ID:

dsi_26214

 Coordinate:

4:1010368-1010517 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.1 -7.7 -7.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Hoyak2DNAhAT-Ac+
DNAREP1_DMRCHelitron-

Sense Strand Reads

TTGGCAAAACAACTGATTTAATCCAAAACAACAGAGAATGCTATAGTCGAGTTCCCCGACCATCAAATAACCCGTTATTTTAATAAAAGCCGCGTTTAAAGCAAATATTCTAAAGTATAACAGAATATGATGCCGGCATGGATCTCAGTGTTATAGAAGTTACTTGTGTAGTAAATATTGTCTTCCCCATTTAACCAACCAAAACTGTCAAACTCACGCATTGTAATTAAGGATTAATTTATTAAATATA
***********************************************************************************************************************....................(((...((((((........(((((.....)))))))))))...))).*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR1275483
Male prepupae
.......................................................................................................................ACAGAATATGATGCCGGCATG.............................................................................................................. 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................AACTGTCAAACTCACGCATTGTAAT....................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................TAACAGAATATGATGCCGGCATGGA............................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................TCCACAACAACACAGAATG.................................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTACTTGTGTAGTAAATATTGTCTTCCC............................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................AAAGCCGCGTTTAAAGCAAAT................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................ATAACAGAATATGATGCCGGG................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................ATAATATGATGCCGGCATG.............................................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................TATTTTAATAAAAGCCGCGTTTAAAG..................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTTGTGTAGTAAATATTGTCT................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................AACAGAGAATGCTATAGTCGAGT...................................................................................................................................................................................................... 23 0 6 0.83 5 2 2 0 0 1 0 0 0 0 0
.............................AACAGAGAATGCTATAGTCGAGTTC.................................................................................................................................................................................................... 25 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGGAGTGAATATTGTCTTGCC............................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.............................AACAGAGAATGCTATAGTCGAGTT..................................................................................................................................................................................................... 24 0 6 0.50 3 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTGTAAGTAAGGATTA.............. 16 1 5 0.40 2 1 1 0 0 0 0 0 0 0 0
............................................................................................................................AGATGATGCCGGCTTGGA............................................................................................................ 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.............................AACAGAGAATGCTATTGTCGAGTTC.................................................................................................................................................................................................... 25 1 7 0.29 2 0 0 0 0 1 0 0 0 1 0
..........................AACAACAGAGAATGCTATAGTCGAGT...................................................................................................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.............................AACAGAGAATGCTATAGTCGAGTTCC................................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
......................................TGCTATAGTCGAGTTCCCCG................................................................................................................................................................................................ 20 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.............................AACAGAGAATGCTATTGTCGAGTTCC................................................................................................................................................................................................... 26 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0
.............................AACAGAGAATGCTATTGTCGAGTTCCC.................................................................................................................................................................................................. 27 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0
............................CAACAGAGAATGCTATAGTCG......................................................................................................................................................................................................... 21 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0
..............................ACAGAGAATGCTATAGTCGAG....................................................................................................................................................................................................... 21 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................GATATAGTAGTTACTTGTGA................................................................................. 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0
.............................AACAGAGAATGCTATTGTCGAGT...................................................................................................................................................................................................... 23 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0
..............................ACAGAGAATGCTATAGT........................................................................................................................................................................................................... 17 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GCCGGAATGAATCTCAG...................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0
.................................GAGAATGCTATAGTCGAGTTC.................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......................................TGCTATAGTCGAGTTCCCC................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACCGTTTTGTTGACTAAATTAGGTTTTGTTGTCTCTTACGATATCAGCTCAAGGGGCTGGTAGTTTATTGGGCAATAAAATTATTTTCGGCGCAAATTTCGTTTATAAGATTTCATATTGTCTTATACTACGGCCGTACCTAGAGTCACAATATCTTCAATGAACACATCATTTATAACAGAAGGGGTAAATTGGTTGGTTTTGACAGTTTGAGTGCGTAACATTAATTCCTAATTAAATAATTTATAT
***************************************************************....................(((...((((((........(((((.....)))))))))))...))).*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 M023
head
 M024
male body		 SRR902009
testis
 GSM343915
embryo
.............................TTGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 26 0 5 7.00 35 1 24 10 0 0 0 0 0 0 0 0 0
.............................TTGTCTCTTACGATATCAGCTCAA..................................................................................................................................................................................................... 24 0 6 3.67 22 1 5 9 0 7 0 0 0 0 0 0 0
..............................TGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 25 0 7 3.14 22 6 1 8 2 1 1 2 1 0 0 0 0
