------------------TTGTTAACTG-AGTCACT-GGCTGCAAGTTGAAAATACACAAGCACAAAAA------------------A--------GCTAGTTTGTTTGTCTGTTCGT-TTGTTGT--GTTG-GCGCCTGC--TTCGATTT-AGCCGCATTAAAGTCAATTCAACGCGGTTCCAGT------------GC---------------TGAATCAACAACA---ACAACA------------------AAATC---------------------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CACGCCGGGCAGCAAGCTCCTGGGTGGAGTATTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGTGG-GGCAGCATCAG-----T-TACCCAGTAA-ATAACCAATGCCCGACTAC-CCTGATTAATACAGCACCCCTGC---AG--ATCCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCCTCTCACGCTTTTT-T-------------------------------------TATTGACTAACCAACCCA---AAATTGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................CA---AAATTGATTTTGTT.......................................................................................................................................................................................................................................................................................................1631.67500000000005000000
........GCAGCAAGCTCCTGGGTGGAGTATTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-----------CAGCAGCAGCAGCA---AAAAC....................................................2231.00300003000000000000
........................................................................................................................................................................................................................................................................................................................TGCGT------------------------------------------------------------------CCGTTT--------GTTTCTTT........................................................................................................................................................................................1911.00100000000001000000
....................TGGGTGGAGTATTCGGCAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
......GGGCAGCAAGCTCCTGGGTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---AAAACA------------------.................................1890.78700000700000000000
....................................................................................................................................................................................................................................................................................A---AAATTGATTTTGTT.......................................................................................................................................................................................................................................................................................................1560.67400000000004000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGT--CTGAATTT-GGC.....................................................................................................................................1520.50100000000010000000
droSec2
CACGCCGGGCAGCAAGCTCCTGGGTGGAGTATTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGTGG-CGCAGCATCAG-----T-TACCCAGTGA-ATAACCAATGCCCGACTAC-CCTGATTAATACAGCACCCCTGC---AG--ATCCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCATCTCACGCTTTTT-T-------------------------------------TATTGACTAACCAACCCA---AAATTAATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTACTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........AGCAAGCTCCTGGGTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030030
........GCAGCAAGCTCCTGGGTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGT--GTTGAGCGCCTGT--CTG..............................................................................................................................................2311.0010010
........................................................................AGCATCAG-----T-TACCCAGTGA-ATAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.......................................................................................................................................................................................................................TTTTT-T-------------------------------------TATTGACTAACCAACCCA---AAAT.................................................................................................................................................................................................................................................................................................................2811.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTGAATTCAATGCAGGTGGA........................................................................................................2411.0011000
..................CCTGGGTGGAGTATTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
dm3
CACGCCGGGTAGCAAGCTCCTGGGTGGAGTATTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGTGG-GGCAGCATCAG-----T-TACCCAGTAA-ATAACCAATGCTCGAGTAT-CCTGATTAATACAGCACCCCTGC---AGATATCCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCCTCTCACGCTTTTTTT------------------------------------TTATTGACTAACCAACCCA---AAATTGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............AAGCTCCTGGGTGGAGTATTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAAGCTCCTGGGTGGAGTATTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................GTGGACCGAGTAC-GTGCG.................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCGC-TTGTTGT--GTTGAGCGCCTGT--C................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................................................................................................................................................................................................................................................................................................TTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCG...........................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.......................GTGGAGTATTCGGCAAGAAGGCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000
..............................ATTCGGCAAGAAGGCCAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGCCTGT--CTGAATTT-GG......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CGAGTAC-GTGCGT------------------------------------------------------------------CCGTT.........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCCAAGTGAATTCAATGCAGG............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GT..............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................ATACAGCACCCCTGC---AGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGGGTGGAGTATTCGGCAAGAAGGCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCCTGGGTGGAGTATTCGGCAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CGGGTAGCAAGCTCCTGGGTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GAAGGCCAAAGGTA-GG----TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ACCAATGCTCGAGTAT-CCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........GCAAGCTCCTGGGTGGAGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGCAAGCTCCTGGGTGGAGTATTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AAGGCCAAAGGTA-GG----TGCCGTGG-GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................TCCTGGGTGGAGTATTCGGCAAGAAGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTGGAGTATTCGGCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-----------CAGCAGCAGCAGCA---AAAACA------------------AC...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTGTGCGC-TTGTTGT--GTTGAG..........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................TGGGTGGAGTATTCGGCAAGAAGGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TAT-CCTGATTAATACAGCACCCCTGC---AGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTGTTTT-GTGGACCGAGTAC-GTGC..................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGC-TTGTTGT--GTTGAG..........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGTTTGTGCGC-TTGTTGT--GT..............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTGTTTT-GTGGACCGAGTAC-GTGCG.................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..................CCTGGGTGGAGTATTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTGGGTGGAGTATTCGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................AGCACCCCTGC---AGATATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTGTTTGTTTGTGCGT-.........................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TTT--------GTTTCTTTGTTTGTTTGT..............................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------CCGTTT--------GTTTCTTTGTC.....................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---AAAACA------------------.................................1860.1710000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---AAAAC....................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
