ID:

dsi_26270

 Coordinate:

3l:8072857-8073006 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.7 -23.7 -23.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CAT)nSimple_repeatSimple_repeat+
mature
  1. 2l:8226745-8226762 +
  2. 2r:15887960-15887977 +
  3. 2r:19170925-19170942 +
  4. 2r:20548270-20548287 +
  5. 3l:2410090-2410107 +
  6. 3l:2748707-2748724 +
  7. dsi_26270  3l:8072923-8072940 +
  8. 3l:9628928-9628945 +
  9. 3l:10302440-10302457 +
  10. 3l:15465053-15465070 +
  11. 3l:15633226-15633243 +
  12. 3l:18846031-18846048 +
  13. 3r:5240546-5240563 +
  14. 3r:11559305-11559322 +
  15. 3r:23025910-23025927 +
  16. x:1040790-1040807 +
  17. x:9154225-9154242 +
  18. x:11978854-11978871 +
  19. x:13030387-13030404 +
  20. x:20022894-20022911 +
star

Sense Strand Reads

TGAATGAGACTCGAACGGCAGCTGCAACTGGCTGCCTGTCATGACTTTCACTGGGCGCAAATGAACTCTTAATGTGCCAACTCGGCCCAAGTCCATACCCATTACCACTATAATCTTCATCATCATCATCGTCATTATTGTCGTCAACCGAATTGCTAGTCGAAATTGATACAAACCCATTCGATTTTCGATTTTGGCAGGACGAGATGTCCATCCAGCTAATCGTGCAGGAAGTGCCCGAGCAGCCGAA
**************************************************...((((((.............))))))...((((...............((((......))))...............((.((....)).))....)))).(((((((((((((((((...........)))).)))))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...................................................TCGGCGCAAAAGAACTCTTCAT................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0
...........................................................................GACAACTCGGGCCAATTCCAT.......................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0
....................................................................................................................TCATCATCATCATCGTCA.................................................................................................................... 18 0 20 0.10 2 0 0 2 0
..........................................................AAAAGAACTCTTAAT................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1
....................................................................................................................TCATCATCATCATCG....................................................................................................................... 15 0 20 0.05 1 0 0 1 0
.......................................................................................................................................................................................ATTGTCGATTTTGGC.................................................... 15 1 20 0.05 1 1 0 0 0
....................................................................................................................TCATCATCATCATCGTC..................................................................................................................... 17 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

ACTTACTCTGAGCTTGCCGTCGACGTTGACCGACGGACAGTACTGAAAGTGACCCGCGTTTACTTGAGAATTACACGGTTGAGCCGGGTTCAGGTATGGGTAATGGTGATATTAGAAGTAGTAGTAGTAGCAGTAATAACAGCAGTTGGCTTAACGATCAGCTTTAACTATGTTTGGGTAAGCTAAAAGCTAAAACCGTCCTGCTCTACAGGTAGGTCGATTAGCACGTCCTTCACGGGCTCGTCGGCTT
**************************************************...((((((.............))))))...((((...............((((......))))...............((.((....)).))....)))).(((((((((((((((((...........)))).)))))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
...................................................................................................................AAGTAGTAGTAGTAGCAGT.................................................................................................................... 19 0 2 0.50 1 1 0 0 0
...................................................................................................................AAGTAGTAGTAGTAGCAG..................................................................................................................... 18 0 4 0.25 1 0 1 0 0
..........................................................................................................................................................................................................GCTCTAGAGCTAGGTCGCTT............................ 20 3 4 0.25 1 1 0 0 0
...........................................................................................................GCACTTAGAAGTAGTAGTAGTAG........................................................................................................................ 23 3 8 0.13 1 1 0 0 0
.......................................................................................................................AGGAGTAGTAGCAGGAATCAC.............................................................................................................. 21 3 10 0.10 1 0 0 0 1
....ACTCTGATCTTGCCAT...................................................................................................................................................................................................................................... 16 2 11 0.09 1 0 0 1 0
................................................................................................................CAGAAGTATTAGTAGTAGCAG..................................................................................................................... 21 2 19 0.05 1 0 0 0 1
.......................................................................................................................AGTAGTAGTAGCAGTA................................................................................................................... 16 0 20 0.05 1 0 0 1 0
...................................................................................................................................AGTAATAACTGCAGTTA...................................................................................................... 17 2 20 0.05 1 0 0 1 0
..................................................................................................................GAAGTAGTAGTAGTA......................................................................................................................... 15 0 20 0.05 1 1 0 0 0

Generated: 04/24/2015 at 10:43 AM