ID:

dsi_26267

Coordinate:

3r:4458289-4458438 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4457526_4458288_-]; exon [3r_4456958_4458288_-]; intron [3r_4458289_4458712_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCAGACAATTCCCACCACTGTTGTCATTTGATAAGATTGCTGCTATAAAAGTCCCCAGATTTAGTCGATTTTTTTGCTACCGAGGATGAGCACATTACCCCGTAAACAGAAGCGCTTTCCGCGTATCCCCAGTTTCCTAATCAGGCAGAATGGCACACATTTAAACAAAGTTATCATCTGACTAAATTGTCATCTCTTAGGTATGTGCCCCCGTTAACATCGGCCAGCCCAAAGCTTCCGGATACGCCGG ************************************************.......((((((((((((..(((((....((.((.(((.....))).))))......((.((((.....)))).)).(((.((((((....))).))).)))............)))))..)))....)))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body
..............................................................................................................................................................................................CATCTCTTAGGTATGTGCCC........................................	20	0	1	2.00	2	2	0	0	0
..................TGCCGTCATTTGATAAAATTGC..................................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0
........................................TACTCTAAAAGTCCCCAGGT..............................................................................................................................................................................................	20	3	3	0.33	1	0	1	0	0
...................GTAGTCATCTGATAAGAT.....................................................................................................................................................................................................................	18	2	3	0.33	1	0	0	0	1
..........................................CTCTAAAAGTCACCAG................................................................................................................................................................................................	16	2	20	0.10	2	0	2	0	0
..........................................................................................................................................................................................................ATATCCCGCCGTTAACATC.............................	19	3	12	0.08	1	0	0	1	0
..........................................CTCTAAAAGTCACCAGGTT.............................................................................................................................................................................................	19	3	12	0.08	1	0	1	0	0
.........................................GCTCTAAAAGTCACCAGGT..............................................................................................................................................................................................	19	3	13	0.08	1	0	1	0	0

Anti-sense strand reads

GGTCTGTTAAGGGTGGTGACAACAGTAAACTATTCTAACGACGATATTTTCAGGGGTCTAAATCAGCTAAAAAAACGATGGCTCCTACTCGTGTAATGGGGCATTTGTCTTCGCGAAAGGCGCATAGGGGTCAAAGGATTAGTCCGTCTTACCGTGTGTAAATTTGTTTCAATAGTAGACTGATTTAACAGTAGAGAATCCATACACGGGGGCAATTGTAGCCGGTCGGGTTTCGAAGGCCTATGCGGCC ************************************************.......((((((((((((..(((((....((.((.(((.....))).))))......((.((((.....)))).)).(((.((((((....))).))).)))............)))))..)))....)))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
...............................................................................................................................................................AAATTTGTTTCAATAGTAGACTGAT..................................................................	25	0	1	1.00	1	1	0	0	0	0
.....................................................................AAAAAATGATAGCTCCT....................................................................................................................................................................	17	2	17	0.47	8	1	0	2	2	3
....................................................................................................................................................................................................................................GGTTTAGAAGGCCTGTACGG..	20	3	4	0.25	1	0	0	1	0	0
...............................................................................................................................................................................................................GGGGGCAATGGTAGCCT..........................	17	2	5	0.20	1	0	1	0	0	0
....................................................................AAAAAAACGATGGCCCCA....................................................................................................................................................................	18	2	6	0.17	1	0	1	0	0	0
.............................................................................ATGACTGCTACTCGCGTAA..........................................................................................................................................................	19	3	7	0.14	1	0	1	0	0	0
....................................................................AAAAAAATGATAGCTCCT....................................................................................................................................................................	18	2	9	0.11	1	0	0	0	1	0
.....................................................................AAAAAACGCTGGCACCT....................................................................................................................................................................	17	2	12	0.08	1	0	0	0	0	1
.....................................................GGGTCTAAATCGACTATAAA.................................................................................................................................................................................	20	3	15	0.07	1	0	0	0	1	0
.......................................................................................................................................................................................................................TTATAGCCGCTCGGGATT.................	18	3	20	0.05	1	1	0	0	0	0
......................................................................AAAAATGATAGCTCCT....................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................CCGGTCGCGTTTCGATG............	17	2	20	0.05	1	0	0	1	0	0

Generated: 04/24/2015 at 08:21 AM