ID:

dsi_26241

 Coordinate:

2r:4362464-4362613 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.0 -11.9 -11.6 -11.5

Flybase annnotation

exon [2r_4362165_4362463_+]; CDS [2r_4362165_4362463_+]; intron [2r_4362464_4363240_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGATTCCATCGACAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCATCTGCCCACTTAGAAGACTTAGGCTAGAATACATGTGTATATTTTGAATTAGATCGGTTTTAAGCGGCTATACTGACTGAGCATCTCTCCTACACCTTGTGCTTTCAATCGCTTTCGTCGGCCTGTGCAGGTTTTTTGAATGTTTTCGATGGCCGTGTACGGTTGGCTTTTTCCTTAAATTATATTTGTTTGTTTGTAAGCGA
***************************************************************************************..........((..........(((((......(((..((((((..............))))))))).))))).........))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................TTCGATGGCCGTGTACGGTTGGCTTT................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................................................CTATACTGACTGAGCC........................................................................................................................ 16 1 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................TTCAATCGCTTTCGTCGGCCT............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTTCGTCGGCCTGTGCAGG........................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................ATTTTGAATTAGATCGGTTTTAAGC.......................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................TTTCGTCGGCCTGTGCAG......................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................TTGAATTAGATCGGTTTTAAGCGGC....................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................ATTAGATCGGTTTTAAGCGGC....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................CTACACTGACTGAGC......................................................................................................................... 15 1 3 0.33 1 0 0 1 0 0 0 0 0
......................................................................................................................................................CTCAATCGGTTTCGTCTGCCT............................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0
.........................................................................................TTTGAATTAGATCGGT................................................................................................................................................. 16 0 4 0.25 1 0 0 0 0 0 1 0 0
..........................................................................................TTGAATTAGATCGGT................................................................................................................................................. 15 0 4 0.25 1 0 0 0 0 0 1 0 0
................................................................................................................CGCTACACTGACTGAGC......................................................................................................................... 17 2 5 0.20 1 0 0 1 0 0 0 0 0
.................................................................................................................GCTACACTGACAGAGC......................................................................................................................... 16 2 20 0.15 3 0 0 2 0 0 0 1 0
................................................................................................................CGCTACACTGACTGAGCC........................................................................................................................ 18 3 20 0.10 2 0 0 1 0 0 0 0 1
..................................................................................................................CTACACTGACTGAGCC........................................................................................................................ 16 2 20 0.10 2 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................ATGTTCTCGATCGCCGT............................................... 17 2 14 0.07 1 0 0 1 0 0 0 0 0
..............GCAGCAACAACAGCAGCAGCAGAAGCAGC............................................................................................................................................................................................................... 29 1 15 0.07 1 0 0 0 0 0 0 1 0
...............................................................................................................GCGCTATACTGACGGAGC......................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................GCTACACTGACGGAGC......................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................GCGCTACACTGACTGAGC......................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0
..........................GCAGCAGCAGCAGCAGCAG............................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 1 0 0 0 0
...............................................................................................................CCGCTACACTGACTGAGCC........................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................CGCTACACTGACGGAGCA........................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCTAAGGTAGCTGTCGTCGTTGTTGTCGTCGTCGTCGTCGTCGTCGTAGACGGGTGAATCTTCTGAATCCGATCTTATGTACACATATAAAACTTAATCTAGCCAAAATTCGCCGATATGACTGACTCGTAGAGAGGATGTGGAACACGAAAGTTAGCGAAAGCAGCCGGACACGTCCAAAAAACTTACAAAAGCTACCGGCACATGCCAACCGAAAAAGGAATTTAATATAAACAAACAAACATTCGCT