droEre2
CACGCCGGGCAGCAAGCTTCTGGGTGGAGTATTCGGCAAGAAGGCAAAAGGTA-GG----TGCCGCGT-GGCAACTTCAG-----T-TACCCAGTAA-CTAACCAATGCCTGACCAC-CATAGTTCGTAAAGCACGCCTGC---AG--ATTCGCAGGC----------------T--T-T-------TTATTT----AGTACTAGCCTCTCATGCTTTTT-T------------------------------------CTATCGACTAAC----ACA---AAATCGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCAAAGTGAATTCAATGCAGGTGGAGT------------CCCAG-----------CAGCAGCAGCAGCAGCAAAAACA------------------ACAACGCTACAGCGGC---------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGT------------CCCAG-----------CAGCAG....................................................................1911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGT------------CCCAG-----------CAGCAGCA..................................................................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAAAAAC....................................................1890.1110000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAG-----------CAGCAGCAGCAGCAGCA.........................................................21200.0510000010
droYak3
CACGCCGGGCAGCAAGCTTCTGGGTGGAGTGTTCGGCAAGAAGGCCAAAGGTA-GG----TGCCGCGG-CAGAACTTCAG-----T-TAGCCAGTAA-ATAACCAATGCCTGACCAA-CCAAATTAATACGGCACACCTGC---AG--ATACGCAGGC----------------T--T-T-------TCATTT----AGTACTAGCCTCTCACGCTTCTT-T------------------------------------CTATTGACTAAC----CCA---AATTTGATTTTGTTTT-GTGGACCGAGTAC-GTGCGT------------------------------------------------------------------CCGTTT--------GTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCGGCAGCAGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............CAAGCTTCTGGGTGGAGTGTTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000
...........GCAAGCTTCTGGGTGGAGTGTTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..........AGCAAGCTTCTGGGTGGAGTGTTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
..........AGCAAGCTTCTGGGTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGT--GTTGAGCGCCTGT--CTG..............................................................................................................................................2311.00100000010000
...........GCAAGCTTCTGGGTGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................GTGGAGTGTTCGGCAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GGCTGCATCCAAGTGAATT.....................................................................................................................2111.00101000000000
droEug1
CACGCCGGGCAGCAAGCTCCTAGGTGGAGTGTTCGGCAAGAAGGCCAAAGGTA-GG----TGCCTCAG-GAAAAGTCCAT-----T-AACCCAGCCA-TTAACAAATGCCGGACTTCCCGTAATTAATACAGCACCCCTGC---TG--ATCCGCAGGT----------------T--TT-------ATTATTT----AGTACTAGCCTCTCACGCTTTTT-T------------------------------------CTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGGACCGAGTAC-------GTTCCTAACCTT-AGTCGGT-CAATGC---------------------------------------CCGTTT--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCCG-----------CAGCATC---AGCA---AAAACA------------------ACAACGCTACAGCGGC---------------AASizeHit CountTotal NormTotal
No Reads
droBia1
CACGCCGGGCAGCAAGCTGTTGGGTGGAGTGTTCGGCAAGAAGGGCAAAGGTA-AGTAGGTGACTCAG-GAAAAGTCCAT-----T-AACCCAGCCA-TTAGCCAACGCCGGACTTCCTGTAATTAACCCAGCACACCTGC---CA--ATTCGCAGGC----------------C--TTT-------TTATTT----AGTACTAGCCTCTCACGCTTCTT-C---------------------------CTAT-----TTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGAACCGAGTAC-------GTTCGTAACCCA-AGTCGGT-CAATGC---------------------------------------CCGTTTGT------ATTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CCGAATTT-GGCTGCATCCAAGTGAATCCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCGGCAGCA---AAAACA------------------ACAACGCTACAGCGGC------------AGCGGSizeHit CountTotal NormTotal
No Reads
droTak1
CACGCCGGGCAGCAAGCTACTGGGTGGAGTCTTCGGCAAGAAGGCCAAAGGTA-GG----TGCCCCTAGGAA--TT---------T-AACCCAGCTA-TTAACCAATGCCGGACTTTCTGCTATTAACACAGC------------------------C----------------TTATT-------ATTATTT----AGTACTAGCCACTCACGCTTTTT-T---------------------------CTACTCAT-GTATTGACTAAC----CCA--AAAATTGATTTTGTTTT-GTGGACCGAGTA---------------ACCCCGAGTCGGT-CAATGC---------------------------------------CCGTTTGT------ATTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGTCTCTGAATTTCGGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCAGCAGCA---ACAACA------------------ACAACGCTACAGCGGC---------------AGSizeHit CountTotal NormTotal
