ID:

dsi_2623

 Coordinate:

3l:8208617-8208677 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.5 -6.4 -5.8 -5.7

Flybase annnotation

exon [3l_8208134_8208616_-]; CDS [3l_8208134_8208616_-]; CDS [3l_8208678_8210132_-]; exon [3l_8208678_8210132_-]; intron [3l_8208617_8208677_-]

No Repeatable elements found

mature
  1. 2r:869547-869561 -
  2. dsi_2623  3l:8208626-8208640 -
  3. node_17437:4817-4831 -
star

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
TTGGCTCTTGGTTCCACCATGTGGCAGTTCATCGAAGCTGGATTGTTTGAGTAAGACCTATTCCAATTCTGCTTGGGATCTCCTAATAAAAGATGTTATATTTTATTTCAGCGAAGCCTACCAGGTCGCATGCCTGGGCGTGACCACCAGCGACTGGGAGG
**************************************************.......((........(((..(((((....)))))....)))................))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body
............TCCACCCTGTGGCAGTTCATCGAAGCT.......................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0
.............................CATCGAAGCTGGATTGTTTGA............................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................ATTCTGCTTGGGAACACC.............................................................................. 18 2 2 0.50 1 0 1 0 0 0 0 0
............................................................................................................................................GGACCACCAGCCACTGGGA.. 19 2 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................AAAAGATGTTATATT........................................................... 15 0 3 0.33 1 0 1 0 0 0 0 0
...................................AGCTGGATTGTTTGAC.............................................................................................................. 16 1 4 0.25 1 0 0 0 0 1 0 0
...................................................................................................................................GCCTGGGCGGGAACACCA............ 18 2 5 0.20 1 0 1 0 0 0 0 0
...................................AGGTGGACTGTTTGAGT............................................................................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0
................................................................AACTCTGCTTGGGAACACC.............................................................................. 19 3 12 0.08 1 0 1 0 0 0 0 0
..................................AAGCTGGGTTGTTTGAGGC............................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 1 0
......................................CGGATGGATTGAGTAAGA......................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AACCGAGAACCAAGGTGGTACACCGTCAAGTAGCTTCGACCTAACAAACTCATTCTGGATAAGGTTAAGACGAACCCTAGAGGATTATTTTCTACAATATAAAATAAAGTCGCTTCGGATGGTCCAGCGTACGGACCCGCACTGGTGGTCGCTGACCCTCC
**************************************************.......((........(((..(((((....)))))....)))................))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...............TGGTACACCGTCAAGTAGCTT............................................................................................................................. 21 0 1 1.00 1 0 1
.........................TCGAGTAGTTTCGACCTGACAA.................................................................................................................. 22 3 1 1.00 1 1 0
.........................TCGAGTAGCTTCGACC........................................................................................................................ 16 1 8 0.13 1 1 0
.........................TCGAGTAGCTTCGAC......................................................................................................................... 15 1 20 0.05 1 1 0

Generated: 04/24/2015 at 10:48 AM