dsi_26239

ATGAAAGAAATGTTTTATTCTCCATGATCTTAGGGAGAACCGCGGGGAATGCAGGCAGCGTTCTGGCCACCACCAGAAAAAACAGTGGCAGCACCCGGAGCAGCAGCTCCGCCGATAGCTGTGACGGTTTATCGCTCCTCGGCCCCACCCATTCACTCAACGAGCTCCAGGTGCTTGAACGGAGGCGGCGACCACGTCAGATTCGCCCCAGCCAGAGAAACAGTCACAGCAACAGTTCCAGTGAGGAACT *******************************************************************************************************.(((((((((.(((.((((....)))).)))..))))..................(((((.......)))))..)))))....************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
................................................................................................................................................................................................CACGTCAGATTCGCCCCAGC......................................	20	0	1	2.00	2	2	0	0	0	0	0	0	0
..........................................................................................................................................................................GTGCTTGAACGGAGGCGG..............................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0
.........................................................................................................GCTCCGCCGATAGCTGTGACGGTT.........................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................................................................................................GCTTGAACGGAGGCGGCGACCACGTCA...................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................GAGGCGGCGACCACGGTA...................................................	18	2	4	0.25	1	0	0	0	0	0	1	0	0
...............................................................................................................CCGATAGCTGTGTCGATT.........................................................................................................................	18	2	8	0.25	2	0	1	0	0	0	0	0	1
..............................................................................................................GCCGATAGCTGTGTCGTT..........................................................................................................................	18	2	9	0.22	2	0	2	0	0	0	0	0	0
......................................................................................................................................................................................AGGCGGGGACGACGTCA...................................................	17	2	11	0.18	2	0	0	0	0	0	2	0	0
...........................................................................................................................................................................TGCTTGAAGGGAGGCGGA.............................................................	18	2	6	0.17	1	0	0	0	0	0	0	1	0
...........................................................................................................TGGGCCGATAGCTGTGTCGGTTT........................................................................................................................	23	3	6	0.17	1	0	1	0	0	0	0	0	0
..............................................................................................................GCCGATAGCTGTGTCGG...........................................................................................................................	17	1	7	0.14	1	0	1	0	0	0	0	0	0
..............................................................................................................GCCGATAGCTGTGTCGATT.........................................................................................................................	19	2	7	0.14	1	0	1	0	0	0	0	0	0
..............................................................................................................GCCGATAGCTGTGTCGCT..........................................................................................................................	18	2	9	0.11	1	0	1	0	0	0	0	0	0
................................................................................................................................ATATCGCTCCTCGGACC.........................................................................................................	17	2	10	0.10	1	0	1	0	0	0	0	0	0
..............................................................................................................GCCGATAGCTGTGTCGATTA........................................................................................................................	20	3	10	0.10	1	0	1	0	0	0	0	0	0
...........................................................................................................TCCGACGATCGCTGTGA..............................................................................................................................	17	2	11	0.09	1	0	0	0	0	0	0	1	0
.........ATGTTTGATTCTCCA..................................................................................................................................................................................................................................	15	1	17	0.06	1	0	1	0	0	0	0	0	0
..................................................................................................................................ATCGCTTCTCGGCACCA.......................................................................................................	17	2	18	0.06	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................GGTTACCACGTCAGA.................................................	15	2	20	0.05	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................................TTGTACGGAGGGGGCG............................................................	16	2	20	0.05	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GTACCAGTGAAGAAC.	15	2	20	0.05	1	0	0	0	0	0	0	1	0