.............................TTGTCTCTTACGATAACAGCTCAAGG................................................................................................................................................................................................... 26 1 7 2.71 19 17 0 0 0 0 2 0 0 0 0 0 0
.............................TTGTCTCTTACGATATCAGCTCAAG.................................................................................................................................................................................................... 25 0 5 1.20 6 0 4 1 0 0 0 1 0 0 0 0 0
...............................................GCTCGAGGGGCTGGTAGTT........................................................................................................................................................................................ 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TCACAATATCTTCAATGAACA................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................TATCAGCTCAAGGGGCTGGTAGTTT....................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGGTTGGTTTTGACAGTTTGA.................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................GCTCAAGGGGCTGGTAGTTTA...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AGCTCGAGGGGCTGGTAGTTT....................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................TGTCTCTTACGATATCAGCTCAA..................................................................................................................................................................................................... 23 0 9 0.78 7 0 0 4 0 2 1 0 0 0 0 0 0
.............................TTGTCTCTTACGATAACAGCTCAA..................................................................................................................................................................................................... 24 1 11 0.73 8 5 0 0 0 1 2 0 0 0 0 0 0
..............................TGTCTCTTACGATAACAGCTCAAGG................................................................................................................................................................................................... 25 1 9 0.56 5 5 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AAACTATTTACGGCGCAAAT........................................................................................................................................................ 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................GTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 24 0 7 0.43 3 0 0 0 1 0 0 1 1 0 0 0 0
........................................................................................CGCCGCAAATGTCGTTTA................................................................................................................................................ 18 2 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................AAATTATTTTCGGCTCA........................................................................................................................................................... 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................TATCAGCTCAAGGGGCTGGTAGT......................................................................................................................................................................................... 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................GCTCAAGGGGCTGGTAGT......................................................................................................................................................................................... 18 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................TTGTCTCTTACGATATCAGCTCA...................................................................................................................................................................................................... 23 0 6 0.33 2 0 1 0 1 0 0 0 0 0 0 0 0
...........................TGTTGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 28 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................CGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 25 1 13 0.31 4 0 3 0 0 0 0 0 1 0 0 0 0
.............................TTGTCTCTTACGATAACAGCTCA...................................................................................................................................................................................................... 23 1 11 0.27 3 1 0 0 0 0 2 0 0 0 0 0 0
...................................CTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 20 0 20 0.25 5 0 0 0 0 0 0 0 5 0 0 0 0
...................................CTTACGATATCAGCTCAAGGGGCTGGT............................................................................................................................................................................................ 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................CTCTTACGATATCAGCTCAAGGGGC................................................................................................................................................................................................ 25 0 20 0.25 5 4 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................AGAGTCACAATATCG............................................................................................. 15 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................GTACAACAGAGGGGGTAAATT........................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1
..............CTAAATTAGGTTTTG............................................................................................................................................................................................................................. 15 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................TGTCTCTTACGATATCAG.......................................................................................................................................................................................................... 18 0 13 0.23 3 0 0 0 3 0 0 0 0 0 0 0 0
...............................GTCTCTTACGATAACAGCTCAAGG................................................................................................................................................................................................... 24 1 9 0.22 2 1 0 0 0 0 1 0 0 0 0 0 0
...............................GTCTCTTACGATATCAGCTCAA..................................................................................................................................................................................................... 22 0 9 0.22 2 0 0 2 0 0 0 0 0 0 0 0 0
.............................TAGTCTCTTACGATATGAGCTCAAGG................................................................................................................................................................................................... 26 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................CTCTTACGATATCAGCTCAAGGGGCT............................................................................................................................................................................................... 26 0 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0 0