*******************************************************************************..........((..........(((((......(((..((((((..............))))))))).))))).........))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
...................................................................TCCGGTCCTATGTACAAATAT.................................................................................................................................................................. 21 3 6 1.17 7 6 0 0 1 0 0
...................................................................TCCGGTCCTATGTACAAATATA................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
.CTAAGGTAGATGTCGTAG....................................................................................................................................................................................................................................... 18 2 4 1.00 4 0 0 4 0 0 0
..............................................................................................................................TCGTAGAGAGGATGTGGAACA....................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................CCGGTCCTATGTACAAATATA................................................................................................................................................................. 21 3 5 0.60 3 3 0 0 0 0 0
..............................................TTGACGGGTGAATCTT............................................................................................................................................................................................ 16 1 2 0.50 1 0 0 0 1 0 0
................TCGTTGTTGTCGTCGT.......................................................................................................................................................................................................................... 16 0 20 0.20 4 0 0 0 0 4 0
...........................................TCGTAGTCGGTAGAATCTTC........................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0
................................................................................................................................................................AAGCAGCCTGACATCTCCA....................................................................... 19 3 7 0.14 1 0 0 0 0 0 1
TCTAAGGTAGATGTCGTAG....................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 2 0 0 0
..............CGTCGTTGTTGTCGTCGTC......................................................................................................................................................................................................................... 19 0 20 0.10 2 0 0 0 0 2 0
.....................................................................CGGTCCTATGTACAAATATA................................................................................................................................................................. 20 3 20 0.10 2 2 0 0 0 0 0
.................................................................................................................CGAGATGGCTGACTCATAG...................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0
.CTAAGGTAGATGTCGTA........................................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 1 0 0 0
....................................................................................................................................................................................................................CGAAAAAGGAATCTAGTATT.................. 20 3 17 0.06 1 0 0 0 0 1 0
.................................................................................................................CGATATGGCTGACTC.......................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4362414-4362663 + dsi_26241 CGATTCCAT---------------------------------CG---ACAGCAGCAAC------AACAG---CAGCAGCAG---CAGCA------GCAGC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACTTAGAA-----GACTT------------AGGCTAGAAT-----ACATGTGTATATTTTGAATTAGATCGG------------------------TTTTAAGC----GGCTA----TACTGACTGAGCATCTC------------TCCTACACC--TTG-------TGCTTTCAATCGCTTTCGTCGGCCTGTGCAGGTTTTTTG----------------AATGTTTTCGATGGCCGTGTACGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
droSec2 scaffold_1:1177921-1178158 + CGATTCCAT---------------------------------CG---ACAGCAGCAAC------AG------------------CAGCA------GCAGC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACTTAGAA-----GACTT------------AGGCTAGAAT-----ACATGTGTATATTTTGAATTAGATCGG------------------------TTTTAAGC----GGCTA----TACTGACTGAGCATCTC------------TCCTACACC--TTG-------TGCTTTCAATCGCTTTTGTCGGCCTGTGCAGGTTTTTTG----------------AATGTTTTCGATGGCCGTGTACGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
dm3 chr2R:3520855-3521125 + CGATTCCAT---------------------------------CG---ACAGCGACAGC------AGCAACAGCACCAACAG---CAGCA------GCAGC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACATAGAA-----GACTT------------AGGCTAGAAT-----ATAAGTGTATATTTTTAATTAGATCGG------------------------TTTTAAGC----GGCTA----TACTGACTGAGCATCTC------------TCCTACACACCTTG-------TGTTTTCAATCGCTTTCGACAGCCTGTGCAAGTTATTTGAATCTTTCGCAAGCGTAATGTTTTCGATGACCGTATACGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
droEre2 scaffold_4929:19082957-19083233 - CGATTCCAC---AGACAGCGACAGCAGCAG------------CA---GCAGCAGCAGC------AGCAA---CAGCAGCAA---CAGCA------GCACC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACTTAG--------ACAT------------AGGCTAGAAT-----ATATG--TATATTTTTAATTAGATTGG------------------------TTTAAAGC----GGGTA----TTCTGACTGAGCTT--C------------TCCTACACC--TTT-------TGTTTTCAATTGTTTTCGACGGCCTGTGCAGGGTTTTTGAATCTTTCGCAAGCGTAATGTTTTCGATCGCTGTTTAAGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