TACTTTCTTTACAAAATAAGAGGTACTAGAATCCCTCTTGGCGCCCCTTACGTCCGTCGCAAGACCGGTGGTGGTCTTTTTTGTCACCGTCGTGGGCCTCGTCGTCGAGGCGGCTATCGACACTGCCAAATAGCGAGGAGCCGGGGTGGGTAAGTGAGTTGCTCGAGGTCCACGAACTTGCCTCCGCCGCTGGTGCAGTCTAAGCGGGGTCGGTCTCTTTGTCAGTGTCGTTGTCAAGGTCACTCCTTGA ************************************************************.(((((((((.(((.((((....)))).)))..))))..................(((((.......)))))..)))))....*******************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..........AAAAAATAGGAGGTACTAGGAT..........................................................................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0
...............................................................TCGGGTGGTGGTCTTATTTGT......................................................................................................................................................................	21	3	5	0.20	1	0	0	1	0	0
.....................................................................................................................................................GTAACTGAGTTGCTC......................................................................................	15	1	6	0.17	1	0	1	0	0	0
............................................................................TTATTTGTCAGCGTCGTTGGC.........................................................................................................................................................	21	3	8	0.13	1	0	1	0	0	0
.....................................................................................................................................................................................................................TGTCTTAGTCAGTGTCGTTAT................	21	3	9	0.11	1	0	1	0	0	0
.............................AATTACTCTTGGCGACCCTT.........................................................................................................................................................................................................	20	3	10	0.10	1	0	0	0	1	0
.........................................................................................................................................................................................................AAGCGCAGTCGGTCTCT................................	17	2	10	0.10	1	0	1	0	0	0
..........................................................................................................................................................................CTCGAACTTGCTTCCTCCG.............................................................	19	3	12	0.08	1	0	0	0	1	0
..................................................................................................................................................TGGGTAAGTGTGTTG.........................................................................................	15	1	14	0.07	1	0	0	0	0	1
..................................................................................................................................................................................................GCAGTCTGCGCGGGGT........................................	16	2	20	0.05	1	0	0	0	0	1
..............................................................................................................................................GGGGATGGTAAGTGAG............................................................................................	16	2	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:21406905-21407154 +	dsi_26239	ATG---------AAAGA-------AA-TGTTTTATTCTCCATG-ATCTTAGGGAGAACCGCGGGGAATGCAGGCAGCGTTCTGGCCACCACCAGAAAAAACA---G---TGGC------AGCACC---------------------------------------CGGAGCAGCAGCTCCGCCGATAG------------------------------CTGTGACGGTTTATCGCTCCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGGTGCTTGAACGGAGGCGG---CGACCACGTCAGATTCGCCCCAGCCAGAGAAACAGTCACAGCA------------------------------------A---------------------CAGTTCCAGTGAGGAACT---------------
droSec2	scaffold_28:750411-750621 +		AGC------------------------------------------------------CCAAGA---CAAACGGCAGCGTTCTGGCCACCACCAGAAAAAACA---G---TGGC------AGCACC---------------------------------------CGGAGCAGCAGCTCCGCCGATAG------------------------------CTGTGACGGTTTATCGCTCCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGGTGCTTGAACGGAGGCGG---CGACCACGTCAGATTCGCCCCAGCCAGAGAAACAGTCAAAGCA------------------------------------A---------------------CAGTTCCAGTGAGGAACT---------------
dm3	chr2L:22142986-22143196 +		AGC------------------------------------------------------CCAAGA---CAAACGGCAGCGTTCTGGCCACCACCAGACAAAATA---G---TGGC------AGCACC---------------------------------------CGGAGCAGCAGCTCCGCCGATAG------------------------------CTGTGACGGTATATCGCTCCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGGTGCTTGAACGGAGGCGA---CGACCACGTCATATTCGCCCCAGCCAGAGAAACTGTCACAGCA------------------------------------A---------------------CAGTTCCAGTGAGGAACT---------------
droEre2	scaffold_4845:2273814-2274024 -		AAC------------------------------------------------------TTAAGA---CAAACGGCAAAGCTCTGGCCACCACCAGCAAAAACA---G---TAGC------ATCAAC---------------------------------------CGGAGCAGCAGTTCCGCCGATAG------------------------------CTGTGACGGTTTATTGCTTCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGCAGCTTGGACGGAGGCGA---CGCCCACGTCACAGTCACTCCAGCCAGAGGAACTGTCACATCA------------------------------------A---------------------CAGCTCCAGTGAGGAACT---------------
droYak3	2R:481503-481713 -		AAC------------------------------------------------------CCAAGG---GAAACGGCAGAACTCTGGCCACCACCAGCCAAAACA---G---TAGC------AGCACC---------------------------------------CGGGGCAGCAGTTCCGTCGATAG------------------------------TTGTGACGGTTTATCACTTCTAGG------------------------------------------------CCCCAC---CCATTC---ACTTAACGAGCTCCATCAGCTTGAACGGAGGCGA---CGCCGACGTCACATTCAACCTAGCCAGAGAAACTATAACAACA------------------------------------A---------------------TAGCTCCAGTGAGGAACT---------------
droEug1	scf7180000407335:43197-43403 +		G------------------------------------------------------------------------CTGCGCTCTGGCCAGACAAAAA-AAAAAA---T---CAGC------CATTA------------------------CTCCCGC---CGCAGCCATAGCGCCAGTTCTATCGATAG------------------------------CTGCAACGG---------CATTCA------------------------------------------------CGCCAC---ACAATC---ACTTAACAAGCTGCAGTATATTGGGCGGTGCCGA---TGCTACCATTACAATCATTCTAGCCAGTGGAACTGCGACAGCA------------------------------------ACAA---------AG---CAAGAAGCTTCGCCGAGGGGCT---------------
droBia1	scf7180000301483:6075-6133 +		GCC-----------------------------------------------------------------------------------GCTTCCATTAAAAACA---G---C---------ATCA---------------------------------------GCCGGAGCCCCAGTTCCATTGACGG------------------------------CTGCGACGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414595:4255-4503 -		ATA-------------------------------------------------------CGTGG---CCAACGGCAACGTTCTGGCCACCACCAGTAAAAACA---G---CAGC------AGCAA------------------------CGTCCGC---CGCAGCCGGAGCAGCAGTTCCGTCGAGAG------------------------------CTGCGACGGTTCTTCGCTCCTAGT------------------------------------------------TGCTAC---CCACTC---TCTCAACGAACTTCAGCAGTTTGGACGACGGCGA---CGCTCACGTCATATTCCCCATAACTATCGCAACTGTCACAGCA------------------------------------ACAGCA------GCG---CGAGTAGCTCCAGCGAGGAGTTGGACTTGGAGCGGGA
droEle1	scf7180000490616:4817-5014 -		TAT--------------------------------------------------------TCCC---CTTACAGCTCCGTTCTGGGCCCAAGCAGCCACAGCT---T------C------CGTA---------------------------------------GCCAGAGCAGCAGTTCCAACGACAG------------------------------CAGCT------TG------CCTAC------------------------------------------------AACGAC---CTCTTT---TCCCAACGAACTGCAACAGCTTGGACTGCGCCGC---CGCCTGCGTCACAACCAGCA------------------CACGA------------------------------------ACAGCA------GCGTGAGTAACAGCTGCAGCGAGGCGTTTTTCTTT--------
droRho1	scf7180000780111:3950-4157 +		G-----------------------------------------------------------------------GCTTCGTTCTGGCCACCAGCAGCCACCGC------------------CGCA---------------------------------------GCCACAGCAGGAGTTCTGCTGGCAG------------------------------CAGC------TCGCC---------------------------------------------------------CACCACGAACTCGTT---GCCCAACGAGCTGCAGCAATTGGGACGGCGCCGC---CGTCCGCGCAACATCCGTCCCAATCAACAGAACTATAACAGCA------------------------------------AAAGCA------GCGTGAGTAGCAGCTCTAGCGAGGCGCTTAACTTGGAGCGAG-
droFic1	scf7180000453158:51560-51824 -		AGG---------CCCCA--------------------------------C-------ACGAGG---AGCACGGCTACGTTCTGGCCACCAACAGCAGCAGCA---G---TAGC------AGCCA------------------------CCGCCGC---CGTAGCCGGAACAGAAGTTCCGCCGACAG------------------------------CAGCGACGGCTCGCCCCCCCTGGG------------------------------------------------CACCAC---CCATTCCCTCCCCAACGAGCTGCAGCAGCTCGGACGACGAGGT---CGCCCGCGTCGACTTCGCACCACTAAGAGGGACTGCGACAGCG------------------------------------ACAGCAGCAGCAGCG---CGAGCAGTTCCACCGAACACCTTGACTTGAAGCGAGA