.............................TTGTCTCTTACGATAACAGCTCAAGGG.................................................................................................................................................................................................. 27 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................GGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 25 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................TGTCTCTTACGATATCAGCTCAAGGG.................................................................................................................................................................................................. 26 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................GGTAAATTTGTTGGTTTTTA............................................ 20 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................TTGTCTCTTACGATAACAGCTCAAG.................................................................................................................................................................................................... 25 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................TGTTGTCTCTTACGATATCAG.......................................................................................................................................................................................................... 21 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
............................GTTGTCTCTTACGATATCAGCT........................................................................................................................................................................................................ 22 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................GTGTCTTACGATATCAGCTCAAGGGGC................................................................................................................................................................................................ 27 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................TTGTTGTCTCTTACGATAT............................................................................................................................................................................................................. 19 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................AGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 25 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................GTCTCTTACGATATCAGCTCAAG.................................................................................................................................................................................................... 23 0 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................CTTACGATATCAGCTCAAGGGGCCGGT............................................................................................................................................................................................ 27 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................GGCTGGTATTTTATTTGG................................................................................................................................................................................. 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................TGTCTCTTACGATATCAGCTCA...................................................................................................................................................................................................... 22 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................TTGTCTCTTACGTTATCAGCTCAA..................................................................................................................................................................................................... 24 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................TTACGATATCAGCTCA...................................................................................................................................................................................................... 16 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
.................................CTCTTACGATATCAGCTCAAGGGGCTG.............................................................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
............................CTTGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 27 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................TAGTCTCTTACGATATCAGCTCAAGT................................................................................................................................................................................................... 26 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................ATCTGCTCAAGAGGCAGGT............................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
.............................TTGTCTCTTACGATATC............................................................................................................................................................................................................ 17 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................TGTCTCTTACGATATCAGCTCAATG................................................................................................................................................................................................... 25 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................TATCAGCTCGAGGGGCTGGTAGT......................................................................................................................................................................................... 23 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................TGTCTCTTATGATAACAGCTCAAGG................................................................................................................................................................................................... 25 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................TTGTCTCTTACGATAT............................................................................................................................................................................................................. 16 0 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................GCCGCAAATGTCGTTTA................................................................................................................................................ 17 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................TGTCTCTTACGATATCAGC......................................................................................................................................................................................................... 19 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................TTGTCTCTTACGACATCAGCTCAAGG................................................................................................................................................................................................... 26 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................TGTCTCTTACGATATCAGCT........................................................................................................................................................................................................ 20 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................TCAAGAGGCAGGTAGTT........................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................TGTCTCTTACGATAACAGCTCAA..................................................................................................................................................................................................... 23 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................TTGTCTCTTACGATAACAGCTCAATG................................................................................................................................................................................................... 26 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................ATGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 26 1 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................TTTTGTCTCTTACGATAACAGCTCAAGG................................................................................................................................................................................................... 28 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................TTACGATATCAGCTCAAGGGGCT............................................................................................................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......TTTGGTGACTAAATT..................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGAATGGGTAAATTG....................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AACAGAAGGGGGAAA.......................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAGAAGGGGTAAATT........................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................TGGTGTATCTTACAATATCAGCTCA...................................................................................................................................................................................................... 25 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................ATGGGGTCAATAGGTTGGT................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
