dsi_2628

-------------------------------------------------------################################################################################################################################################ AAAGTGGTGGATTATTTAGTAGAAAGTAGCGGAAGGCATTTCCCGATCTGGTAACACTGATTCCAACACTCATTATCGTTCCAAATGAAACGCAAAAAGGTTCAATTTTTATTTTCTTCCACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCTAGGTGCCC ***************************************************************.....................((((((....((((..............))))...))))))................******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	M024 male body	M023 head	SRR902009 testis	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
.........................................................................................................................................ATTAACGTAAAGATGGCTC...........................................	19	0	1	3.00	3	2	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................CTTCCACGTTTTCGGCATTTATATTAAC........................................................	28	0	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................ATTTATATTAACGTAAAGATGGCT............................................	24	0	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................ACACTCATTATCGTTCCAAATG................................................................................................................	22	0	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................TTTATTTTCTTCCACGTTTTCGGCATT.................................................................	27	0	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0
......................................................................................................................................TATATTAACGTAAAGATGGCTCTATA.......................................	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................GATGGCTCTATAGTTTGC.................................	18	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................TTTCGGCATTTATATTAACGTAAAGA.................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................CAATTTTTATTTTCTTCCACGT...........................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TAACGTAAAGATGGCTCTATAG......................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1
................................................................................CCAAATGAAACGCAAAAA.....................................................................................................	18	0	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0
....................................................................................................................................TTTATATTAACGTAAAGATGGCTCTA.........................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................ATATTAACGTGGGGATGGCTC...........................................	21	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................ATAGTTTGCGCGCAAG..........................	16	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................TTTCGGCATTTATATTAACG.......................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATGGCTCTATAGTTTGCGT...............................	19	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................AACAACCAGCACCTAGGTGCCC	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTTTCGGCATTTATATTAACGTAAAGA.................................................	27	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................TTCGGCATTTATATTAACGTAAAG..................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TAACGTAAAGATGGCTCTATAGTT....................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTAACGTAAAGATGGCTCTAT........................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAAGCAAAAACAACCAGCACCTAGGT....	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTTTATTTTCTTCCACGTTTTCGGCATT.................................................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................ATTGTTGGCGCGCAAGCAAGAACA..................	24	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................CAAATGAAACGCAAAAAGGTT.................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................TTTATATTAACGTAAAGATGGCT............................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ATATTAACGTAAAGATGGCT............................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TATATTAACGTAAAGATGGCC............................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TATATTAACGTAAAGATGGCT............................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTTTATTTTCTTCCACGTTTTCGGCA...................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ATTATTTCGGCATTTATATTAAC........................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTAACGTAAAGATGGCTCTATAGTTTG..................................	27	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................AACGTAAAGATGGCTCTATAG......................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................AGTGAAACCCAAAAAGGCTCA...............................................................................................	21	3	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................AAGTCAACCAGCACCTAGT.....	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................TAGTTTGCGATCAAGGAAA......................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0