droKik1	scf7180000302808:7607-7860 +		AGC---------AG-------AGCAATTGT-TGATAC-----------AGAGGC----ACACA---CCCACGGCTACGTGCTGGCCACCACTAGCAGCAACACAAACGAAATCAGCAGCGGGAGC---------------------------------------CGCAGCAGCAGCTCATCCTCG---------------------------------GGCCACTGTTCGCCGCTCCTGGG----T--------------------------------------G--T-CACCAC---CAATTCGCTACCCAGCGGGCTGCAACAGTTGGGCCGTCGGCGT---CGACCCCGTCTCAGCCGCCGCAGCCAGCGGAACTGCCAAAGTA------------------------------------GTG---------------GCAGCAGCTCCAGTGACGGGTT---------------
droAna3	scaffold_12984:714282-714548 +		GTC------GTCGCCTAACACTGTACTCGC-CTATCC--AGAGCTCCCTACTTAC-------G---TCACCGGCTACGTGCTGGCCACTAAAAGCAAACGAA---TCACCAGC------AGCAGT---------------------------------------CGGAGCAGCAGCAGCTCCTCTGC------------------------------GGCCGATTTCTCCCCGCCTCTGGG------------------------------------------------CACTAC---CCATTCGCTTCCCAACGAGCTGCAGCAACTCGGACGTCGACGT---AGATCGCGCAACAGCCGGTCCCACCATCGAAACGCTCGCAGTA------------------------------------ACAGCA------GCA---GCGCGAGTTCCGGCGACGAGTG---------------
droBip1	scf7180000395865:13732-14002 +		CTA---------AAAC-----AGTAGTCAT-CGATCC--AGCGCTCCCTACTTAC-------G---TCACCGGCTACGGGCTGGCCACTAACAGCAAAAGAA---CGACGAAC------AGCAGT---------------------------------------CGGAGCAGCAGCAGCTCCTCTGC------------------------------TGCAGATTTTTCCCCGCCCCTAGG------------------------------------------------CACCAC---ACATTCGCTTCCCAACGAGCTGCAGCAACTCGGACGTCGGCGT---AGATCGCGCAACAGCCGGTCCCACCAACGAAATTGTCGCAGTA------------------------------------ACAGCAACAGCAGCG---GCGCAAGTTCCGGCGACGAGTGGGAGGC---------
dp5	4_group5:1859015-1859278 -	dps_1731	GTC---------GTCCA-------AG-TGTT-------------TTCCAGCGGAAAA-CGATA---TACACGGCTACGTGCTGGCCAGCAGCGGAAATCCAC---G---------------TTG------------------------CAGTCGG---AGTAGCCGCAGCAGCAGCTCCTCCTCCTC------------------------------CGCAGACTGCTCCCCTGTCCTTGG------------------------------------------------GGCCAC---CTCCCT---GCCCAACGAGCTGCAGCAATTGGGGCGCCGACGAACGCGTACACGCCACAATCGTCCCGCGCCACGGAATTGCCACAGCA------------------------------------ACAGCA------GCGGCGGCAACAGCTCCAGCGAGGACTACGACTT---------
droPer2	scaffold_5:6264342-6264611 -		GTC---------GTCCA-------AG-TGTT-------------TTCCAGCGGAAAA-CGATA---TACACGGCTACGTGCTGGCCAGCAGCGGAAATCCAC---G---TTGC------AGTCG------------------------GAGTAGC---CGCAGCAGCAGCAGCAGCTCCTCCTCCTC------------------------------CGCAGACTGCTCCCCTGTCCTTGG------------------------------------------------GGCCAC---CTCCCT---GCCCAACGAGCTGCAGCAATTGGGGCGCCGACGAACGCGTACGCGCCACAATCGTCCCGCGCCACGGAATTGCCACAGCA------------------------------------ACAGCA------GCGGCGGTAACAGCTCCAGCGAGGACTACGACTT---------
droWil2	scf2_1100000004521:6902118-6902353 -		TCT----CCATCGTC-------------------------------------------TACGG---ATTACGGCTACGTGCTGGCCACTAAACGAAATACGG---C------G------AGTAAA---------------------------------------AGTGGTCGAAGTTCCTCTCCTTC------------TGCCTCTTCC---TCGTCGGCGGAGAGTTCACCCGTTCTGGG------------------------------------------------TGCCAT---TAGTTT---ACCCAACGAACTACCCGATTTGGGTCGACGGCGG---AGGCCACGTCAAAGACGCAACTGTCA------------GAGTC------------------------------------ACAGCA------GTG---GGCATAGTTCGAGCGAAGAGGCTGATTT---------
droVir3	scaffold_12963:2596317-2596596 -		GAG--GTTCGTCGCCCA-------AA----T-------------TTCTAACGGAC-------A---ACAACAGCTACGGCCTGGCCAACAACAAGAGCAGCA---G---CAGC------AGCAGC---------------------------------------AGCAGCAGCAGCGCCTCCTCCTC------------CGCCTCCTCCACCACATCCGCCGAGTGCTCGCCCGTGCTG-TCACGAATCAGCACAGCGACAGCCTTA-----------------------GCCGG---CAGCGT---GCCCAACGAGCTGCAGCAGCTGGGCAGACGGAGG---CGAACACGTCGCCAGCA--GCA-GCAGAGGAATTGCCAGAGCA------------------------------------GCGA---------GGACGGGCACAGCTCTAGCGAGGA------------------
droMoj3	scaffold_6500:12794210-12794452 -		GAG--GTTCGTCGCCCA-------AA----T-------------TTCCAACGGAC-------A---ACAACAGCTACGTGCTGGCCAACAACAAGAGCAACA---A---CAGC------AGC---------------------------------------------AGCAGCAGCACCACCACCAGCGGCTCCTCCTCTTCCTC------------TTCATCCTCCTCGCCAGTGTTG-GTGCGT------------ACAGCTTCA-----------------------GGCGG---CAGCGT---GCCCAACGAGCTGCAGCAGCTGGGCAGACGTCGA---CGCGCTCGTCGCC--------------AGCAACAGCCACAACA------------------------------------GCAGCA------GCA---GC-----------AAAGGAATT---------------
droGri2	scaffold_15252:2209949-2210275 -		GCGAGGTTCGTCGCCCA-------AC----T-------------TGCTAACGGA----CAACA---ACAACAGCTACGTGCTGGCTACCAACAACAACGCCA---A---CAAC------AACAACCACAACGACGACGACGGGAGCAGCAACAGCAATAGT---AGCAGCAGCAGTAGCTCCTC---------------------------------------------GCCAGTGT---------------------------TTAGTCGAGAGGGAGCCGGAGGCTCATCCAC---ATCGGT---GCCCAACGAGCTGCAGCAGCTGGGCAGACGACGG---CGCACACAGCAGCAACAGCGTCGTCAGCAGCGTCGCCACGAGACGGGTTCGGGTGCGGGTGCGGGTGCTGGTGGTGGTGGTG---------GCGGTGGGCACAGTTCTAGCGAGGATCT---------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATG---------AAAGA-------AA-TGTTTTATTCTCCATG-ATCTTAGGGAGAACCGCGGGGAATGCAGGCAGCGTTCTGGCCACCACCAGAAAAAACA---G---TGGC------AGCACC---------------------------------------CGGAGCAGCAGCTCCGCCGATAG------------------------------CTGTGACGGTTTATCGCTCCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGGTGCTTGAACGGAGGCGG---CGACCACGTCAGATTCGCCCCAGCCAGAGAAACAGTCACAGCA------------------------------------A---------------------CAGTTCCAGTGAGGAACT---------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................CACGTCAGATTCGCCCCAGC..............................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GTGCTTGAACGGAGGCGG---......................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................GCTCCGCCGATAG------------------------------CTGTGACGGTT..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GCTTGAACGGAGGCGG---CGACCACGTCA...........................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGC------------------------------------------------------CCAAGA---CAAACGGCAGCGTTCTGGCCACCACCAGAAAAAACA---G---TGGC------AGCACC---------------------------------------CGGAGCAGCAGCTCCGCCGATAG------------------------------CTGTGACGGTTTATCGCTCCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGGTGCTTGAACGGAGGCGG---CGACCACGTCAGATTCGCCCCAGCCAGAGAAACAGTCAAAGCA------------------------------------A---------------------CAGTTCCAGTGAGGAACT---------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................................................................................................................................................................................AACAGTCAAAGCA------------------------------------A---------------------CAGT.............................	18	1	3.00	3	0	0	3	0
............................................................................................................................................................................................................................................................................................................................GCTCCAGGTGCTTGAACGGAGGCGG---C.....................................................................................................................................	26	1	2.00	2	0	0	2	0
..............................................................................................................................................................................GCTCCGCCGATAG------------------------------CTGTGACGGT...........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................AGGTGCTTGAACGGAGGC...........................................................................................................................................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................AAACAGTCAAAGCA------------------------------------A---------------------CAGT.............................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................GCTCCAGGTGCTTGAACGGAGGCGG---......................................................................................................................................	25	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................AACAGTCAAAGCA------------------------------------A---------------------CAGTT............................	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................GTGCTTGAACGGAGGCGG---CGACCACG..............................................................................................................................	26	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................AGCTCCAGGTGCTTGAACGGAGGCGG---C.....................................................................................................................................	27	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................AC---CCATTC---ACTCAACGAGC................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................CGCCCCAGCCAGAGAAACAGT..................................................................................................	21	1	1.00	1	0	0	1	0

