ID:

dsi_26291

Coordinate:

2r:5707984-5708133 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5708134_5708313_-]; exon [2r_5708134_5708313_-]; intron [2r_5706108_5708133_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGATCTCGACGCCGAGGAGAGTCCGCACGCCGCCCCGGTGAACAACACGAGTGAGTATCCCCAACCGACACATCCATACCGATCCTCCTCCATTCCGATTCCCAAGTCCAGACACACATTTGATTCTGAAAGACATTTCGCCTCGATTCCCTGCAATTGGAAAATTGCTGCGCTTGCAGTTATGCAACTCGGTTTCGTATAATAGCGCTATAAATTAGCTTGCATTTCGAAAATGACAACAAATTGCTCT ************************************************............((((((...(((......)))......................(((((((..((....))..))))...)))....(((..(((((.((.......))..)))))..))).(((((....))))).))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.........CGCCGAGGAAAGTCCGGAC..............................................................................................................................................................................................................................	19	2	5	0.40	2	2	0	0	0
......................................TGAACAACACTAGTG.....................................................................................................................................................................................................	15	1	7	0.29	2	0	2	0	0
...........................................................................................................................................................................................................................TTGCATTTCGAAAAT................	15	0	4	0.25	1	0	0	1	0
......................................TGAACAACACTAGTGGG...................................................................................................................................................................................................	17	2	8	0.13	1	0	1	0	0
........................................................................................................................TGATTCTCAAAGACA...................................................................................................................	15	1	11	0.09	1	1	0	0	0
.....................................................................................................CCAGGTCCAGACACA......................................................................................................................................	15	1	13	0.08	1	0	0	1	0
....................................................................................................................................ACATTTCGCCACGAT.......................................................................................................	15	1	16	0.06	1	0	0	0	1
...................................................................................................................................................TCCCTGTAATTGGAA........................................................................................	15	1	19	0.05	1	1	0	0	0
..............................................................................................................................................TCGATTCCCGGCAATGG...........................................................................................	17	2	20	0.05	1	0	0	1	0

Anti-sense strand reads

TCTAGAGCTGCGGCTCCTCTCAGGCGTGCGGCGGGGCCACTTGTTGTGCTCACTCATAGGGGTTGGCTGTGTAGGTATGGCTAGGAGGAGGTAAGGCTAAGGGTTCAGGTCTGTGTGTAAACTAAGACTTTCTGTAAAGCGGAGCTAAGGGACGTTAACCTTTTAACGACGCGAACGTCAATACGTTGAGCCAAAGCATATTATCGCGATATTTAATCGAACGTAAAGCTTTTACTGTTGTTTAACGAGA ************************************************............((((((...(((......)))......................(((((((..((....))..))))...)))....(((..(((((.((.......))..)))))..))).(((((....))))).))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	SRR618934 dsim w501 ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
.................................................................................................TAAGGGTTCGGGTCTGTGT......................................................................................................................................	19	1	1	1.00	1	0	1	0	0	0
.............................................................................................AGGCTAAGTGTTTAGGTCTGT........................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0
..........................................................................................GTCAGCCTAAGGGTTCAG..............................................................................................................................................	18	2	6	0.83	5	2	0	1	2	0
...........................GCCGCGGGGCCCCTTGTT.............................................................................................................................................................................................................	18	2	2	0.50	1	0	0	1	0	0
...........................................................................................TCAGCCTAAGGGTTCAGG.............................................................................................................................................	18	2	7	0.14	1	0	0	0	0	1
..........................................................................................................................TAAGAGTTTCTGTGATGCG.............................................................................................................	19	3	18	0.11	2	1	0	0	1	0
.......CTGCGGCCCCCCTCAG...................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0

Generated: 04/23/2015 at 09:10 PM