TTTCACCACCTAATAAATCATCTTTCATCGCCTTCCGTAAAGGGCTAGACCATTGTGACTAAGGTTGTGAGTAATAGCAAGGTTTACTTTGCGTTTTTCCAAGTTAAAAATAAAAGAAGGTGCAAAAGCCGTAAATATAATTGCATTTCTACCGAGATATCAAACGCGCGTTCGTTTTTGTTGGTCGTGGATCCACGGG ******************************************************.....................((((((....((((..............))))...))))))................***************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.....................................................................................................................................................................................TGGGCTTGGATCCACG..	16	2	9	0.11	1	1	0
............................................................................GCAAGGTTGACTTTG............................................................................................................	15	1	11	0.09	1	1	0
........................................................................................................................................AAAACTGGATTTCTACCGAG...........................................	20	3	13	0.08	1	0	1
......................................AGAGGGCTAGGCCATT.................................................................................................................................................	16	2	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:20755150-20755348 +	dsi_2628	AAAGTGGTG-GATTATTTAGTAGAAAGTAGCG-GAA-GGCA--------TT-TCCCG---------ATCTGGTAACACTGATTC---------------CAACA-CTCATTATCGTT-CCAAATGAAACGCAAAAAGGTTCAATTTTTATTTTCTTCC-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCTA-GGTGCCC--
droSec2	scaffold_18:1239797-1239995 +		AAAGTGGTG-GATTATTTAGTAGAAAGTAGCG-GAA-GGCA--------TT-TCCCG---------ATCTGGTAACACTGATTC---------------CAACA-CTCATTATCGTT-CCAAATGAAACGCAAAAAGGTCAAATTTTTATTTTCTTCC-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCGA-GGTGCCC--
dm3	chr2L:21310800-21310997 +		AAAGGGGTGGGATTATTTAGTAGAAAGTAGC---AA-GGCA--------TT-TCCCG---------ATCTGGTAACACTGATTC---------------CAACA-CTCATTACCGTT-CCAAATGAAACGCAAAAAGGTTCAATTGTTATTTTCTCTC-ACGATTTCGGCATTTATATTAACCTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAAGCAGCACCTA-GGTGCCC--
droEre2	scaffold_4845:3187329-3187530 -		AAAGTGGCG-GATTATTTAGTAGAAAGTAGCG-GAA-GCCA--------TT-TCCCA---------ATCTGGTAACACTGATTTCAA------------CAACA-ATCATTATCGTT-CCAAATGAAACGCAAAAAGGTTCAATTTTTATTTTCTCCC-ACGTTTTCGGCATTTATATTAACGTAAATATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCTA-GGTGCCC--
droYak3	2R:1468672-1468873 -		AAAGTTGTG-GATTATTTAGTAAAAAGTAGGA-GAA-GGCA--------TT-CCCGT---------ATCTGGTAACACTAATTCCAA------------CAGCA-CTTATTATCGTT-CCAAATGAAACGCAAAAAGGTTCAAGTTTTATTTTCTCCC-ACGTTTTCAGCAATTGTATTAACGTAAAAATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACTTA-AGTGCCC--
droEug1	scf7180000409063:98383-98557 -		T---------------------------AGCG-TAAAGCCG--------TT-CCCAT---------GGGTGGTAACACTGCAAG---------------CACCA-CTCATTCTCTTT-CCAAATGAAACGCAAAAAGGTCCAATTGTTATTTTCTGCA-AGGTTTTCGGCATTTATATTACCGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACATCCAGCACCTT-GGTGCCCC-
droBia1	scf7180000302422:3621231-3621440 -		AGAGTGGTG-GATTTTTTAGGGGAAGTCCCCG-AAC-GGCAAACGCCGT-TTGCGCC---------CTCTGGTAACACTAAACCCAA------------CAACA-ATCATTATCGTT-CCAAATGAAACGCAAAAAGGTCCAAGTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATGGACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAACCAAGCTGCACCTA-GGTGCCC--
droTak1	scf7180000415871:148162-148361 -		----TAGTG-GAATATCGAT-----------G-GAG-GCCA--------TT-TCCCC---------ACCTGGTAACACCGACCCCAACAACAACAACAACAACA-ACCATTAACGTT-CCAAATGAAACGCAAAAAGGTCCAGTTGTTATTTTCTCCA-ACGTTTTCGGCATTTATACTGACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACCAAACGCACCTA-GGTGCCCC-
droEle1	scf7180000491046:2796336-2796472 -		---------------------------------------------------------------------------------------------------CAACA-GTCATTATCGTT-CCAAATGAAACGCAAAAAGGTCAAAGTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACCAACAGCACCTT-GGTGCCCC-
droRho1	scf7180000767948:17267-17433 -		G----------------------AAA------------GTA--------TC-GCCCC---------AACTGTCCAT-----CCCCAA------------TAACA-ATCATTATCGTT-CCAAATGAAACGCAAAAAGGTCCAACTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACCAACAGCACCTT-GGTGCCCC-
droFic1	scf7180000453932:466757-466893 +		---------------------------------------------------------------------------------------------------CAACA-CTCATTATCGTT-CCAAATGAAACGCAAAAAGGTCCAACTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATCACCGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCTA-GGTGCCCC-
droKik1	scf7180000302273:283934-284129 -		ATAGT------ATATTTTAGTATATTTTTGATGGA----TAAAGGTAT--A-TTTCGATCTGTCCGGCGCGGTC---------------------------ACA-CTCATTACTGTT-CCAAATGAAACGCAAAAAGGTTCAATATTTACTTCCTCCA-GCGATTTCGGCATTTATTTTGACGTAAAGATGGCTCTATAGATTGTGCGCAAGCAAA-TCAAAACGCACCAA-GGTGCCCCA
droAna3	scaffold_12916:10918223-10918371 -		-------------------------------------------------TT-CTCCC---------ACCTGGTCAC-------------------------TCA-ATCACTATAAGC-CCAAATGAAACGCAAAAAGGTCCAGA---TTTTTTATCCA-AAGTTTTCGGCATTTATATTGACGTAAAGATGGCTCTATAGTTTGCGTATTAGCAACAACAACCAGCACCTA-GGTGCCCC-
droBip1	scf7180000396572:577921-578067 -		A------------------------------------------------TT-TTCCC---------ATCTGGTCAC--T-----------------------CA-ATCATTAA-G-C-CCAAATGAAACGCAAAAAGGTCCAGA---TTTTTTATCCA-AAGTTTTCGGCATTTATATTGACGTAAAGATGGCTCTATAGTTTGCGTATCAGCAACAACAAC-CGCACTTA-GGTGCCCC-
dp5	4_group4:3448569-3448694 +		----------------------------------------------------------------------------------------------------------TCATTATCGTT-CCA-ATGAAACGCAAAAAGATACAGT---T-TTTCCTCCAAAAGTTCTCAGCATTTATATTGACGTAAAAATGGCTTTATAGTTTGTGCGCAAGCAACAACAACAAGCACCTA-GGTGCCT--
droPer2	scaffold_10:2477816-2477941 +		----------------------------------------------------------------------------------------------------------TCATTATCGTT-CCA-ATGAAACGCAAAAAGATACAGT---T-TTTCCTCCAAAAGTTCTCAGCATTTATATTGACGTAAAAATGGCTTTATAGTTTGTGCGCAAGCAACAACAACAAGCACCTA-GGTGCCT--
droWil2	scf2_1100000004884:805948-806074 +		-----------------------------------------------------------------------------------------------------------CAGTATCGTTCCCAAATGAAACGCAAAAAGATCAAAA---TATTTTCGTCCGAGGT-TTTTGCATTTATATTAACGTGAAAATGGATTTATAGTTTGTGCGCAAGCAACAAAACACCGCACTTA-GGTGCCC--
droVir3	scaffold_12723:5566430-5566583 -		AA------------------------------------GTA--------GT-TCCGG---------AACACGGAACACC------------------------AGTTCAGTATCGTT-CCAAATGAAACGCAAAAAGGTCCAAA---TATTTTCGCTC-GTGTATTTTGCATTTATATGGAAATAAAAATGGCTTTATAGTTTGCGCGCAAACAAAA-C-ACAAGCACGAACAGTGCCC--
droMoj3	scaffold_6500:11149088-11149218 -		------------------------------------------------------------------------------------------------------CG-TTCAGTATCGTT-CCAAATGAAACGCAAAAAGGTCAACA---TATTTTCTGTC-GTGTATTTCGCATTTATATGGACATAAAAATGGCTTTCTAGTTTGCGCGCAAACAAAA-C-ACAAGCACGAATAGTGCCCAC
droGri2	scaffold_15126:2320440-2320565 -		----------------------------------------------------------------------------------------------------------TCAGTACCGTT-CCAAATGAAACGCAAAAAGGTTCAAT---TATTCTTATCC-GTGTTTTTCGCATTTATATGGACATAATAATGGCTTTCTAGATTGCGCGCAAGCAAA-GCAACAAGCACGAC-AGTGCCC--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAAGTGGTG-GATTATTTAGTAGAAAGTAGCG-GAA-GGCA--------TT-TCCCG---------ATCTGGTAACACTGATTC---------------CAACA-CTCATTATCGTT-CCAAATGAAACGCAAAAAGGTTCAATTTTTATTTTCTTCC-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCTA-GGTGCCC--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................ATTAACGTAAAGATGGCTC..............................................	19	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTTCC-ACGTTTTCGGCATTTATATTAAC...........................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATTTATATTAACGTAAAGATGGCT...............................................	24	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................ACA-CTCATTATCGTT-CCAAATG....................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTATTTTCTTCC-ACGTTTTCGGCATT....................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................TATATTAACGTAAAGATGGCTCTATA..........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................GATGGCTCTATAGTTTGC....................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTTCGGCATTTATATTAACGTAAAGA....................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................CAATTTTTATTTTCTTCC-ACGT..............................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAACGTAAAGATGGCTCTATAG.........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................CCAAATGAAACGCAAAAA.........................................................................................................	18	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTATATTAACGTAAAGATGGCTCTA............................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAGTTTGCGCGCAAG.............................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTTCGGCATTTATATTAACG..........................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATGGCTCTATAGTTTGCGT..................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................AACAACCAGCACCTA-GGTGCCC--	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TTTTCGGCATTTATATTAACGTAAAGA....................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................TTCGGCATTTATATTAACGTAAAG.....................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TAACGTAAAGATGGCTCTATAGTT.......................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTAACGTAAAGATGGCTCTAT...........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................CAAGCAAAAACAACCAGCACCTA-GGT......	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTTTATTTTCTTCC-ACGTTTTCGGCATT....................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................CAAATGAAACGCAAAAAGGTT.....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTATATTAACGTAAAGATGGCT...............................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATATTAACGTAAAGATGGCT...............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TATATTAACGTAAAGATGGCC...............................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TATATTAACGTAAAGATGGCT...............................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTTTATTTTCTTCC-ACGTTTTCGGCA......................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTAACGTAAAGATGGCTCTATAGTTTG.....................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................AACGTAAAGATGGCTCTATAG.........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