dm3

AGC------------------------------------------------------CCAAGA---CAAACGGCAGCGTTCTGGCCACCACCAGACAAAATA---G---TGGC------AGCACC---------------------------------------CGGAGCAGCAGCTCCGCCGATAG------------------------------CTGTGACGGTATATCGCTCCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGGTGCTTGAACGGAGGCGA---CGACCACGTCATATTCGCCCCAGCCAGAGAAACTGTCACAGCA------------------------------------A---------------------CAGTTCCAGTGAGGAACT---------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................ACGAGCTCCAGGTGCTTGAACGGAGGC...........................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCCAGGTGCTTGAACGGAGGC...........................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................C---CCATTC---ACTCAACGAGCTCC.............................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ACTCAACGAGCTCCAGGTGCT......................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CGA---CGACCACGTCATATTCGCCCC.................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGGAGGCGA---CGACCACGTCATATTC......................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GCAGCAGCTCCGCCGATAG------------------------------CT...................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................A---G---TGGC------AGCACC---------------------------------------CGGAGCAGC.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GCTCCAGGTGCTTGAACGGAGGC...........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCCAGGTGCTTGAACGGAGGCGA---......................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCCGCCGATAG------------------------------CTGTGAC..............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CGAGCTCCAGGTGCTTGA...................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CATTC---ACTCAACGAGCTCCAGGTGC.......................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACGGTATATCGCTCCTCGG------------------------------------------------CC...........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ACTCAACGAGCTCCAGGTGCTTGAACGGA..............................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CCAGGTGCTTGAACGGAGGCG..........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAC------------------------------------------------------TTAAGA---CAAACGGCAAAGCTCTGGCCACCACCAGCAAAAACA---G---TAGC------ATCAAC---------------------------------------CGGAGCAGCAGTTCCGCCGATAG------------------------------CTGTGACGGTTTATTGCTTCTCGG------------------------------------------------CCCCAC---CCATTC---ACTCAACGAGCTCCAGCAGCTTGGACGGAGGCGA---CGCCCACGTCACAGTCACTCCAGCCAGAGGAACTGTCACATCA------------------------------------A---------------------CAGCTCCAGTGAGGAACT---------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................AC---CCATTC---ACTCAACGAGCTCCAGGT.........................................................................................................................................................	26	1	16.00	16	0	0	0	0	0	0	16
..............................................................................................................................................................................................................................................................................................................................TCCAGCAGCTTGGACGGAGG............................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.....................................................................ACGGCAAAGCTCTGGCCACCAC...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................ATCAAC---------------------------------------CGGAGCAGCAGTTC............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................CA---G---TAGC------ATCAAC---------------------------------------CGGAGCAGCAGTTCC...........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................GCAAAAACA---G---TAGC------ATCAAC---------------------------------------CGGAGC....................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................AGTTCCGCCGATAG------------------------------CTGTGACGGT...........................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................CGCCGATAG------------------------------CTGTGACGGT...........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTGGACGGAGGCGA---CGCCCACGT.............................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0

droYak3

AAC------------------------------------------------------CCAAGG---GAAACGGCAGAACTCTGGCCACCACCAGCCAAAACA---G---TAGC------AGCACC---------------------------------------CGGGGCAGCAGTTCCGTCGATAG------------------------------TTGTGACGGTTTATCACTTCTAGG------------------------------------------------CCCCAC---CCATTC---ACTTAACGAGCTCCATCAGCTTGAACGGAGGCGA---CGCCGACGTCACATTCAACCTAGCCAGAGAAACTATAACAACA------------------------------------A---------------------TAGCTCCAGTGAGGAACT---------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------------------------A---------------------TAGCTCCAGTGAGGAACT---------------	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGCTCCATCAGCTTGAACGGAGG............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AGCTTGAACGGAGGCGA---CGCCGACGT.............................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................AACGGCAGAACTCTGGCCACCACC..................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................ACAACA------------------------------------A---------------------TAGCTCCAGTGAGGA..................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................AGTTCCGTCGATAG------------------------------TTGT.................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTCCGTCGATAG------------------------------TTGTGAC..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................AGC------AGCACC---------------------------------------CGGGGCAGCAGTTCCGT.........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................A---G---TAGC------AGCACC---------------------------------------CGGGGC....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CACATTCAACCTAGCCAGAG.........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CCGACGTCACATTCAACCTAGCC.............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................CCAAGG---GAAACGGCAGAACTCTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTCACATTCAACCTAGCCAGAGAAACT....................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................C---ACTTAACGAGCTCCATCAGCT......................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CGTCACATTCAACCTAGCCAGAG.........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................GCAGTTCCGTCGATAG------------------------------TTGT.................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................ACAACA------------------------------------A---------------------TAGCTCCAGTGAGG...................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................CAGCCAAAACA---G---TAGC------AGC....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GCAGTTCCGTCGATAG------------------------------TTGTGAC..............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CATCAGCTTGAACGGAGGCGA---CGCCGAC...............................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAGCAGTTCCGTCGATAG------------------------------TTGTGACG.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

G------------------------------------------------------------------------CTGCGCTCTGGCCAGACAAAAA-AAAAAA---T---CAGC------CATTA------------------------CTCCCGC---CGCAGCCATAGCGCCAGTTCTATCGATAG------------------------------CTGCAACGG---------CATTCA------------------------------------------------CGCCAC---ACAATC---ACTTAACAAGCTGCAGTATATTGGGCGGTGCCGA---TGCTACCATTACAATCATTCTAGCCAGTGGAACTGCGACAGCA------------------------------------ACAA---------AG---CAAGAAGCTTCGCCGAGGGGCT---------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCC-----------------------------------------------------------------------------------GCTTCCATTAAAAACA---G---C---------ATCA---------------------------------------GCCGGAGCCCCAGTTCCATTGACGG------------------------------CTGCGACGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATA-------------------------------------------------------CGTGG---CCAACGGCAACGTTCTGGCCACCACCAGTAAAAACA---G---CAGC------AGCAA------------------------CGTCCGC---CGCAGCCGGAGCAGCAGTTCCGTCGAGAG------------------------------CTGCGACGGTTCTTCGCTCCTAGT------------------------------------------------TGCTAC---CCACTC---TCTCAACGAACTTCAGCAGTTTGGACGACGGCGA---CGCTCACGTCATATTCCCCATAACTATCGCAACTGTCACAGCA------------------------------------ACAGCA------GCG---CGAGTAGCTCCAGCGAGGAGTTGGACTTGGAGCGGGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAT--------------------------------------------------------TCCC---CTTACAGCTCCGTTCTGGGCCCAAGCAGCCACAGCT---T------C------CGTA---------------------------------------GCCAGAGCAGCAGTTCCAACGACAG------------------------------CAGCT------TG------CCTAC------------------------------------------------AACGAC---CTCTTT---TCCCAACGAACTGCAACAGCTTGGACTGCGCCGC---CGCCTGCGTCACAACCAGCA------------------CACGA------------------------------------ACAGCA------GCGTGAGTAACAGCTGCAGCGAGGCGTTTTTCTTT--------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