droYak3 2L:16193061-16193314 + CGATTCCAT---------------------------------CG---ACAGCGACAGC------AGC------AACAGCAG---CAGCA------GCATC---------------------------ATTTGCC------------------------------------------------------------------------------------------------------------------CACTTCG--------ACTT------------AGGCTAGAAT-----ATATG--TATA-TTTAAATTAGATTGG------------------------TT-TAAGC----GGGTA----TATTGACTGATCTT--C------------TCCTACACC--TTT-------TGTTTTCCACTATTTCCTACGGTCTATGCAAGTTATTTGAATCTTTCGCAAGCGTAATGTTTTTGAAGGCTGTTAACGGTTGAC-TTTTTCC--TT-------AAGTAATATTTGTTTGTTTG-----TAAGCGA
droEug1 scf7180000409672:5536835-5537077 + AGGTTCCAT---------------------------------CAGCGACAGCAGCAAC------AGCAA---CAGCAGCAG---CAGCA------GCAAC---------------------------ACCTGCC------------------------------------------------------------------------------------------------------------------CACTTAGG----GGAATTT------------AAGTTAGAGT-----TTAG--------TTTTAATTAGTTCGG------------------------CTTTAAGC----GGGTACT--CTCTGACTGAGCTTTCT------------TTCTACGCT--TTTTG-----TA-TTTGTATTGTTTTCGG----------------------TGTTTCGCCAGTGCAATGTTTTCGTTAGCTGTTTATGGTTGAC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
droBia1 scf7180000302292:2612710-2612957 - AGGTTCCAC---------------------------------CA---GCGGCAGCAGC------AG------------CAT---CAGCA------GAACC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACCTAGC----GTGACTT------------AAGCTAAAAT-----TTAAAAGTAT---CTTAAGTAGATCGG------------------------TTATAAGC----GGGTA----TACTGACTGAGCTTC-CTACAGCTGCTACTACTACACC--CTTTGTATTCGAAT-------------------------------TTCAAATGCTTCGCCAGTGTAATGTTTTCACTAGCTGTTTATGGTTGAAAATTTTCC--TT-------AAATTATATTTGTTTGTTTGTTTCGTAAGCGA
droTak1 scf7180000416016:127038-127252 + AGGTTCCAC---------------------------------CA---GCGACAGCAGC------AACGT---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGG----GAAACCTAAGTTT------A---CAAATT-----TAAAGAGTATA--TTTAATTAGTTCGG------------------------TTTTAAGC----GGGTA----TGCTGACTGAGCTTT-CTACGGC------CTCTACACC--CTT-------TGTATTCAATTG-------------------------------TTTCGCCAGTGTAATGTTTTCGCTAGCTGTTTATGGTTGAAATTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
droEle1 scf7180000491347:375423-375659 + CGGTTCCAC---------------------------------CA---GCGACAGCAGC------AAC------ACCAGCAG---CAGCA------GCAAC---------------------------ACCTGGC------------------------------------------------------------------------------------------------------------------CACTTAAT----GGGACTT------------GGGTTTAAAT-----TTAAG---------TTAGTTGTAGCGG------------------------CTATAAGC----GGGTA----TACTGACTGAGCTTT-C------------TTTTTCAC---TTT-------TGTTTTTAGTTGATTTGAATGGCCCTTGTAAAATATTGAAATCTTTCGCCAGTGTAATGTTTTCGCTAGC-----------------TTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAACGA
droRho1 scf7180000780108:114821-115093 + CGGTTCCAC---------------------------------CAGCGACAGCAGCAACACCAGCAACAT---CAACAGCAG---CAGCA------GCAAC---------------------------ACCTGCC------------------------------------------------------------------------------------------------------------------CACCTAGGACTTGGGACTT------------GGTTTAAAAT-----TTAAG--------TTTAATTTTAGCGG------------------------TTATAGGC----GGGTA----TACTGACTGAACTTT-C------------TTCTTCACG--TTT-------CGTAATTATTTGATTTTAATGGCCTACGCAAATTATTGAAATCTTTCGCCAGTGTAATGTTTTCGCTAGCTGTTTATGGTTGACATTTTTCC-TTT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
droFic1 scf7180000453948:279567-279850 + CGCTTCCACCAGAGACAACAGCAGCAGCAG------------CA---GCAGCAGCAGC------AACAA------------------------CAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAAATGAC------------------------------------------------------------------------------------------------------------------CACCTAGC----GGGATTT------------AAGCCGGATT-----TTAAG--------ATTAGTGTTAGCGG------------------------TTATGGGC----GGGTTC---AACCGACTGAGCTTT-C------------TTCTCCACC--CTC-------TGTATTCAATTGTTTT-AATGGC-TGCG----------AAGCCCTTCGCCAGTGAAGTGTTTTCGCAAGCCGTTTATGGTTGACGTTTTTCC--CT-------AAATTATATTTGTTTGTTTG-----TAAGCGA
droKik1 scf7180000302476:3347568-3347860 + CGCTTCCAC---------------------------------CA---GCGCCAGCAGC------AGCGC---CTCCAGCAGCAGCAGCA------GCAAC---------------------------AGCTGGT------------------------------------------------------------------------------------------------------------------GACTTAGTA-----TACTG------AAATCTAGGCTTAAATTAGGCTTAAG--------ACTAGTAGTAGGGC------------------------CTCTAAGTACATAGGTACACATACTGACTGAGTCTTTC-CCTAC------ACCTATACC--TAT-------TATTTTCCATGGCGTTTAATGGCGCATACCAATTATTGAAATGTTTCAAGTGTGTAATGTTTTTGCTCTCTGTTTATGGTTGAC-GTTTTTTT-TTCTCATTAAATTTATTTGTGTTTGTTTG-----TAAGCGA
droAna3 scaffold_13266:10034438-10034719 + CGATTTAATCAGC------GACAGCAACAGTACATGCAGCAGCA---ACATCAGC---------AACAT---CAGCAGCAG---CAGCA------GCAAC---------------------------AGTTGCACACATAATGGACATCGATTTTAATTAGAATTAGTTAGAGTCTTAGTTAGGTCGGGTATACTGTGGACTGAATCTATAT--ATATTTTTCCTATACTGTATTGATTTTAAAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAG-------TGTTTTCG------TTCGCCAGCC-------------------TACCGAATGTGTAATATTTTCGCTTTCCGTTCATCATTAAA-------T--TA-------AAATTGTATTTGTTTGTTTA-----TCAGT--
droBip1 scf7180000396759:1750103-1750359 + CGATTTAATCAGC------GACAGCAACAGTACAT------------------GCAAC------AGCAA---CAGCAGCAG---CAGCA------ACAAC---------------------------AGTTGCACACATAATGGACATTGATTTTAATTAGATTTAATTAGAAACTTGGTTAGGTCGGGTATACTGTGGACTGAATCTATATATATATTTTTCCTATAATGTATTGCTTTTAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGTTTGCCAG----------------CTACCGAATGTGTAATATTTTCGCTTTCCGTTCA-------------TCA--TT-------AAATTGTATTTGTTTGTTTG-----TAAGC--