No Reads
droEle1
CACGCCGGGCAGTAAATTGCTGGGTGGCGTGTTCGGGAAGAAGGCCAAAGGTA-GG----TTCCCAAG-GAAAGGTCCA-------------------TTAACCAATGCCGGACTTCCCGTAATTAACAGAGCACTCCTGC---TG--ATCGGCAGGT----------------T--T-TTATTGTATTGTTT----AGTACTAGCCACTCACGCTTTTT-T------------------------------------CTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGGACCGAGTACCGAG---TTTTGTTATCCA-AGTCGGC-CAATGC---------------------------------------CCGTTC--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGTCTCTGAATTT-TGCTGCAACCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAGCGGCAGCA---AAAACA------------------ACAAAGCTACAGCGGC---------------AGSizeHit CountTotal NormTotal
No Reads
droRho1
CACGCCGGGCAGTAAGCTGCTGGGTGGTGTTTTCGGCAAAAAGGCCAAAGGTA-GG----TGCCCTAA-GGAATGTCCAA-----T-AACCCAGCTA-TTAACCAATGCCGGACTTCCCGTAATTAACATAGCATCCCTGC---TG--ATCCGCAGGT----------------T--TT-------ATTGTTT----AGTACTAGCCTCTCACGCTTTTT-T------------------------------------CTATTGATTAAC----CCA----AATTGATTTTGTTTT-GTGTACCGAGTAC-------CTTTGTAATCCA-AGTCGGT-CAATGC---------------------------------------CCGTTC--------GTTTGTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCCAAGTGAATTCAATGCAGGTGGAGC------------CCCAG-----------CAGCAG---CAGCA---AAAACA------------------ACAAAGCTACAGCGGC---------------AGSizeHit CountTotal NormTotal
No Reads
droFic1
CACGCCGGGCAGCAAGTTGCTGGGTGGAGTGTTCGGAAACAAGGCCAAAGGTA-AG----TGCCACAG-GAAGAGTCCT-------------------CTAACCGATGTCGGACCTGCTGTAATTACCAAAGCACCCCTGC---TAA-ATCCGCAGGC----------------TTATTT-------TTATTA----AGTACTAGCCACTCACGCTTTTT-T------------------------------------CTATTGACTAAC----CCA---AAATTGATTTTGTTTT-GTGGAACGAGTAC-------TTCCTTAACCCA-AGTCGGT-CATTGC---------------------------------------CCGTTTGTTT----GTTTGTTTGTTCGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTCT--CTGAATTT-GGCTGCATCCAAGTGAATTCAATGCAGGTGGAGG---------AGCCCCAG-----------CAACAGCAGCAGCAGCAAAGACA------------------ACAAAGCTACAGCGGC---------------AGSizeHit CountTotal NormTotal
No Reads
droKik1
CACGCCGGGCAGCAAGCTCCTAGGAGGTGTCTTCGGCAAAAAAGCCAAAGGTAAGG----TGTCCCT--CCAATCTCCAG-----TGTTCACAGAGGATTAACCAATGTCGGACTAGGCATAATTAACCCACTACCCCACT---TGAAATCGATACAA----------------T--TT-------ATTGTTT----AGTATTTGCTTCTCACGCTTTTT-A------------------------------------CGATTGACTAAC----CCCAAAGAATTGAA-TTGTATT-G-------AGTTC-------C---CTTACCCC-C-CCAAA-------A----------------------------------------AGTT--------GTTTGTTCGTTTGTTTGTGCGC-TTGTTGTGTGTTGAGCGCCTGT--CTGAATTT-GGCTGCATCCAAGTGGATTCAATGCAGGTGGAGC------------CCCTC-----------CAGAAACAACAGCA---ACGGCA------------------GCAACGCTACAGCGGC---------------AGSizeHit CountTotal NormTotal
No Reads
droAna3
CACCCCGGGTAGTAAGTTGCTGGGCGGAGTCTTCGGCAAGAAGGCGAAAGGTA-AG----TAGT--GG-CGC-------------------------------------------------CACTAACACCGCACCCCTGT-CCGG--ATCGGAAGGGAAGTAGTATAGTCTGTT--TT-------ATAATTTTACAAGTAC--GCTACTCACGCTTTTT-T----------------------------AAT---T-CAAATGACTAAC----CCG---AAATTGGTTTTGTTTT-GTGGGATGAGTTC-------GATCGTAAC---------------TGC---------------------------------------CCGTTTGTTTGATTGTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCCAAGTGAATTCAATGCAGGTGCAGT------------CCCAG-----------CAGCATCGGCGGCA---ACAACAACAAATACAACAACAACAACAGCGCTACAACGCC---------CACAACAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CACACCGGGTAGTAAGTTGCTGGGCGGAGTGTTCGGCAAGAAGGCGAAAGGTA-AG----TAGTGT----------------------------------------------------CGTCACTAACTCCGCACCCCTGC-CCGG--ATCGGTGGGGAATATGTATAGTTTGTT--TT-------ATGATTTTACAATTAC--GCTACTCACGCTTCTT-A-----------------------------AA---T-CGATTGACTAAC----CCG---AGATTGGTTTTGTTTT-GTGGGATGAGTTC-------GATCGTAAC---------------TGC---------------------------------------CCGATTGTTTGATTGTTTCTTTGTTTGTTTGTGCGC-TTGTTGT--GTTGAGCGCCTGT--CTGAATTT-TGCTGCATCCAAGTGAATTCAATGCAGGTGCAGT------------CCCAG-----------CAGCATCGGCGGCA---ACAACAACAAATACAACAACAACAACAGCGCTACAGCGGC---------------AASizeHit CountTotal NormTotal
No Reads
dp5