AAAGTGGTG-GATTATTTAGTAGAAAGTAGCG-GAA-GGCA--------TT-TCCCG---------ATCTGGTAACACTGATTC---------------CAACA-CTCATTATCGTT-CCAAATGAAACGCAAAAAGGTCAAATTTTTATTTTCTTCC-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCGA-GGTGCCC--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................AACAACCAGCACCGA-GGT......	18	2	1.50	3	0	0	3	0
............................................................................................................................................................................................ATGGCTCTATAGTTTGCGC..................................	19	2	1.00	2	0	0	2	0
..........................................................................................................................................TCAAATTTTTATTTTCTTCC-ACGTT.............................................................................	25	2	0.50	1	1	0	0	0
................................................................................................................................................................................ATTAACGTAAAGATGGCTCTA............................................	21	2	0.50	1	0	1	0	0
...............................................................................................................................................................................TATTAACGTAAAGATGGCT...............................................	19	2	0.50	1	0	0	0	1
...................................................................................................................................................................................AACGTAAAGATGGCTCTATAGTT.......................................	23	2	0.50	1	1	0	0	0
.............................................................................................................................................AATTTTTATTTTCTTCC-ACGTTTTCGGC.......................................................................	28	2	0.50	1	1	0	0	0
.......................................................................................................................CAAATGAAACGCAAAAAGGTCAAA..................................................................................................	24	2	0.50	1	0	0	1	0
....................................................................................................................................................................................................ATAGTTTGCGCGCAAGCAAA.........................	20	2	0.50	1	0	1	0	0
...........................................................................................................................................................................................GATGGCTCTATAGTTTGCGCGC................................	22	2	0.50	1	0	0	1	0
......................................................................................................................................................................................GTAAAGATGGCTCTATAGTTTGCGCGC................................	27	2	0.50	1	0	0	1	0
..........................................................................................................................................................................ATTTATATTAACGTAAAGATGGCT...............................................	24	2	0.50	1	0	1	0	0
......................................................................................................................CCAAATGAAACGCAAAAAGGT......................................................................................................	21	2	0.50	1	0	0	1	0
....................................................................................................................T-CCAAATGAAACGCAAAA..........................................................................................................	18	2	0.50	1	0	0	1	0
......................................................................................................................................................................................GTAAAGATGGCTCTATAGTTTGCGC..................................	25	2	0.50	1	0	1	0	0
.............................................................................................................................................................................TATATTAACGTAAAGATGGCTCTA............................................	24	2	0.50	1	0	0	0	1
............................................................................................................................................................................................................CGCGCAAGCAAAAACAACCAGCAC.............	24	2	0.50	1	0	0	0	1
...................................................................................................................................................TATTTTCTTCC-ACGTTTTCGG........................................................................	21	2	0.50	1	1	0	0	0
..............................................................................................................................................................................ATATTAACGTAAAGATGGCT...............................................	20	2	0.50	1	0	0	1	0
...................................................................................................................................................................................AACGTAAAGATGGCTCTATA..........................................	20	2	0.50	1	0	1	0	0
..........................................................................................................................................................................ATTTATATTAACGTAAAGATGGCTCT.............................................	26	2	0.50	1	1	0	0	0
...........................................................................................................................................................................TTTATATTAACGTAAAGATGGC................................................	22	2	0.50	1	0	0	1	0
................................................................................................................................................................................................CTCTATAGTTTGCGCGCAAGC............................	21	2	0.50	1	0	0	1	0
..................................................................................................................GTT-CCAAATGAAACGCAAAAAGGTCA....................................................................................................	26	2	0.50	1	0	1	0	0
..................................................................................................................................................................................................CTATAGTTTGCGCGCAAGCA...........................	20	2	0.50	1	0	0	0	1
..................................................................................................................................................................................................................AGCAAAAACAACCAGCACCGA-GGT......	24	2	0.50	1	0	0	1	0

dm3

AAAGGGGTGGGATTATTTAGTAGAAAGTAGC---AA-GGCA--------TT-TCCCG---------ATCTGGTAACACTGATTC---------------CAACA-CTCATTACCGTT-CCAAATGAAACGCAAAAAGGTTCAATTGTTATTTTCTCTC-ACGATTTCGGCATTTATATTAACCTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAAGCAGCACCTA-GGTGCCC--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................CGCAAAAAGGTTCAATTG...............................................................................................	18	1	37.00	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	1	0	0	3	0	4	5	0	1	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GCAAAAAGGTTCAATTGT..............................................................................................	18	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATGAAACGCAAAAAGGT......................................................................................................	18	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................TAAAGATGGCTCTATAGTTTGCGCG.................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................GATGGCTCTATAGTTTGCGCG.................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0
..........................................................................................................................................................TCTC-ACGATTTCGGCATTTATATT..............................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ACCGTT-CCAAATGAAACG...............................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................T-TCCCG---------ATCTGGTAACACTGATT..............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTACCGTT-CCAAATGAAACGC..............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GTT-CCAAATGAAACGCAAAAAGGTTCAAT.................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGATGGCTCTATAGTTTGCGC..................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATGAAACGCAAAAAGGTTCA...................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CTCTATAGTTTGCGCGCAAG.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TTCGGCATTTATATTAACCTAAAGAT...................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGCAGCACCTA-GGTGCCC--	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................T-CCAAATGAAACGCAAA...........................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droEre2