dp5 XL_group1a:4939454-4939504 + T----CCAG---------------------------------CA---ACAGCAGCAAC------AGCAG---CAGCAGCAG---CAGCA------GCAGC---------------------------AGCTCCC------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_17:340015-340063 - CAACAGCAG---------------------------------CA---ACAGCAGCAGC------AGCAA---CAGCAGCAG---CAGCA------GCAGC---------------------------ATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004382:180327-180391 - AGATTTCAT---------------------------------CA---GAGGCAGCAGC------AGCAG---CAACAACAACAACAGCAATAACAAATTC-----------------------------------------------------------------------------------------------------------------------------------------------------A-TTAAGA-----GAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:1457724-1457827 + CAGCAACAG---------------------------------CA---GCAGCAACAGC------AG------CAACAGCAG---CAACA------GCATC---------------------------ATGTGCC------------------------------------------------------------------------------------------------------------------TATATAGAA------------------------------------------------------ATTAGATCAATATCTTTATTTATTTATAAATTGTTT-TACGT----GGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:3657095-3657168 - CGACGCCAG---------------------------------CA---GCAGCAGCAGC------AGCAG---CAGCAGCAGCGGCAGCG------GCAGC------AGC------------------ATCT--------------------------------------------------------------------------------------------------------------------------TTGA-----TGCTG------------AGGCTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:4451190-4451251 + CAACAGCAG---------------------------------CA---ACAGCAGCAAC------AGCAG---CAGCAGCAG---CAGCA------GCAGC---------------------------ATCAGCT------------------------------------------------------------------------------------------------------------------CATTAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGATTCCAT---------------------------------CG---ACAGCAGCAAC------AACAG---CAGCAGCAG---CAGCA------GCAGC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACTTAGAA-----GACTT------------AGGCTAGAAT-----ACATGTGTATATTTTGAATTAGATCGG------------------------TTTTAAGC----GGCTA----TACTGACTGAGCATCTC------------TCCTACACC--TTG-------TGCTTTCAATCGCTTTCGTCGGCCTGTGCAGGTTTTTTG----------------AATGTTTTCGATGGCCGTGTACGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGGCCGTGTACGGTTGGC-TTT...............................................2611.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CTA----TACTGACTGAGCC............................................................................................................................................................................1611.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATCGCTTTCGTCGGCCT..............................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCGGCCTGTGCAGG.......................................................................................................1911.00110000000000000000
................................................................................................................................................................................................................................................................................................................ATTTTGAATTAGATCGG------------------------TTTTAAGC----..................................................................................................................................................................................................2511.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCGGCCTGTGCAG........................................................................................................1811.00100100000000000000
...................................................................................................................................................................................................................................................................................................................TTGAATTAGATCGG------------------------TTTTAAGC----GGC...............................................................................................................................................................................................2511.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................ATTAGATCGG------------------------TTTTAAGC----GGC...............................................................................................................................................................................................2111.00110000000000000000
..................................................................................................................................................................................................................................................................................................................TTTGAATTAGATCGG------------------------T.............................................................................................................................................................................................................1640.25100000000001000000
...................................................................................................................................................................................................................................................................................................................TTGAATTAGATCGG------------------------T.............................................................................................................................................................................................................1540.25100000000001000000
....................................................................G---CAGCAGCAG---CAGCA------GCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000000000
droSec2