CACGCCCGGTAGCAAGCTCCTGGGGGGCGTGTTTGGCAAGAAGGCCAAAGGTA-TG----TTCCACCG-CGGATCTTCACCCACGTTTTAGCAGTAG-ATAAC-----------------------------------ACTT------------------GTAATACTGATAGTT--G-----TGTATTGTTT----CGT--TAGCTTTTTATCCTCTT---------------------------------------CCTTTGACTAAC----C-A---AATTCCGTCTTGTTTT-GTG-----AGTTC-------CTTTGTAACCAAGAGTCGGCCCAATGC---------------------------------------TCGT---------------TTCGTTTGTTTGTTCGC-TTGTTGT--GTTGAGCACCTGT--TTGGATTT-TGCTGCATTCAAGTAAATTCAACGCAGGTGCAGCCCAAGAAGGAGCTCCGACAACGCTGCAACGGCAACGGCAACG---ACAACG------------------ACAACG--ACAACGAC------------AACGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........AGCAAGCTCCTGGGGGGCGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................GGGGGGCGTGTTTGGCAAGAAGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAACGGCAACGGCAACG---.........................................................20190.0510000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGCAACGGCAACG---A........................................................19200.0510100000000
droPer2
CACGCCCGGTAGCAAGCTCCTGGGGGGCGTGTTTGGCAAGAAGGCCAAAGGTA-GG----TTCAACCG-CGGATCTTCACCCACGTCTTTGCAGTAG-ATAAC-----------------------------------ACTT------------------GTAATACTGATAGTT--G-----TGTATTATTT----CGT--TAGCTTTTTATCCTCTT---------------------------------------CCTTTGACTAAC----C-A---AATTCCGTCTTGTTTT-GTG-----AGTTC-------CTTTGTAACCAAGAGTCGGCCCAATGC---------------------------------------TCGT---------------TTCGTTTGTTTGTTCGC-TTGTTGT--GTTGAGCACCTGT--TTGGATTT-TGCTGCATTCAAGTAAATTCAACGCAGGTGCAGCCCAAGAAGGAGCTCCGACAACGCTGCAACGGCAACGGCAACG---ACAACG------------------ACA--------ACGAC------------AACGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................GGCGTGTTTGGCAAGAAGGCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACCTGT--TTGGATTT-TGCT....................................................................................................................................2211.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTGT--TTGGATTT-TGCTGC..................................................................................................................................2211.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAACGGCAACG---ACAAC....................................................20120.172200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCAACG---ACAACG------------------AC...............................19140.071001000
droWil2
TGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTGCTTGTTCGTTTTGTTGT--GTTGAGCACCTGT--TTGGATTT-TGCTGCATTTAAGTGAATTCAATCCAGGTGCAAC------------ATCAG-----------CCCCGGCAGT---A---GCAACA---------------------ACGCTTCGACAAC------------AACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTTTGTTTGTCTGTTCGT-TTGTTGT--ATTG-GCGCCTGT--TTGGATTT-AGCTGCATTAAAGTCAATTCGATGCAGTTGCAGC------------CACAG-----------CAGCAGCAGCAG---------------------------------GGCTACAACAACAACAACGACTGCCACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGT--ATTG-GCGCCTGT--TTGGATT..........................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-----------CAGCAGCAGCAG---------------------------------GGCT.........................1850.201001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-----------CAGCAGCAGCAG---------------------------------GGC..........................18190.051100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------CACAG-----------CAGCAGCAGC................................................................18200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTATA--------------------------------------TTTTTGACTAAC----T-A---ATTTTTGTTTTGTTAT-CTG-----AGCC-------------------------AAT-------AAGTTGTTA----ACAAACACAAAAAAAAAAAAGAATGCA-CTTC--------GTTTGTTTGTTTGTCTGTTCGT-TTGTTGT--ATTG-GCGCCTGT--TTGGATTT-AGCTGCAATAAAGTCAATTCGATGCAGTTGCAGC------------AACAG-----------CATCAGCAGCAG---------------------------------TGCTACAACAAC---------------A-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CACACCGGGCAGCAAACTGCTTGGTGGCGTGTTTGCCAAGAAGGCAAAAGGTA-GG----TGTTCTTA-G---------------T-TAGT------------------------TGGTGTGTTTAACAGAAAATGTTTCT---AAA-AACTGTGA--------C------------------------------AAAGCGC--AAAAATAATGCTTTTT-TTATTAATTAAGTTTTGATTGCATTTTGATTTTCAAAAATATGACTAAC----------AGATTGATTTTGTTTTTGTTG------------------TTGTTAACTG-AGTCACT-GGCTGCAAGTTGAAAATACACAAGCACAAAAA------------------A--------GCTAGTTTGTTTGTCTGTTCGT-TTGTTGT--GTTG-GCGCCTGC--TTCGATTT-AGCCGCATTAAAGTCAATTCAACGCGGTTCCAGT------------GC---------------TGAATCAACAACA---ACAACA------------------AAATC---------------------------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:19 AM