AAAGTGGCG-GATTATTTAGTAGAAAGTAGCG-GAA-GCCA--------TT-TCCCA---------ATCTGGTAACACTGATTTCAA------------CAACA-ATCATTATCGTT-CCAAATGAAACGCAAAAAGGTTCAATTTTTATTTTCTCCC-ACGTTTTCGGCATTTATATTAACGTAAATATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCTA-GGTGCCC--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................TTTATTTTCTCCC-ACGTTTTCGGC.......................................................................	24	1	2.00	2	1	1	0	0	0	0	0
..............................................................................................................................................................................ATATTAACGTAAATATGGCT...............................................	20	1	2.00	2	1	1	0	0	0	0	0
....................................................................................................................................................ATTTTCTCCC-ACGTTTTCGGC.......................................................................	21	1	2.00	2	1	0	0	1	0	0	0
......................................................................................................................................................................................GTAAATATGGCTCTATAGT........................................	19	1	2.00	2	1	0	0	0	0	1	0
..........................................................................................................................................................................................ATATGGCTCTATAGTTTGCGCGCAAGC............................	27	1	2.00	2	0	0	0	0	0	2	0
.............................................................................................................................................................................................TGGCTCTATAGTTTGCGCGCA...............................	21	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................................................................TCAATTTTTATTTTCTCCC-ACGTTT............................................................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................TTATATTAACGTAAATATGGCT...............................................	22	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................AATGAAACGCAAAAAGGT......................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................TTAACGTAAATATGGCTCTATA..........................................	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................TT-CCAAATGAAACGCAAAAAGGTT.....................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................TCTATAGTTTGCGCGCAAG.............................	19	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................TAACGTAAATATGGCTCT.............................................	18	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................TCTATAGTTTGCGCGCAAGCAAA.........................	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................AATATGGCTCTATAGTTTGCGC..................................	22	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................TTTTTATTTTCTCCC-ACGTTTTCGGCAT.....................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................ATCATTATCGTT-CCAAATGA...................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................CCAAATGAAACGCAAAAAGGTT.....................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................TTCGGCATTTATATTAACGT.........................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................ATATGGCTCTATAGTTTGCGCGCA...............................	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................TTTCTCCC-ACGTTTTCGGCA......................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................CTCTATAGTTTGCGCGCAAGC............................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................CTATAGTTTGCGCGCAAG.............................	18	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................ATAGTTTGCGCGCAAGCAAAA........................	21	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................AATATGGCTCTATAGTTTGCGCGCAA..............................	26	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................TATATTAACGTAAATATGGCT...............................................	21	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................ATATGGCTCTATAGTTTGCGCGC................................	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................ATTTCAA------------CAACA-ATCATTATCGT.............................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................CTATAGTTTGCGCGCAAGCAAA.........................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................TAACGTAAATATGGCTCTATAGTT.......................................	24	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................A-ATCATTATCGTT-CCAAATGA...................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................GTT-CCAAATGAAACGCAAAAAGGTTC....................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................ACGTAAATATGGCTCTATAGTTTGCG...................................	26	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................ATATGGCTCTATAGTTTGCGC..................................	21	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................ATTAACGTAAATATGGCTCTATAGT........................................	25	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................TTTCGGCATTTATATTAACGTA........................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................ATATTAACGTAAATATGGCTCT.............................................	22	1	1.00	1	0	1	0	0	0	0	0

droYak3

AAAGTTGTG-GATTATTTAGTAAAAAGTAGGA-GAA-GGCA--------TT-CCCGT---------ATCTGGTAACACTAATTCCAA------------CAGCA-CTTATTATCGTT-CCAAATGAAACGCAAAAAGGTTCAAGTTTTATTTTCTCCC-ACGTTTTCAGCAATTGTATTAACGTAAAAATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACTTA-AGTGCCC--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................TTTCAGCAATTGTATTAAC...........................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TGTATTAACGTAAAAATGGCTCTATAGT........................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTTCAGCAATTGTATTAACGT.........................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................TTTCAGCAATTGTATTAACGTAAA......................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................GTTCAAGTTTTATTTTCTCCC-ACGT..............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................GCAAAAAGGTTCAAGTTTT.............................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AAAATGGCTCTATAGTTTGCGCGCAAGC............................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................CGCAAAAAGGTTCAAGTTTTATTT.........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TGTATTAACGTAAAAATGGCTCTAT...........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTTCAGCAATTGTATTAACGTAAAA.....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AGTTTTATTTTCTCCC-ACGT..............................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATGGCTCTATAGTTTGCGC..................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................ATTAACGTAAAAATGGCTCTATAGT........................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AAAATGGCTCTATAGTTTGCGCGCA...............................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................AACAACCAGCACTTA-AGT......	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................CAAGTTTTATTTTCTCCC-AC................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GTTTTCAGCAATTGTATTAAC...........................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTATAGTTTGCGCGCAAGC............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................ATGGCTCTATAGTTTGCGCGCAAGC............................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................GTT-CCAAATGAAACGCAAAAAGGTT.....................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................TTTTCTCCC-ACGTTTTCAGC.......................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACGCAAAAAGGTTCAAGT................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................AACAACCAGCACTTA-AGTGCCC--	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TATCGTT-CCAAATGAAACGCAAAAAGG.......................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TTGTATTAACGTAAAAATG..................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................TTTCTCCC-ACGTTTTCAGCAAT....................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTTCAGCAATTGTATTAACGTA........................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CTCTATAGTTTGCGCGCAAGCAAA.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACGCAAAAAGGTTCAAGT................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGCTCTATAGTTTGCGCGCAAGCAAA.........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGCGCGCAAGCAAAAACAACCAGCA..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................T-CCAAATGAAACGCAAAAAG........................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AAAACAACCAGCACTTA-AGT......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGCTCTATAGTTTGCGCGC................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................ATTGTATTAACGTAAAAATGGCTCTAT...........................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATTTTCTCCC-ACGTTTTCAGCAAT....................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................CAAATGAAACGCAAAAAGGT......................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

T---------------------------AGCG-TAAAGCCG--------TT-CCCAT---------GGGTGGTAACACTGCAAG---------------CACCA-CTCATTCTCTTT-CCAAATGAAACGCAAAAAGGTCCAATTGTTATTTTCTGCA-AGGTTTTCGGCATTTATATTACCGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACATCCAGCACCTT-GGTGCCCC-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGAGTGGTG-GATTTTTTAGGGGAAGTCCCCG-AAC-GGCAAACGCCGT-TTGCGCC---------CTCTGGTAACACTAAACCCAA------------CAACA-ATCATTATCGTT-CCAAATGAAACGCAAAAAGGTCCAAGTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATGGACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAACCAAGCTGCACCTA-GGTGCCC--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

----TAGTG-GAATATCGAT-----------G-GAG-GCCA--------TT-TCCCC---------ACCTGGTAACACCGACCCCAACAACAACAACAACAACA-ACCATTAACGTT-CCAAATGAAACGCAAAAAGGTCCAGTTGTTATTTTCTCCA-ACGTTTTCGGCATTTATACTGACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACCAAACGCACCTA-GGTGCCCC-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------------------------------------------------------------------------------------------CAACA-GTCATTATCGTT-CCAAATGAAACGCAAAAAGGTCAAAGTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACCAACAGCACCTT-GGTGCCCC-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