G-----------------------------------------------------------------------GCTTCGTTCTGGCCACCAGCAGCCACCGC------------------CGCA---------------------------------------GCCACAGCAGGAGTTCTGCTGGCAG------------------------------CAGC------TCGCC---------------------------------------------------------CACCACGAACTCGTT---GCCCAACGAGCTGCAGCAATTGGGACGGCGCCGC---CGTCCGCGCAACATCCGTCCCAATCAACAGAACTATAACAGCA------------------------------------AAAGCA------GCGTGAGTAGCAGCTCTAGCGAGGCGCTTAACTTGGAGCGAG-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGG---------CCCCA--------------------------------C-------ACGAGG---AGCACGGCTACGTTCTGGCCACCAACAGCAGCAGCA---G---TAGC------AGCCA------------------------CCGCCGC---CGTAGCCGGAACAGAAGTTCCGCCGACAG------------------------------CAGCGACGGCTCGCCCCCCCTGGG------------------------------------------------CACCAC---CCATTCCCTCCCCAACGAGCTGCAGCAGCTCGGACGACGAGGT---CGCCCGCGTCGACTTCGCACCACTAAGAGGGACTGCGACAGCG------------------------------------ACAGCAGCAGCAGCG---CGAGCAGTTCCACCGAACACCTTGACTTGAAGCGAGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGC---------AG-------AGCAATTGT-TGATAC-----------AGAGGC----ACACA---CCCACGGCTACGTGCTGGCCACCACTAGCAGCAACACAAACGAAATCAGCAGCGGGAGC---------------------------------------CGCAGCAGCAGCTCATCCTCG---------------------------------GGCCACTGTTCGCCGCTCCTGGG----T--------------------------------------G--T-CACCAC---CAATTCGCTACCCAGCGGGCTGCAACAGTTGGGCCGTCGGCGT---CGACCCCGTCTCAGCCGCCGCAGCCAGCGGAACTGCCAAAGTA------------------------------------GTG---------------GCAGCAGCTCCAGTGACGGGTT---------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GTC------GTCGCCTAACACTGTACTCGC-CTATCC--AGAGCTCCCTACTTAC-------G---TCACCGGCTACGTGCTGGCCACTAAAAGCAAACGAA---TCACCAGC------AGCAGT---------------------------------------CGGAGCAGCAGCAGCTCCTCTGC------------------------------GGCCGATTTCTCCCCGCCTCTGGG------------------------------------------------CACTAC---CCATTCGCTTCCCAACGAGCTGCAGCAACTCGGACGTCGACGT---AGATCGCGCAACAGCCGGTCCCACCATCGAAACGCTCGCAGTA------------------------------------ACAGCA------GCA---GCGCGAGTTCCGGCGACGAGTG---------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................GCAGCAACTCGGACGTCGACGT---AGA...................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0
.........GTCGCCTAACACTGTACTCGC-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................GAA---TCACCAGC------AGCAGT---------------------------------------CGGAGCAGCA................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGTCGACGT---AGATCGCGCAACAGCCG.....................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CGAAACGCTCGCAGTA------------------------------------ACAGCA------GC.........................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGCAACTCGGACGTCGACGT---AGA...................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.......................................................................................CTAAAAGCAAACGAA---TCACCAGC------AGCA...................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AGTA------------------------------------ACAGCA------GCA---GCGCG................................	18	1	1.00	1	1	0	0	0	0	0
.........GTCGCCTAACACTGTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GT---AGATCGCGCAACAGCCGGT...................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................GT---AGATCGCGCAACAGCCG.....................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................AAAGCAAACGAA---TCACCAGC------AGC....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................A---TCACCAGC------AGCAGT---------------------------------------CGGAGC....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................CTATCC--AGAGCTCCCTACTTAC-------G---T...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CCCAACGAGCTGCAGCAACTCGGAC.................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................CTAAAAGCAAACGAA---TCACCAGC------AGC....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GCAGCAACTCGGACGTCGACGT---A.....................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................GC------AGCAGT---------------------------------------CGGAGCAGCAGC..............................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0