CGATTCCAT---------------------------------CG---ACAGCAGCAAC------AG------------------CAGCA------GCAGC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACTTAGAA-----GACTT------------AGGCTAGAAT-----ACATGTGTATATTTTGAATTAGATCGG------------------------TTTTAAGC----GGCTA----TACTGACTGAGCATCTC------------TCCTACACC--TTG-------TGCTTTCAATCGCTTTTGTCGGCCTGTGCAGGTTTTTTG----------------AATGTTTTCGATGGCCGTGTACGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCAATCGCTTTTGTCGG.................................................................................................................2111.0010001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGATGGCCGTGTACGG........................................................2111.0010001
....................................................................................................................................................................................................................................................................................................................................................................................CTGAGCATCTC------------TCCTACACC--T................................................................................................................................................2111.0010001
..............................................................................................................................................................................................................................................................................................................................................................................TACTGACTGAGCATCTC------------TCC.........................................................................................................................................................2011.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACGGTTGGC-TTTTTCC--T........................................2011.0010001
.............................................................................................................................................................................................................................................................AGAA-----GACTT------------AGGCTAGAAT-----ACATGTGT.........................................................................................................................................................................................................................................................2711.0010010
......................................................................................................................................................................................................................................................................GACTT------------AGGCTAGAAT-----ACATGTGT.........................................................................................................................................................................................................................................................2311.0010001
...........................................G---ACAGCAGCAAC------AG------------------CAGCA------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410010
....................................................AGCAAC------AG------------------CAGCA------GCAGC---------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020020
...............................................ACAGCAGCAAC------AG------------------CAGCA------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020020
...............................................ACAGCAGCAAC------AG------------------CAGCA------GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
...............................................ACAGCAGCAAC------AG------------------CAGCA------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510001
dm3
CGATTCCAT---------------------------------CG---ACAGCGACAGC------AGCAACAGCACCAACAG---CAGCA------GCAGC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACATAGAA-----GACTT------------AGGCTAGAAT-----ATAAGTGTATATTTTTAATTAGATCGG------------------------TTTTAAGC----GGCTA----TACTGACTGAGCATCTC------------TCCTACACACCTTG-------TGTTTTCAATCGCTTTCGACAGCCTGTGCAAGTTATTTGAATCTTTCGCAAGCGTAATGTTTTCGATGACCGTATACGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGGTTGGC-TTTTTCC--TT-------A...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TAAGC----GGCTA----TACTGACTGAA..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTCCAT---------------------------------CG---ACAGCGACAGC------AGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAGC----GGCTA----TACTGACTGAGC.............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CTGACTGAGCATCTC------------TCCTACATC...................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACAGCCTGTGCAAGTTAT...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTTGGC-TTTTTCC--TT-------AAATTATA........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGACCGTATACGGTTGG....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCATCTC------------TCCTACACACCTT...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGGTTGGC-TTTTTT............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CTA----TACTGACTGAGCATCTC------------............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AATTAGATCGG------------------------TTTTAAGC----G.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTTAATTAGATCGG------------------------TTTTAAG.......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGACCGTATACGGTTGG....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGC-TTTTTCC--TT-------AAATTAT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGCAAGCGTAATGTTTTCGA.....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ATTTTTAATTAGATCGG------------------------TTTT..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGTGCAAGTTATTTGA...............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TTAAGC----GGCTA----TACTGACTGA...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CATAGAA-----GACTT------------AGGCTT..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCTTTCGACAGCCTGTG...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAATCTTTCGCAAGCGTATC.............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATACGGTTGGC-TTTTTCC--.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC--TT-------AAATTATATTTGTTT.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................AGC----GGCTA----TACTGACTGAGCA............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AGCACCAACAG---CAGCA------GCAGC---------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................2170.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
................................................................AGCAACAGCACCAACAG---CAGCA------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................CAACAGCACCAACAG---CAGCA------GCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAGCACCAACAG---CAGCA------GCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.4440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000020000000000000000000000010000
.......................................................................GCACCAACAG---CAGCA------GCAGC---------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................20100.4040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000001000000000000
droEre2
CGATTCCAC---AGACAGCGACAGCAGCAG------------CA---GCAGCAGCAGC------AGCAA---CAGCAGCAA---CAGCA------GCACC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACTTAG--------ACAT------------AGGCTAGAAT-----ATATG--TATATTTTTAATTAGATTGG------------------------TTTAAAGC----GGGTA----TTCTGACTGAGCTT--C------------TCCTACACC--TTT-------TGTTTTCAATTGTTTTCGACGGCCTGTGCAGGGTTTTTGAATCTTTCGCAAGCGTAATGTTTTCGATCGCTGTTTAAGGTTGGC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATATTTGTTTGTTTG-----TAA....2211.0010000010
........................................................................................................................................................................................................................................................................................................................TTAGATTGG------------------------TTTAAAGC----GGGT..............................................................................................................................................................................................2111.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGACGGCCTGTGCAGGGT.....................................................................................................2311.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGATCGCTGTTTAAGG........................................................2111.0010010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTCGACGGCCTGTG...........................................................................................................1911.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTTTCGACGGCCTGTGCAGG.......................................................................................................2511.0010000010
...............CAGCGACAGCAGCAG------------CA---GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000010
........................................................GC------AGCAA---CAGCAGCAA---CAGCA------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000000
...................................................CAGCAGC------AGCAA---CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000
droYak3
CGATTCCAT---------------------------------CG---ACAGCGACAGC------AGC------AACAGCAG---CAGCA------GCATC---------------------------ATTTGCC------------------------------------------------------------------------------------------------------------------CACTTCG--------ACTT------------AGGCTAGAAT-----ATATG--TATA-TTTAAATTAGATTGG------------------------TT-TAAGC----GGGTA----TATTGACTGATCTT--C------------TCCTACACC--TTT-------TGTTTTCCACTATTTCCTACGGTCTATGCAAGTTATTTGAATCTTTCGCAAGCGTAATGTTTTTGAAGGCTGTTAACGGTTGAC-TTTTTCC--TT-------AAGTAATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATCTTTCGCAAGCGTAAT.............................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................TAAATTAGATTGG------------------------TT-TAAGC----GGGC..............................................................................................................................................................................................2411.00110000000000
........................................................GC------AGC------AACAGCAG---CAGCA------GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.25505000000000
........................................................GC------AGC------AACAGCAG---CAGCA------GCATC---------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................23160.06101000000000
droEug1
AGGTTCCAT---------------------------------CAGCGACAGCAGCAAC------AGCAA---CAGCAGCAG---CAGCA------GCAAC---------------------------ACCTGCC------------------------------------------------------------------------------------------------------------------CACTTAGG----GGAATTT------------AAGTTAGAGT-----TTAG--------TTTTAATTAGTTCGG------------------------CTTTAAGC----GGGTACT--CTCTGACTGAGCTTTCT------------TTCTACGCT--TTTTG-----TA-TTTGTATTGTTTTCGG----------------------TGTTTCGCCAGTGCAATGTTTTCGTTAGCTGTTTATGGTTGAC-TTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotal
No Reads
droBia1
AGGTTCCAC---------------------------------CA---GCGGCAGCAGC------AG------------CAT---CAGCA------GAACC---------------------------ATCTGCC------------------------------------------------------------------------------------------------------------------CACCTAGC----GTGACTT------------AAGCTAAAAT-----TTAAAAGTAT---CTTAAGTAGATCGG------------------------TTATAAGC----GGGTA----TACTGACTGAGCTTC-CTACAGCTGCTACTACTACACC--CTTTGTATTCGAAT-------------------------------TTCAAATGCTTCGCCAGTGTAATGTTTTCACTAGCTGTTTATGGTTGAAAATTTTCC--TT-------AAATTATATTTGTTTGTTTGTTTCGTAAGCGASizeHit CountTotal NormTotal
No Reads
droTak1
AGGTTCCAC---------------------------------CA---GCGACAGCAGC------AACGT---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGG----GAAACCTAAGTTT------A---CAAATT-----TAAAGAGTATA--TTTAATTAGTTCGG------------------------TTTTAAGC----GGGTA----TGCTGACTGAGCTTT-CTACGGC------CTCTACACC--CTT-------TGTATTCAATTG-------------------------------TTTCGCCAGTGTAATGTTTTCGCTAGCTGTTTATGGTTGAAATTTTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotal
No Reads
droEle1
CGGTTCCAC---------------------------------CA---GCGACAGCAGC------AAC------ACCAGCAG---CAGCA------GCAAC---------------------------ACCTGGC------------------------------------------------------------------------------------------------------------------CACTTAAT----GGGACTT------------GGGTTTAAAT-----TTAAG---------TTAGTTGTAGCGG------------------------CTATAAGC----GGGTA----TACTGACTGAGCTTT-C------------TTTTTCAC---TTT-------TGTTTTTAGTTGATTTGAATGGCCCTTGTAAAATATTGAAATCTTTCGCCAGTGTAATGTTTTCGCTAGC-----------------TTTCC--TT-------AAATTATATTTGTTTGTTTG-----TAAACGASizeHit CountTotal NormTotal
No Reads
droRho1
CGGTTCCAC---------------------------------CAGCGACAGCAGCAACACCAGCAACAT---CAACAGCAG---CAGCA------GCAAC---------------------------ACCTGCC------------------------------------------------------------------------------------------------------------------CACCTAGGACTTGGGACTT------------GGTTTAAAAT-----TTAAG--------TTTAATTTTAGCGG------------------------TTATAGGC----GGGTA----TACTGACTGAACTTT-C------------TTCTTCACG--TTT-------CGTAATTATTTGATTTTAATGGCCTACGCAAATTATTGAAATCTTTCGCCAGTGTAATGTTTTCGCTAGCTGTTTATGGTTGACATTTTTCC-TTT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotal
No Reads
droFic1
CGCTTCCACCAGAGACAACAGCAGCAGCAG------------CA---GCAGCAGCAGC------AACAA------------------------CAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAAATGAC------------------------------------------------------------------------------------------------------------------CACCTAGC----GGGATTT------------AAGCCGGATT-----TTAAG--------ATTAGTGTTAGCGG------------------------TTATGGGC----GGGTTC---AACCGACTGAGCTTT-C------------TTCTCCACC--CTC-------TGTATTCAATTGTTTT-AATGGC-TGCG----------AAGCCCTTCGCCAGTGAAGTGTTTTCGCAAGCCGTTTATGGTTGACGTTTTTCC--CT-------AAATTATATTTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotal
No Reads
droKik1
CGCTTCCAC---------------------------------CA---GCGCCAGCAGC------AGCGC---CTCCAGCAGCAGCAGCA------GCAAC---------------------------AGCTGGT------------------------------------------------------------------------------------------------------------------GACTTAGTA-----TACTG------AAATCTAGGCTTAAATTAGGCTTAAG--------ACTAGTAGTAGGGC------------------------CTCTAAGTACATAGGTACACATACTGACTGAGTCTTTC-CCTAC------ACCTATACC--TAT-------TATTTTCCATGGCGTTTAATGGCGCATACCAATTATTGAAATGTTTCAAGTGTGTAATGTTTTTGCTCTCTGTTTATGGTTGAC-GTTTTTTT-TTCTCATTAAATTTATTTGTGTTTGTTTG-----TAAGCGASizeHit CountTotal NormTotal
No Reads
droAna3
CGATTTAATCAGC------GACAGCAACAGTACATGCAGCAGCA---ACATCAGC---------AACAT---CAGCAGCAG---CAGCA------GCAAC---------------------------AGTTGCACACATAATGGACATCGATTTTAATTAGAATTAGTTAGAGTCTTAGTTAGGTCGGGTATACTGTGGACTGAATCTATAT--ATATTTTTCCTATACTGTATTGATTTTAAAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAG-------TGTTTTCG------TTCGCCAGCC-------------------TACCGAATGTGTAATATTTTCGCTTTCCGTTCATCATTAAA-------T--TA-------AAATTGTATTTGTTTGTTTA-----TCAGT--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................ATTAGTTAGAGTCTTAGTT..................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........................................A---ACATCAGC---------AACAT---CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501010000
...................................................................AT---CAGCAGCAG---CAGCA------GCAAC---------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102010001
............................................................................AGCAG---CAGCA------GCAAC---------------------------AGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................19190.051000001
.....................................................GC---------AACAT---CAGCAGCAG---CAGCA------GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
droBip1
CGATTTAATCAGC------GACAGCAACAGTACAT------------------GCAAC------AGCAA---CAGCAGCAG---CAGCA------ACAAC---------------------------AGTTGCACACATAATGGACATTGATTTTAATTAGATTTAATTAGAAACTTGGTTAGGTCGGGTATACTGTGGACTGAATCTATATATATATTTTTCCTATAATGTATTGCTTTTAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGTTTGCCAG----------------CTACCGAATGTGTAATATTTTCGCTTTCCGTTCA-------------TCA--TT-------AAATTGTATTTGTTTGTTTG-----TAAGC--SizeHit CountTotal NormTotal
No Reads
dp5
T----CCAG---------------------------------CA---ACAGCAGCAAC------AGCAG---CAGCAGCAG---CAGCA------GCAGC---------------------------AGCTCCC------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................AG---CAGCA------GCAGC---------------------------AGCTCCC------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.0010100000000