G----------------------AAA------------GTA--------TC-GCCCC---------AACTGTCCAT-----CCCCAA------------TAACA-ATCATTATCGTT-CCAAATGAAACGCAAAAAGGTCCAACTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATTAACGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACCAACAGCACCTT-GGTGCCCC-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

---------------------------------------------------------------------------------------------------CAACA-CTCATTATCGTT-CCAAATGAAACGCAAAAAGGTCCAACTGTTATTTTCTCCA-ACGTTTTCGGCATTTATATCACCGTAAAGATGGCTCTATAGTTTGCGCGCAAGCAAAAACAACCAGCACCTA-GGTGCCCC-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATAGT------ATATTTTAGTATATTTTTGATGGA----TAAAGGTAT--A-TTTCGATCTGTCCGGCGCGGTC---------------------------ACA-CTCATTACTGTT-CCAAATGAAACGCAAAAAGGTTCAATATTTACTTCCTCCA-GCGATTTCGGCATTTATTTTGACGTAAAGATGGCTCTATAGATTGTGCGCAAGCAAA-TCAAAACGCACCAA-GGTGCCCCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

-------------------------------------------------TT-CTCCC---------ACCTGGTCAC-------------------------TCA-ATCACTATAAGC-CCAAATGAAACGCAAAAAGGTCCAGA---TTTTTTATCCA-AAGTTTTCGGCATTTATATTGACGTAAAGATGGCTCTATAGTTTGCGTATTAGCAACAACAACCAGCACCTA-GGTGCCCC-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................TTTTATCCA-AAGTTTTCGGC.......................................................................	20	1	3.00	3	0	3	0	0	0	0
......................................................................................................................................................................................GTAAAGATGGCTCTATAGTTTGCGT..................................	25	1	3.00	3	0	2	0	0	1	0
...........................................................................................................................................................................................GATGGCTCTATAGTTTGCGTATTAG.............................	25	1	2.00	2	1	0	0	0	0	1
..................................................................................................................................................................................................CTATAGTTTGCGTATTAGC............................	19	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................AAAGATGGCTCTATAGTTTGCGT..................................	23	1	2.00	2	0	0	1	0	1	0
.................................................................................................................................................................................................TCTATAGTTTGCGTATTAGC............................	20	1	2.00	2	0	1	0	0	0	1
.........................................................................................................................................................................................AAGATGGCTCTATAGTTTGCGT..................................	22	1	2.00	2	1	0	0	0	1	0
...................................................................................................................................................TTTTTTATCCA-AAGTTTTCGGCATT....................................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................GA---TTTTTTATCCA-AAGTTTTCGG........................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................GGCTCTATAGTTTGCGTATTAG.............................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................TTGACGTAAAGATGGCTCT.............................................	19	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................TATTAGCAACAACAACCAGCACCTA-GG.......	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................AGCAACAACAACCAGCACCTA-GGC......	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................AACAACCAGCACCTA-GGTGCCCC-	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................TTGACGTAAAGATGGCTCTATAGT........................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................CAACCAGCACCTA-GGTGCCC..	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................ACAACAACCAGCACCTA-GGTGCCCC-	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................AGTTTGCGTATTAGCAACAACAACCAG................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................TTGCGTATTAGCAACAACAACC..................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................TTAGCAACAACAACCAGCACCTA-GG.......	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................GTAAAGATGGCTCTATAGTTTGCGTAT................................	27	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................TTATATTGACGTAAAGATGGCTCTAT...........................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................TTATATTGACGTAAAGATGGCTCT.............................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................AAAGGTCCAGA---TTTTTTATCCA-AAGTT.............................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................CTATAGTTTGCGTATTAGCA...........................	20	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................TGCGTATTAGCAACAACAACCAGC...............	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................AAGC-CCAAATGAAACGCAAAAAGG.......................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................GA---TTTTTTATCCA-AAGTTTTCGGC.......................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................AAGC-CCAAATGAAACGCAAA...........................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................GTAAAGATGGCTCTATAGTTTGC....................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................ATGGCTCTATAGTTTGCGTATTAGC............................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................CGCAAAAAGGTCCAGA---TTTTTT........................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................AAGATGGCTCTATAGTTTGCGTA.................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................GTATTAGCAACAACAACCAGCACCT...........	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TTTTTATCCA-AAGTTTTCGGCA......................................................................	22	1	1.00	1	0	0	0	1	0	0
...............................................................................................................................................A---TTTTTTATCCA-AAGTTTTCGGCAT.....................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................ATTAGCAACAACAACCAGCACCTA-GGT......	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................ATATTGACGTAAAGATGGCT...............................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TGCGTATTAGCAACAACAACCAG................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................GA---TTTTTTATCCA-AAGTTTTCGGCAT.....................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................AAATGAAACGCAAAAAGAC......................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

A------------------------------------------------TT-TTCCC---------ATCTGGTCAC--T-----------------------CA-ATCATTAA-G-C-CCAAATGAAACGCAAAAAGGTCCAGA---TTTTTTATCCA-AAGTTTTCGGCATTTATATTGACGTAAAGATGGCTCTATAGTTTGCGTATCAGCAACAACAAC-CGCACTTA-GGTGCCCC-	Size	Hit Count	Total Norm	Total
No Reads