droBip1

CTA---------AAAC-----AGTAGTCAT-CGATCC--AGCGCTCCCTACTTAC-------G---TCACCGGCTACGGGCTGGCCACTAACAGCAAAAGAA---CGACGAAC------AGCAGT---------------------------------------CGGAGCAGCAGCAGCTCCTCTGC------------------------------TGCAGATTTTTCCCCGCCCCTAGG------------------------------------------------CACCAC---ACATTCGCTTCCCAACGAGCTGCAGCAACTCGGACGTCGGCGT---AGATCGCGCAACAGCCGGTCCCACCAACGAAATTGTCGCAGTA------------------------------------ACAGCAACAGCAGCG---GCGCAAGTTCCGGCGACGAGTGGGAGGC---------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTC---------GTCCA-------AG-TGTT-------------TTCCAGCGGAAAA-CGATA---TACACGGCTACGTGCTGGCCAGCAGCGGAAATCCAC---G---------------TTG------------------------CAGTCGG---AGTAGCCGCAGCAGCAGCTCCTCCTCCTC------------------------------CGCAGACTGCTCCCCTGTCCTTGG------------------------------------------------GGCCAC---CTCCCT---GCCCAACGAGCTGCAGCAATTGGGGCGCCGACGAACGCGTACACGCCACAATCGTCCCGCGCCACGGAATTGCCACAGCA------------------------------------ACAGCA------GCGGCGGCAACAGCTCCAGCGAGGACTACGACTT---------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................AATTGGGGCGCCGACGAACGC.....................................................................................................................................	21	1	14.00	14	0	11	0	0	0	0	3	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATTGGGGCGCCGACGAACGC.....................................................................................................................................	20	1	5.00	5	0	4	0	0	0	0	1	0	0	0
...................................................................................................CAC---G---------------TTG------------------------CAGTCGG---AGTAGCCGCAG.....................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	0	0	1	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................CACGGAATTGCCACAGCA------------------------------------ACAGCA------GCGGC......................................	29	1	3.00	3	0	0	0	0	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................................................................................................................ATTGCCACAGCA------------------------------------ACAGCA------GCGGC......................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAGCTCCAGCGAGG...................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CAACGAGCTGCAGCAATTGGGGCGCC..............................................................................................................................................	26	1	2.00	2	0	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AATTGGGGCGCCGACGAACG......................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................GAAATCCAC---G---------------TTG------------------------CAGTCGG---AGTAGCC.........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTCCAGCGAGGACTAC..............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GTC---------GTCCA-------AG-TGTT-------------TTCCAGCGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGCGAGGACTACGA............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GCCACAATCGTCCCGCGC.............................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AC---CTCCCT---GCCCAACGAGCTGC.............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................GATA---TACACGGCTACGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CTGCAGCAATTGGGGCGCCGAC...........................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AC---CTCCCT---GCCCAACGAGCTGCA............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................A---TACACGGCTACGTGCTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAGCTCCAGCGAGGA..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................G-TGTT-------------TTCCAGCGGAAAA-CG..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TCGTCCCGCGCCACGGAATTGCC.................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCAATTGGGGCGCCGACGAACGC.....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................GATA---TACACGGCTACGTGCTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GCGTACACGCCACAATCGTCCCGCGC.............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................GGAAATCCAC---G---------------TTG------------------------CAGTCGG---A...............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATTGGGGCGCCGACGAACG......................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GCAGCAATTGGGGCGCCGAC...........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAC---CTCCCT---GCCCAACGAGCTGC.............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................GCGGAAATCCAC---G---------------TTG------------------------CAGTCGG---AGTAGC..........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTACACGCCACAATCGTCCCGC...............................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................TCCAC---G---------------TTG------------------------CAGTCGG---AGTAGC..........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------GCGGCGGCAACAGCTCCAGC.......................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................CGGCTACGTGCTGGCCAGCAGCGGAA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................GGGGCGCCGACGAACGCG....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TGCAGCAATTGGGGCGCCGAC...........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAGCTCCAGCGAGGAC.................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CCAACGAGCTGCAGCAATTGGGGC.................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................AA-CGATA---TACACGGCTACGTGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA------GCGGCGGCAACAGCTCCA.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GGCCAC---CTCCCT---GCCCAACGAGCTGCAGC..........................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CTGCAGCAATTGGGGCGCC..............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTCCAGCGAGGACT................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATTGGGGCGCCGACGAACGCGT...................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGCTGCAGCAATTGGGGCGCC..............................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CACGGAATTGCCACAGCA------------------------------------ACAGC..................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TGGGGCGCCGACGAACGCGTA..................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................GGAAAA-CGATA---TACACGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................AGTCGG---AGTAGCCGCAGCAGC.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CGTCCCGCGCCACGGAATT....................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTCCAGCGAGGACTAC..............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTCCCCTGTCCTTGG------------------------------------------------GGCCAC---CTCCCT---...........................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................CCAC---G---------------TTG------------------------CAGTCGG---AGTAGCCGCAGC....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------------------------ACAGCA------GCGGCGGCAACAGCTCC..........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................G-TGTT-------------TTCCAGCGGAAAA-CGATA---............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0

droPer2

GTC---------GTCCA-------AG-TGTT-------------TTCCAGCGGAAAA-CGATA---TACACGGCTACGTGCTGGCCAGCAGCGGAAATCCAC---G---TTGC------AGTCG------------------------GAGTAGC---CGCAGCAGCAGCAGCAGCTCCTCCTCCTC------------------------------CGCAGACTGCTCCCCTGTCCTTGG------------------------------------------------GGCCAC---CTCCCT---GCCCAACGAGCTGCAGCAATTGGGGCGCCGACGAACGCGTACGCGCCACAATCGTCCCGCGCCACGGAATTGCCACAGCA------------------------------------ACAGCA------GCGGCGGTAACAGCTCCAGCGAGGACTACGACTT---------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................ATTGGGGCGCCGACGAACGC.....................................................................................................................................	20	1	3.00	3	0	2	0	0	0	1
.........................................................................................................................................................................................................................CGCAGACTGCTCCCCTGTCCTTGG------------------------------------------------.............................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGCTCCAGCGAGGACTAC..............	23	1	1.00	1	0	1	0	0	0	0
..........................................................................................GCGGAAATCCAC---G---TTGC------AGTCG------------------------GA........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GAACGCGTACGCGCCACAATCGTCCC.................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................TGC------AGTCG------------------------GAGTAGC---CGCAGC..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............GTCCA-------AG-TGTT-------------TTCCAGCGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTACGCGCCACAATCGTCCC.................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCGGCGGTAACAGCTC...........................	18	1	1.00	1	0	1	0	0	0	0
................................................................................................ATCCAC---G---TTGC------AGTCG------------------------GAGT......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTACGCGCCACAATCGTCCCGCGC.............................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCCGACGAACGCGTACGCGCC............................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................CCAC---G---TTGC------AGTCG------------------------GAGTAGC---CGCAGC..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................AATCCAC---G---TTGC------AGTCG------------------------GA........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGCTCCAGCGAGGAC.................	20	1	1.00	1	1	0	0	0	0	0
GTC---------GTCCA-------AG-TGTT-------------TTCCAGCGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................GCGGAAATCCAC---G---TTGC------AGTCG------------------------GAGTAGC---................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AACGAGCTGCAGCAATTGGGGC.................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................CGGAAATCCAC---G---TTGC------AGTCG------------------------GA........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------------ACAGCA------GCGGCGGT...................................	18	2	0.50	1	0	1	0	0	0	0