.............................................................................GCAG---CAGCA------GCAGC---------------------------AGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
........................................................AC------AGCAG---CAGCAGCAG---CAGCA------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000020000
..............................................................................CAG---CAGCA------GCAGC---------------------------AGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
........................................................AC------AGCAG---CAGCAGCAG---CAGCA------GCAGC---------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000001000
.....................................................GCAAC------AGCAG---CAGCAGCAG---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
..................................................GCAGCAAC------AGCAG---CAGCAGCAG---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
droPer2
CAACAGCAG---------------------------------CA---ACAGCAGCAGC------AGCAA---CAGCAGCAG---CAGCA------GCAGC---------------------------ATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......AG---------------------------------CA---ACAGCAGCAGC------AGCAA---CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102002000
droWil2
AGATTTCAT---------------------------------CA---GAGGCAGCAGC------AGCAG---CAACAACAACAACAGCAATAACAAATTC-----------------------------------------------------------------------------------------------------------------------------------------------------A-TTAAGA-----GAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......CAT---------------------------------CA---GAGGCAGCAGC------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
droVir3
CAGCAACAG---------------------------------CA---GCAGCAACAGC------AG------CAACAGCAG---CAACA------GCATC---------------------------ATGTGCC------------------------------------------------------------------------------------------------------------------TATATAGAA------------------------------------------------------ATTAGATCAATATCTTTATTTATTTATAAATTGTTT-TACGT----GGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................AGC------AG------CAACAGCAG---CAACA------GCATC---------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................2460.332000000000000000001000000000000100000000000000000000000000000000
........G---------------------------------CA---GCAGCAACAGC------AG------CAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204004000000000000000000000000000000000000000000000000000000000000
..................................................GCAACAGC------AG------CAACAGCAG---CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
.........................................................C------AG------CAACAGCAG---CAACA------GCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101000000000000001000000000000000000000000000000000000000000000000
......................................................CAGC------AG------CAACAGCAG---CAACA------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000010001000000000000000000000000000000000000000000
.........................................................................AACAGCAG---CAACA------GCATC---------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................19140.071000000000000000000000000000000000000100000000000000000000000000
.......................................................AGC------AG------CAACAGCAG---CAACA------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
..........................................CA---GCAGCAACAGC------AG------CAACAGCAG---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000010000
...........................................A---GCAGCAACAGC------AG------CAACAGCAG---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000010000000000000000000000000000000000000000
........G---------------------------------CA---GCAGCAACAGC------AG------CAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..GCAACAG---------------------------------CA---GCAGCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
....AACAG---------------------------------CA---GCAGCAACAGC------AG------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....AACAG---------------------------------CA---GCAGCAACAGC------AG------CAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
...........................................A---GCAGCAACAGC------AG------CAACAGCAG---CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000100000000000000000000000000000000000000000000
.......AG---------------------------------CA---GCAGCAACAGC------AG------CAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
droMoj3
CGACGCCAG---------------------------------CA---GCAGCAGCAGC------AGCAG---CAGCAGCAGCGGCAGCG------GCAGC------AGC------------------ATCT--------------------------------------------------------------------------------------------------------------------------TTGA-----TGCTG------------AGGCTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................GC------AGCAG---CAGCAGCAGCGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000020
................................................................AGCAG---CAGCAGCAGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
droGri2
CAACAGCAG---------------------------------CA---ACAGCAGCAAC------AGCAG---CAGCAGCAG---CAGCA------GCAGC---------------------------ATCAGCT------------------------------------------------------------------------------------------------------------------CATTAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......AG---------------------------------CA---ACAGCAGCAAC------AGCAG---CAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110

Generated: 05/18/2015 at 11:29 PM