dp5

----------------------------------------------------------------------------------------------------------TCATTATCGTT-CCA-ATGAAACGCAAAAAGATACAGT---T-TTTCCTCCAAAAGTTCTCAGCATTTATATTGACGTAAAAATGGCTTTATAGTTTGTGCGCAAGCAACAACAACAAGCACCTA-GGTGCCT--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................CGCAAGCAACAACAACAAGC...............	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................TATATTGACGTAAAAATGGCTTT.............................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................ATACAGT---T-TTTCCTCCAAAA................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCAGCATTTATATTGACGTAAAAA....................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................CTCAGCATTTATATTGACGTAAAAA....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................GTT-CCA-ATGAAACGCAAAAA.........................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTATAGTTTGTGCGCAAGCAA..........................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................TATAGTTTGTGCGCAAGCAACAA.......................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................AAGATACAGT---T-TTTCCTCCAAAAGTT.............................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAAAATGGCTTTATAGTTT......................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TTCCTCCAAAAGTTCTCAGCATTTATAT...............................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GCTTTATAGTTTGTGCGCAAGCAAC.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCAGCATTTATATTGACGTAAAAAT...................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GCGCAAGCAACAACAACAA.................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGCTTTATAGTTTGTGCGCAAG.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTGACGTAAAAATGGCTTT.............................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TTATATTGACGTAAAAATGGCTTT.............................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGGCTTTATAGTTTGTGCGCAAGCA...........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CGTAAAAATGGCTTTATAGTTT......................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................ATACAGT---T-TTTCCTCCAAA.................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAGTTTGTGCGCAAGCAA..........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAGTTTGTGCGCAAGCAACA........................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................TATATTGACGTAAAAATGGC................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................ATGGCTTTATAGTTTGTGCGCAAG.............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATGGCTTTATAGTTTGTGCGCAAGCAAC.........................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................AAAAAGATACAGT---T-TTTCCTCCA...................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTATAGTTTGTGCGCAAGCAAC.........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAGTTTGTGCGCAAGCAACAAC......................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................ATGAAACGCAAAAAGATACAGT---..............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TTTCCTCCAAAAGTTCTCAGCATTT...................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TTCCTCCAAAAGTTCTCAGCA......................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................GTT-CCA-ATGAAACGCAAAAAGAT......................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................GATACAGT---T-TTTCCTCCAAA.................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

----------------------------------------------------------------------------------------------------------TCATTATCGTT-CCA-ATGAAACGCAAAAAGATACAGT---T-TTTCCTCCAAAAGTTCTCAGCATTTATATTGACGTAAAAATGGCTTTATAGTTTGTGCGCAAGCAACAACAACAAGCACCTA-GGTGCCT--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................TTATATTGACGTAAAAATGGC................................................	21	1	2.00	2	1	0	0	0	1	0
.................................................................................................................................................................................................TTTATAGTTTGTGCGCAAGCAACA........................	24	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................CGCAAGCAACAACAACAAG................	19	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................TGGCTTTATAGTTTGTGCGCAAG.............................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................ATATTGACGTAAAAATGGCTTT.............................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................ATATTGACGTAAAAATGGCT...............................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................TTATATTGACGTAAAAATGGCTTT.............................................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................TTATAGTTTGTGCGCAAGCAACA........................	23	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................ATAGTTTGTGCGCAAGCAACAA.......................	22	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................TTTATATTGACGTAAAAATGGCTT..............................................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................GGCTTTATAGTTTGTGCGCAAG.............................	22	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................ATATTGACGTAAAAATGGCTT..............................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................ATGGCTTTATAGTTTGTGCGCAAGC............................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................TATAGTTTGTGCGCAAGCA...........................	19	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................GCTTTATAGTTTGTGCGCAAG.............................	21	1	1.00	1	0	1	0	0	0	0

droWil2

-----------------------------------------------------------------------------------------------------------CAGTATCGTTCCCAAATGAAACGCAAAAAGATCAAAA---TATTTTCGTCCGAGGT-TTTTGCATTTATATTAACGTGAAAATGGATTTATAGTTTGTGCGCAAGCAACAAAACACCGCACTTA-GGTGCCC--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................ATTTTCGTCCGAGGT-TTTTGC.......................................................................	21	1	4.00	4	0	0	2	2	0
...............................................................................................................................................A---TATTTTCGTCCGAGGT-TTTTGC.......................................................................	23	1	3.00	3	0	0	0	3	0
..................................................................................................................................................................................TAACGTGAAAATGGATTTATAGTTT......................................	25	1	3.00	3	0	0	1	2	0
..............................................................................................................................................AA---TATTTTCGTCCGAGGT-T............................................................................	19	1	3.00	3	0	0	3	0	0
............................................................................................................................................................................................ATGGATTTATAGTTTGTGCGCAAGCAAC.........................	28	1	2.00	2	1	0	1	0	0
..................................................................................................................................................................................TAACGTGAAAATGGATTTATAGT........................................	23	1	2.00	2	0	0	1	1	0
........................................................................................................................................................................................GAAAATGGATTTATAGTTT......................................	19	1	2.00	2	0	0	0	2	0
............................................................................................................................................................................TTATATTAACGTGAAAATGGATTT.............................................	24	1	2.00	2	0	1	1	0	0
........................................................................................................................................................................................GAAAATGGATTTATAGTTTGTGCGCAA..............................	27	1	2.00	2	0	1	0	1	0
....................................................................................................................................................................................................................CAACAAAACACCGCACTTA-GGT......	22	1	2.00	2	0	0	0	2	0
...........................................................................................................................................................................................AATGGATTTATAGTTTGTGCGCAAGC............................	26	1	2.00	2	0	0	2	0	0
.....................................................................................................................................................................................CGTGAAAATGGATTTATAGTTTGTG...................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................TTTATAGTTTGTGCGCAA..............................	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................ATGGATTTATAGTTTGTGCGCAAGC............................	25	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................TAGTTTGTGCGCAAGCAACA........................	20	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................ATTTATATTAACGTGAAAATGG.................................................	22	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................TTATAGTTTGTGCGCAAGC............................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................GTCCGAGGT-TTTTGCATTTATAT...............................................................	23	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................TTAACGTGAAAATGGATTTATAGT........................................	24	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................ATTTATATTAACGTGAAAATGGATTTATA..........................................	29	1	1.00	1	0	1	0	0	0
...................................................................................................................................................TATTTTCGTCCGAGGT-TTTTG........................................................................	21	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................GTGAAAATGGATTTATAGTTT......................................	21	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................GGATTTATAGTTTGTGCGCAAG.............................	22	1	1.00	1	0	1	0	0	0
...................................................................................................................................................TATTTTCGTCCGAGGT-TTTTGC.......................................................................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................TCAAAA---TATTTTCGTCCGAGGT-TTTTG........................................................................	27	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................GAAAATGGATTTATAGTT.......................................	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................GAAAATGGATTTATAGTTTGTG...................................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................GGATTTATAGTTTGTGCGCAAGC............................	23	1	1.00	1	0	1	0	0	0
...........................................................................................................................................CAAAA---TATTTTCGTCCGAGGT-TTTTGC.......................................................................	27	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................TTATAGTTTGTGCGCAAGCAACA........................	23	1	1.00	1	0	0	0	0	1
...................................................................................................................................................TATTTTCGTCCGAGGT-TTTTGCA......................................................................	23	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................AAATGGATTTATAGTTTGTGC..................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................GTTCCCAAATGAAACGCA.............................................................................................................	18	1	1.00	1	0	1	0	0	0
..............................................................................................................TATCGTTCCCAAATGAAACGCAAAAAGA.......................................................................................................	28	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................TTTTCGTCCGAGGT-TTTTG........................................................................	19	1	1.00	1	1	0	0	0	0
........................................................................................................................................GATCAAAA---TATTTTCGTCCGAGGT-.............................................................................	24	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................TATATTAACGTGAAAATGGA................................................	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................GAAAATGGATTTATAGTTTGTGC..................................	23	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................TGGATTTATAGTTTGTGCGCAAGC............................	24	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................ATTAACGTGAAAATGGATTTATAGTT.......................................	26	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................TTCGTCCGAGGT-TTTTGCATTTATATTA.............................................................	28	1	1.00	1	0	0	0	1	0
.............................................................................................................................................AAA---TATTTTCGTCCGAGGT-TTTTGCA......................................................................	26	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................TAACGTGAAAATGGATTTATAGTT.......................................	24	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................ATAGTTTGTGCGCAAGCA...........................	18	1	1.00	1	0	0	0	0	1
.........................................................................................................................................ATCAAAA---TATTTTCGTCCGAGGT-TTTTG........................................................................	28	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................AATGGATTTATAGTTTGTG...................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................A---TATTTTCGTCCGAGGT-TTTT.........................................................................	21	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................AATGGATTTATAGTTTGTGCGC................................	22	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................AATGGATTTATAGTTTGTGCGCAAGCA...........................	27	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................GGATTTATAGTTTGTGCGC................................	19	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................TTTTCGTCCGAGGT-TTTTGC.......................................................................	20	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................AATGGATTTATAGTTTGTGCGCAA..............................	24	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................ATAGTTTGTGCGCAAGCAACAAAACACC.................	28	1	1.00	1	0	1	0	0	0
...........................................................................................................................................CAAAA---TATTTTCGTCCGAGGT-T............................................................................	22	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................AATGGATTTATAGTTTGTGC..................................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................TTTATATTAACGTGAAAATGGA................................................	22	1	1.00	1	0	0	0	1	0
......................................................................................................................................................TTTCGTCCGAGGT-TTTTG........................................................................	18	1	1.00	1	1	0	0	0	0
.........................................................................................................................................ATCAAAA---TATTTTCGTCC...................................................................................	18	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................TTATATTAACGTGAAAATGGATTTAT...........................................	26	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................TTTATAGTTTGTGCGCAAGCA...........................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................ATTTATATTAACGTGAAAATGGATTTA............................................	27	1	1.00	1	0	1	0	0	0
...............................................................................................................................................A---TATTTTCGTCCGAGGT-TTTTGCA......................................................................	24	1	1.00	1	0	0	0	0	1
..................................................................................................................................................................................TAACGTGAAAATGGATTTATAGTTTG.....................................	26	1	1.00	1	0	1	0	0	0