droWil2

TCT----CCATCGTC-------------------------------------------TACGG---ATTACGGCTACGTGCTGGCCACTAAACGAAATACGG---C------G------AGTAAA---------------------------------------AGTGGTCGAAGTTCCTCTCCTTC------------TGCCTCTTCC---TCGTCGGCGGAGAGTTCACCCGTTCTGGG------------------------------------------------TGCCAT---TAGTTT---ACCCAACGAACTACCCGATTTGGGTCGACGGCGG---AGGCCACGTCAAAGACGCAACTGTCA------------GAGTC------------------------------------ACAGCA------GTG---GGCATAGTTCGAGCGAAGAGGCTGATTT---------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............C-------------------------------------------TACGG---ATTACGGCTACGTGCTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	1	5	1	1
..............C-------------------------------------------TACGG---ATTACGGCTACGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	0	3	3	0
..........................................................................................................................................................................................................CTCTTCC---TCGTCGGCGGAGAGTTCACC......................................................................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0
.............................................................................................GAAATACGG---C------G------AGTAAA---------------------------------------AGT.......................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AGTC------------------------------------ACAGCA------GTG---GGCATAGTTCGA.........................	25	1	2.00	2	0	1	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................GTCA------------GAGTC------------------------------------ACAGCA------GTG---GGC..................................	21	1	2.00	2	0	0	2	0	0
...........................................................................................................................................................................................................TCTTCC---TCGTCGGCGGAGA.............................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	1	0	0
...........CGTC-------------------------------------------TACGG---ATTACGGCTACGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	1	0
..........................................................................................................................................................................................................................................................................................................................................GTCGACGGCGG---AGGCCACGT.............................................................................................................................	20	1	2.00	2	0	0	1	1	0
.....................................................................................................................................................................................................................................................................................................................................TTTGGGTCGACGGCGG---AGGC..................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACCCGATTTGGGTCGACGGCGG---AGGC..................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTCA------------GAGTC------------------------------------ACAGCA------GTG---GG...................................	20	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................TT---ACCCAACGAACTACCCGATTTGG....................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...........................................................................................................................AA---------------------------------------AGTGGTCGAAGTTCCTCTCCT.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.....................................................................................CACTAAACGAAATACGG---C------G------.......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................GGCGGAGAGTTCACCCGTTCTGGG------------------------------------------------.............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................GAAGTTCCTCTCCTTC------------TGCCT..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CGCAACTGTCA------------GAGTC------------------------------------ACAGCA------GT.........................................	24	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CAAAGACGCAACTGTCA------------GAGTC------------------------------------ACAGC..................................................	27	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG---GGCATAGTTCGAGCGAAGAGGCT..............	26	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GGCATAGTTCGAGCGAAGAGGCT..............	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................GATTTGGGTCGACGGCGG---A.....................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................TC------------TGCCTCTTCC---TCGTCGGCGGAGA.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................................................AATACGG---C------G------AGTAAA---------------------------------------AGTGGTC...................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................GATTTGGGTCGACGGCGG---AGGCC.................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AGTC------------------------------------ACAGCA------GTG---GGCATAGTT............................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................GTCA------------GAGTC------------------------------------ACAGCA------GTG---GGCATAGTT............................	27	1	1.00	1	0	0	0	1	0
.........................................................................................AAACGAAATACGG---C------G------AGTAAA---------------------------------------AGT.......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TGTCA------------GAGTC------------------------------------ACAGCA------GTG---GG...................................	21	1	1.00	1	0	0	0	1	0
............GTC-------------------------------------------TACGG---ATTACGGCTACGTGCTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
.....................................................................................CACTAAACGAAATACGG---C------G------AGTA...................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.............TC-------------------------------------------TACGG---ATTACGGCTACGTGCTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..........................................................................................................................AAA---------------------------------------AGTGGTCGAAGTTCCTCTCCTT....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------GTG---GGCATAGTTCGAGCGAAGA..................	26	1	1.00	1	0	1	0	0	0
..............................................................G---ATTACGGCTACGTGCTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................GTCGGCGGAGAGTTCACC......................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................C------------TGCCTCTTCC---TCGTCGGC..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCGAGCGAAGAGGC...............	19	1	1.00	1	0	0	1	0	0
.............................................................................................GAAATACGG---C------G------AGTAAA---------------------------------------AGTGGTC...................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GGCATAGTTCGAGCGAAGAG.................	21	1	1.00	1	0	0	1	0	0
.....................................................................................CACTAAACGAAATACGG---C------G------AGTAAA---------------------------------------AGT.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GGTCGACGGCGG---AGGCCACGTCAA..........................................................................................................................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................A------GTG---GGCATAGTTCGAGCGAA....................	21	1	1.00	1	0	0	1	0	0
............GTC-------------------------------------------TACGG---ATTACGGCTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................GATTTGGGTCGACGGCGG---AGGCCACGT.............................................................................................................................	27	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGTTCGAGCGAAGAGGC...............	22	1	1.00	1	0	0	0	1	0
..........................................................................................AACGAAATACGG---C------G------AGTAAA---------------------------------------A.........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------GTG---GGCATAGTTCGAGCGAAGAGGC...............	28	1	1.00	1	0	0	1	0	0
.........ATCGTC-------------------------------------------TACGG---ATTACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.........................................................................................AAACGAAATACGG---C------G------AGT....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CA------------GAGTC------------------------------------ACAGCA------GTG---GGC..................................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................CGTCGGCGGAGAGTTCACCC.....................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................CTTC------------TGCCTCTTCC---TCGTCGGCGGA...............................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
..................................................................................GGCCACTAAACGAAATACGG---C------G------A......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.........................................................................................AAACGAAATACGG---C------G------AGTAAA---------------------------------------..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
........CATCGTC-------------------------------------------TACGG---ATTACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................G------------------------------------------------TGCCAT---TAGTTT---ACCCAAC....................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GTCGACGGCGG---AGGCCACGTCAAAGACG.....................................................................................................................	28	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................GTCAAAGACGCAACTGTCA------------GAGT............................................................................................	23	1	1.00	1	0	0	1	0	0
.CT----CCATCGTC-------------------------------------------TACGG---AACG........................................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	1	0