droVir3

AA------------------------------------GTA--------GT-TCCGG---------AACACGGAACACC------------------------AGTTCAGTATCGTT-CCAAATGAAACGCAAAAAGGTCCAAA---TATTTTCGCTC-GTGTATTTTGCATTTATATGGAAATAAAAATGGCTTTATAGTTTGCGCGCAAACAAAA-C-ACAAGCACGAACAGTGCCC--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................AGGTCCAAA---TATTTTCGCTC-GT................................................................................	22	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TTTCGCTC-GTGTATTTTGC.......................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAAAGGTCCAAA---TATTTTCGCTC-GT................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................AAA-C-ACAAGCACGAACAGT......	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATATGGAAATAAAAATGGC................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................AAAAATGGCTTTATAGTTTGCGCGCA...............................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................ATAGTTTGCGCGCAAACAA..........................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTATAGTTTGCGCGCAAA.............................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................GTGTATTTTGCATTTATATGGAAAT.........................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AAACAAAA-C-ACAAGCACGAACAGT......	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................GCAAAAAGGTCCAAA---TATT..........................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTGCATTTATATGGAAATAAAAATGGC................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CAAAA-C-ACAAGCACGAACAG.......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATTTTCGCTC-GTGTATTTTGC.......................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGCATTTATATGGAAATAAAA.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTGCGCGCAAACAAAA-C-ACAAGCAC.............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AA---TATTTTCGCTC-GTGTA.............................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AAGGTCCAAA---TATTTTCGCTC-GTGTATT...........................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGGCTTTATAGTTTGCGCGCAA..............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCGCTC-GTGTATTTTGCATTTAT.................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................A---TATTTTCGCTC-GTGTATTTTGC.......................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTGCATTTATATGGAAATAAAAATGGCT...............................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GTGTATTTTGCATTTATATGGAA...........................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGCATTTATATGGAAATAAAAATGGCT...............................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TTTCGCTC-GTGTATTTTGCATTTATA................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................TTTTGCATTTATATGGAAATAAAAAT...................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CAAA---TATTTTCGCTC-GTGTATT...........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................AGTATCGTT-CCAAATGAAAC................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TTTCGCTC-GTGTATTTTGCAT.....................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGCGCGCAAACAAAA-C-ACAAGCAC.............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AAAAAGGTCCAAA---TATTTTCGCTC-..................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................T-CCAAATGAAACGCAAAAAGGTCC....................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAAA-C-ACAAGCACGAACAGT......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAGTTTGCGCGCAAACAAA.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGCGCGCAAACAAAA-C-ACAA.................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CGCAAAAAGGTCCAAA---TAT...........................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATTTTCGCTC-GTGTATTTTGCATT....................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GCAAAAAGGTCCAAA---TATTTTCGCT....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................T-CCAAATGAAACGCAAAAAGGTC.....................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AAATGGCTTTATAGTTTGCGCGCA...............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTTGCATTTATATGGAAAT.........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CCAAATGAAACGCAAAAAGGT......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATGGCTTTATAGTTTGCGCGCA...............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................GGAAATAAAAATGGCTTT.............................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCGCTC-GTGTATTTTGCAT.....................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................AGTATCGTT-CCAAATGAAA.................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AAATGGCTTTATAGTTTGCGCGC................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................CAAATGAAACGCAAAAAGGT......................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATGGAAATAAAAATGGCTTTAT...........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CAAAA-C-ACAAGCACGAACAGT......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AATAAAAATGGCTTTATAGTTTGCGCGC................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................ATTTTGCATTTATATGGAA...........................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAAAGGTCCAAA---TATTTTCGCT....................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACGCAAAAAGGTCCAAA---TATTTTCG......................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AATGAAACGCAAAAAGGTC.....................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................TCGCTC-GTGTATTTTGCATTTATA................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GTATTTTGCATTTATATGGAA...........................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AA-C-ACAAGCACGAACAGTGC....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAAAATGGCTTTATAGTTTGCGC..................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................ATGGCTTTATAGTTTGCGCGC................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................AACGCAAAAAGGTCCAAA---TAT...........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AACAAAA-C-ACAAGCACGAACAGT......	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGCGCGCAAACAAAA-C-AC...................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATTTATATGGAAATAAAAATGGCT...............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTTGCGCGCAAACAAAA-C-ACAAGCAC.............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATTTTCGCTC-GTGTATTTTGCAT.....................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATGAAACGCAAAAAGGTCCAAA---TAT...........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GTT-CCAAATGAAACGCAAAAAG........................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ACAAAA-C-ACAAGCACGAACAGT......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAAAGGTCCAAA---TATTTTCGCTC-..................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GCAAAAAGGTCCAAA---TATTTTCG......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AATGGCTTTATAGTTTGCGCGCAAACA...........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATATGGAAATAAAAATGGCTTTA............................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGCGCGCAAACAAAA-C-ACAAGCACGAAC.........	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GTATTTTGCATTTATATGGAAAT.........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................A---TATTTTCGCTC-GTGTATT...........................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATGAAACGCAAAAAGGTCC....................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATGGAAATAAAAATGGCTT..............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................AAAA-C-ACAAGCACGAACAG.......	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAAAAAGGTCCAAA---TATTTTCGCT....................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATGAAACGCAAAAAGGTCCAAA---T.............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAAAGGTCCAAA---TATTTTCGC.....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................CGCAAACAAAA-C-ACAAGCACGAACAGT......	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGCGCGCAAACAAAA-C-ACAAG................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CAAA---TATTTTCGCTC-GTGTATTTTG........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTGCATTTATATGGAAAT.........................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AGGTCCAAA---TATTTTCGCTC-GTGTATTTTGCATTTATA................................................................	38	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AAAATGGCTTTATAGTTTGCGCGCA...............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAAAGGTCCAAA---TATTTTCG......................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................CAAATGAAACGCAAAAAGGTC.....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CGCAAAAAGGTCCAAA---TATTTTCGCTC-GTGTATT...........................................................................	34	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................CACGGAACACC------------------------AGTTCAGTATC...............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAGTTTGCGCGCAAACAAAA-C-AC...................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TTTCGCTC-GTGTATTTTGCATT....................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CAAATGAAACGCAAAAAGGTCCAAA---T.............................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATTTATATGGAAATAAAAAT...................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CAAAA-C-ACAAGCACGAAC.........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TTATATGGAAATAAAAATGGCTTT.............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................AAGGTCCAAA---TATTTTCGCTC-GT................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CCAAATGAAACGCAAAAAG........................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