droVir3

GAG--GTTCGTCGCCCA-------AA----T-------------TTCTAACGGAC-------A---ACAACAGCTACGGCCTGGCCAACAACAAGAGCAGCA---G---CAGC------AGCAGC---------------------------------------AGCAGCAGCAGCGCCTCCTCCTC------------CGCCTCCTCCACCACATCCGCCGAGTGCTCGCCCGTGCTG-TCACGAATCAGCACAGCGACAGCCTTA-----------------------GCCGG---CAGCGT---GCCCAACGAGCTGCAGCAGCTGGGCAGACGGAGG---CGAACACGTCGCCAGCA--GCA-GCAGAGGAATTGCCAGAGCA------------------------------------GCGA---------GGACGGGCACAGCTCTAGCGAGGA------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................GACAGCCTTA-----------------------GCCGG---CAGCGT---...........................................................................................................................................................................	21	1	3.00	3	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AGAGGAATTGCCAGAGCA------------------------------------GC.....................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....GTTCGTCGCCCA-------AA----T-------------TTCTAACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TAACGGAC-------A---ACAACAGCTACGG...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CGCCAGCA--GCA-GCAGAGGAATTGCC.................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CTAACGGAC-------A---ACAACAGCTACGGCCTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AA----T-------------TTCTAACGGAC-------A---ACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AGAGGAATTGCCAGAGCA------------------------------------GCGA---------..........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ACGGAC-------A---ACAACAGCTACGGCCTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GCA--GCA-GCAGAGGAATTGCCAGAGC............................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GAACACGTCGCCAGCA--GCA-GC.............................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................A-GCAGAGGAATTGCCAGAGCA------------------------------------GCGA---------G.........................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGCACAGCGACAGCCTTA-----------------------GCC.........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGTCGCCCA-------AA----T-------------TTCTAACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGGAC-------A---ACAACAGCTACGGCCTGGCCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------GCGA---------GGACGGGCACAGCTCTAGCGAG....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTCGCCAGCA--GCA-GCAGAGGAAT.....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCA-GCAGAGGAATTGCCAGAGC............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GTGCTG-TCACGAATCAGCACA...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AGAGCA------------------------------------GCGA---------GGACGGGCACAGCTCT..........................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CA-------AA----T-------------TTCTAACGGAC-------A---ACAACAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CGAGTGCTCGCCCGTGCTG-..............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................ATCAGCACAGCGACAGCCTTA-----------------------GCCGG---C...................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................ATTGCCAGAGCA------------------------------------GCGA---------GGACGGGC..................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------GGACGGGCACAGCTCTAGCGAG....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------GCGA---------GGACGGGCACAGCTCTAGCGA.....................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTA-----------------------GCCGG---CAGCGT---GCCCAACGAGCT...............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAGACGGAGG---CGAACACGTCGC..........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCA-GCAGAGGAATTGCCAGA..............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................GCAGAGGAATTGCCAGAGCA------------------------------------.......................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................A--GCA-GCAGAGGAATTGCCAGAGCA------------------------------------GCG....................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GGCCAACAACAAGAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GGGCAGACGGAGG---CGAACACGTCGC..........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................CAGAGGAATTGCCAGAGC............................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTA-----------------------GCCGG---CAGCGT---GCCCAACGAGCTG..............................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCA-GCAGAGGAATTGCCAGAGCA------------------------------------GCGA---------..........................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AACGGAC-------A---ACAACAGCTACGGCCTGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AGGAATTGCCAGAGCA------------------------------------GCGA---------GGACGG....................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAGACGGAGG---CGAACACGTCGCCAGCA--...................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AACGGAC-------A---ACAACAGCTACGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CCACCACATCCGCCGAGTGCT..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ACAGCGACAGCCTTA-----------------------GCCGG---CAGC................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................A--GCA-GCAGAGGAATTGCCAGA..............................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGCACAGCGACAGCCTTA-----------------------GCCGG---CAGCG...............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GACGGAGG---CGAACACGTCGCCAGC......................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................A-------AA----T-------------TTCTAACGGAC-------A---ACAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ACAACAAGAGCAGCA---G---CAGC------AGCA...................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ACAACAAGAGCAGCA---G---CAGC------.......................................................................................................................................................................................................................................................................................................................................................................	20	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACAAGAGCAGCA---G---CAGC------AGC....................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CAACAAGAGCAGCA---G---CAGC------AGC....................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CAGC------AGCAGC---------------------------------------AGCAGCAGCA................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCAGC---------------------------------------AGCAGCAGCAGCGCC...........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AACAACAAGAGCAGCA---G---C................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CAACAACAAGAGCAGCA---G---C................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

GAG--GTTCGTCGCCCA-------AA----T-------------TTCCAACGGAC-------A---ACAACAGCTACGTGCTGGCCAACAACAAGAGCAACA---A---CAGC------AGC---------------------------------------------AGCAGCAGCACCACCACCAGCGGCTCCTCCTCTTCCTC------------TTCATCCTCCTCGCCAGTGTTG-GTGCGT------------ACAGCTTCA-----------------------GGCGG---CAGCGT---GCCCAACGAGCTGCAGCAGCTGGGCAGACGTCGA---CGCGCTCGTCGCC--------------AGCAACAGCCACAACA------------------------------------GCAGCA------GCA---GC-----------AAAGGAATT---------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................AGCTTCA-----------------------GGCGG---CAGCGT---GC.........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................CTACGTGCTGGCCAACAACAAGAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............................................TTCCAACGGAC-------A---ACAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................TG-GTGCGT------------ACAGCTTCA-----------------------GGCGG---C...................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GCTTCA-----------------------GGCGG---CAGCGT---GCCCA......................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
.........................................................................CTACGTGCTGGCCAACAACAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................T------------ACAGCTTCA-----------------------GGCGG---CAGCGT---GCC........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................TCATCCTCCTCGCCAGTGTTG-GT............................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................AACGGAC-------A---ACAACAGCTACGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................................................................................GGCCAACAACAAGAGCAACA---A---CAG..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................CTC------------TTCATCCTCCTCGCCAGTGTTG-..............................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................CAACGGAC-------A---ACAACAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................CAACGAGCTGCAGCAGCTGGGCAGAC..............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GAGCTGCAGCAGCTGGGCA.................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CGTCGA---CGCGCTCGTCGCC--------------AGC........................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................GCTGGGCAGACGTCGA---CGCGCTCGT.............................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................CGTGCTGGCCAACAACAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AGCCACAACA------------------------------------GCAGCA------GCA---GC-----------AAAGGA..................	27	1	1.00	1	1	0	0	0	0	0
....................................................GAC-------A---ACAACAGCTACGTGCTGGCCAACA....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................GTTG-GTGCGT------------ACAGCTTCA-----------------------GG..........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................TGCGT------------ACAGCTTCA-----------------------GGCGG---C...................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................GTGCGT------------ACAGCTTCA-----------------------GGCGG---C...................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................AGCACCACCACCAGCGGCT..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CTCGTCGCC--------------AGCAACAGCCA................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------GCA---GC-----------AAAGGAATT---------------	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................GT---GCCCAACGAGCTGCAGC..........................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCGA---CGCGCTCGTCGCC--------------AGCAACA....................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GAGCTGCAGCAGCTGGGC..................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
.....................................................................................................A---A---CAGC------AGC---------------------------------------------AGCAGCAGCACCACC........................................................................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
........................................................................................CAACAAGAGCAACA---A---CAGC------AGC---------------------------------------------.......................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------GCAGCA------GCA---GC-----------AAAGGAA.................	19	5	0.20	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................AACAGCCACAACA------------------------------------GCAGCA------GC.........................................	21	6	0.17	1	1	0	0	0	0	0
.....................................................................................CAACAACAAGAGCAACA---A---CAG..............................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	1
...............................................................................................................GC------AGC---------------------------------------------AGCAGCAGCACCACC........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................CAGC------AGC---------------------------------------------AGCAGCAGCAC............................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................CCACAACA------------------------------------GCAGCA------GCA---GC-----------A.......................	20	20	0.05	1	0	0	0	0	0	1

droGri2

GCGAGGTTCGTCGCCCA-------AC----T-------------TGCTAACGGA----CAACA---ACAACAGCTACGTGCTGGCTACCAACAACAACGCCA---A---CAAC------AACAACCACAACGACGACGACGGGAGCAGCAACAGCAATAGT---AGCAGCAGCAGTAGCTCCTC---------------------------------------------GCCAGTGT---------------------------TTAGTCGAGAGGGAGCCGGAGGCTCATCCAC---ATCGGT---GCCCAACGAGCTGCAGCAGCTGGGCAGACGACGG---CGCACACAGCAGCAACAGCGTCGTCAGCAGCGTCGCCACGAGACGGGTTCGGGTGCGGGTGCGGGTGCTGGTGGTGGTGGTG---------GCGGTGGGCACAGTTCTAGCGAGGATCT---------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................ACCACAACGACGACGACGGGAGCAGC.........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGTGGTGGTG---------GCGGT......................................	19	20	0.05	1	1	0

dsi_26239

2l:21406955-21407104 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.8	-20.3	-20.2