------------------------------------------------------------------------------------------------------CG-TTCAGTATCGTT-CCAAATGAAACGCAAAAAGGTCAACA---TATTTTCTGTC-GTGTATTTCGCATTTATATGGACATAAAAATGGCTTTCTAGTTTGCGCGCAAACAAAA-C-ACAAGCACGAATAGTGCCCAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................TGCGCGCAAACAAAA-C-ACAA.................	20	1	3.00	3	0	0	0	0	0	3
.............................................................................................................................................................................................................GCGCAAACAAAA-C-ACAAGCACGAATAGT......	28	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................GTC-GTGTATTTCGCATTTATATGGA............................................................	25	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................AATGGCTTTCTAGTTTGCGCGCA...............................	23	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................CAAATGAAACGCAAAAAGGTC.....................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................CAAACAAAA-C-ACAAGCACGAATAGT......	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................ATAAAAATGGCTTTCTAGTTT......................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................T-CCAAATGAAACGCAAAAAGGT......................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................GGACATAAAAATGGCTTTCTAGTTT......................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................GGTCAACA---TATTTTCTGTC-GT................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................TATTTTCTGTC-GTGTATTTCGCATTT...................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................CAAATGAAACGCAAAAAGGT......................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................GCGCGCAAACAAAA-C-ACA..................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................ATCGTT-CCAAATGAAACGCA.............................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................CAACA---TATTTTCTGTC-GTGTATTTCGC.......................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................C-GTGTATTTCGCATTTATATG..............................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................GTCAACA---TATTTTCTGTC-GT................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................ATTTCGCATTTATATGGACA..........................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................GTATTTCGCATTTATATGGAC...........................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................TTTCTGTC-GTGTATTTCGCATT....................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................ATTTTCTGTC-GTGTATTTCGCATTT...................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................CAAAAAGGTCAACA---TATTTTCT......................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................TATTTTCTGTC-GTGTATTT..........................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................AAA-C-ACAAGCACGAATAGT......	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................A---TATTTTCTGTC-GTGTATTTCGC.......................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................ACA---TATTTTCTGTC-GTGTATTTC.........................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................TGCGCGCAAACAAAA-C-ACAAG................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................CGCAAAAAGGTCAACA---TATTTTCTGTC-GT................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................TTCGCATTTATATGGACAT.........................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................GGACATAAAAATGGCTTTCTAGTTTGC....................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................AAAAGGTCAACA---TATTTTCTGTC-GTGT..............................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................ACAAAA-C-ACAAGCACGAA..........	18	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................AAAATGGCTTTCTAGTTTGCGCGCAA..............................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................TGAAACGCAAAAAGGTCAACA---TATTTTC.......................................................................................	28	1	1.00	1	0	0	0	0	0	1

droGri2

----------------------------------------------------------------------------------------------------------TCAGTACCGTT-CCAAATGAAACGCAAAAAGGTTCAAT---TATTCTTATCC-GTGTTTTTCGCATTTATATGGACATAATAATGGCTTTCTAGATTGCGCGCAAGCAAA-GCAACAAGCACGAC-AGTGCCC--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................TTCTAGATTGCGCGCAAGCAAA-GCA.....................	25	1	2.00	2	2	0
..............................................................................................................................................................................ATATGGACATAATAATGGCTTTCT...........................................	24	1	1.00	1	1	0
....................................................................................................................................................................TTTCGCATTTATATGGACATAATA.....................................................	24	1	1.00	1	1	0
.............................................................................................................................AAACGCAAAAAGGTTCAAT---TATTCTTA......................................................................................	27	1	1.00	1	1	0
............................................................................................................................................................................................ATGGCTTTCTAGATTGCGCGCAAGC............................	25	1	1.00	1	1	0
........................................................................................................................................................................................AATAATGGCTTTCTAGATTGCG...................................	22	1	1.00	1	1	0
..................................................................................................................................................................TTTTTCGCATTTATATGGACAT.........................................................	22	1	1.00	1	1	0
........................................................................................................................................................................GCATTTATATGGACATAATA.....................................................	20	1	1.00	1	1	0

dsi_2628

2l:20755200-20755298 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.1	-2.7	-2.6