................................TCTCTTACGATATCAGCTCAAGGG.................................................................................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................CGATATCAGCTCAAGGGGC................................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TCACGTCTCTTACGATATCAGCTCAAGG................................................................................................................................................................................................... 28 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:1010318-1010567 + dsi_26214 TTGGCAAAACAACTGATT------TAATCCAAAACAA----------CAGAGAATGCTATAGTCGAG-TTCCCCGACCATCAAATAACCCGTTATTTT------------AATAAAAGCCGCGTTTA-AAGCAAATATTCTAAAGTATAACAGAATAT---------------------------------GATGCCGGCATGGATCTCAGTGTTATAGAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGTAAATATTGTCTTCCCCAT-------TTAACCAACCAAAACTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCACGCATTGT----------------------------------------AATTAAGGATTAATT----------TATTA-AATA-------TA
droSec2 scaffold_40:276268-276525 + TTGGCAAAACAACTGATT------TAATCCAAAACAA----------CAGAGAATGCTATAGTCGAG-TTCCCCGACCATCAAATAACCCGTTATTT----TAGCATTTTAATAAAAGCCGCGTTTA-AAGCAAATATTCTAAAGTATAACAGAATAT---------------------------------GATGCCGGCATGGATCTCAGTGTTATAGAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGTAAATATTGTCTTCCCCAT-------TCAACCAACCAAAACTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCACGCATTGT----------------------------------------AATTAAGGATTAATT----------TATTA-AATA-------TA
dm3 chr4:1252701-1253067 + TGGGCAAAGCAACTGATT------TAATTCAAAACAA----------CAGAGAATGCTAAGGTCGAC-TTCCCCGACTATCAAATACCCTGTTATTT----TAGCATTTTAATAAAAGCCGAGCTTG-AAGCAAATACCCTAAAGTATA-----------------------ACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--TATGATGCCGACATGTATCTCAGTTTTATACCGCTTACTTGAGTAGTAAATATTGTCTTCCCTATTCTACCAACCAAATACTCTAAAGT-----ATAACAGAATATGATGCCGACATGGATCTCAGTTTTATACCGCT--TACTTGAGTAGTAAATATTGCCTTCCCTAT-------TCTACCAACCAAAACTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCACGTATTTC----------------------------------------AATTAAGGATTTATCATTAGATACCCTTTATATTA-------TA
droEre2 scaffold_4512:51972-52206 + ACTTACA---------------------CCAAAACAA----------GAGAGAATGCTATAGTCGAG-TTCTCCGACT-TCAAATA-CCCGTTACTAGGCGAG-AAATTTCATAATTTTCTGGAATATCGGTAAAAATTGCAAAAAAGAACAATATAG---------------------------------AATGCTATAGTCGA---------------------CTTCCCCGA-----------CTATCAGATACCCGTTACTCAGCTAGTGAAAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACGAGAAATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTTTTTTTAT----------------------------------------AATGG--TAGAAATT----------GGTGAAAAAA-------TA
droYak3 4:1242341-1242593 - TGAATAAAATGAAA------------ATAAATAACAA----------GAGAGAACGCTATAGTCGAG-TTCCTCGACTATCTGATA-CCCGTTAT-CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGTGAAAGTGCGAAGGAGAAATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----CTCTCACCGTTTTTGGCG-GTTTGTGGGCGTTAGACTGGGCGT--------GGCAAAAAGATTTTTG-GCAAATCAAGGGAAATTT---------------ACTAGACTAACAAAAATGTAAAAAAAAATCTCA--AGACA-------------------------------------------------------------------------------------------------------------TTTTAATACCCGTTACTCGT--AGAGTAAAAG---------------------------------------GGTA-------TA
droEug1 scf7180000407820:53948-54167 - TGGGCGATACAAGG--TTAAACTCCAATTTAAAACAA----------GAGTTAACGCTATAGTCGAG-TGCCGCGACTATAAGATA-CCTGTTTT------AGACAATTTTAAA----------------ATATTCATT-------------------TTGC--------TAGTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTTCAAGGCGCTACCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTAGTGAAAGTACGTTGAGTAACTGATAATGACGTCACTGCCC------ATGTG--AG-------------GCCTTAT----------------------------------------TACCTAAAAAATCTT----------TGGTA-AATC-------GA
droBia1 scf7180000302402:2367337-2367562 + TTAATAGGGTGACTGATT------TGAAG-AACGAGG----------CGGAAAGTGTCATAATCGTA-GTTGAGGACAAT-------------------------------------------CTTA-AAAAAAATATT-------------------AGCC--------TAGTAGATGATAATGTAAAAA--------------------------------------------------------------------------------------------------------AGCTG-CTGGACCA-ATGCAA------------------------------------------------CGAATACAAATTGGTACACAGTA-------------------------CTTGATTATTT---------------------------------------------------------------------------------------------------------------------------------GTTGAGGAAA--------ATTTAAT-------TTGACCCATGAAGACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTCATGCATTAT----------------------------------------AATTAAGAATAAATT----------TGTGG-AAT----------
droTak1 scf7180000414263:1628-1867 - TGGC-AAAGCGATTGCTTGAACACT--TTTAAAGCAA----------GAGAAAACGCTATAGTCGGG-TGCCCCGACTATCAGATA-CCCGTTACTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAAAGGGAGTGCAAGGG---------AGATG-AAGA---------------------------------------------------TATAATAATAAATAATAATTAATATATATTAATTTAAGCTTTA--TAAA--TTTACCT-CGATGGATGCT-ATGTTTTTG---------------------------------------------AATTCGTTACAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC------AAGTT--AA-------------ACTGCGT----------------------------------------ATTCCAT---AAACC----------ACTGA-GATA-------TA
droEle1 scf7180000490678:25822-26081 + TTGGGAAGAAGAAAATTT------TAATCAAAAACAA----------GAAAAAACGCTTTAATCGAG-ATTCCCGACATTAAGATA-CCCATAACTCAGCCAAAAAACTTTAAA----------------CTAGGTATT-------------------TCCCCTACAAAATAATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTCAGGTGGCGCCATCTGTCGAAATTC-AT-----------------------------------------AGGCAACATTATTTAAAGTCGTTAATATCAAGATCTGATGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATCGTTTTAACATAAAATCA-GACTTTAAAGTTACGTACCAT----------------------------------------AAGAAAGAATTA-------------T-----ATTA-------AA
droRho1 scf7180000774379:4668-4872 + AA------------------------------AACAA----------GAGAAAACGCTATAGTCGAG-TGCCTCGACTA---GATA-CCCGTTACTCAGCTAAACAACTTAATATAAA-------------TATGC-------------------------------------------------------AAT--TGCAACTGTGTACAATGTAAATACAGTGACAAACTTAATTATTGGCACAGCAA-----------------------------------------------------------------------------------------------------------------------------------------G-------------------------CATGTTAAACT----------------------------------------------------------------------------------------------------------------------------------TTGAGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATACCCGTTACTCGT--AGAGTAAAAGGGTATA-----------------------------TTG-TATTCGTGCAAAA
droFic1 scf7180000454065:2329567-2329637 - TATTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC-------TGATTAAAAAAACTTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATAAACTTGCT----------------------------------------AGATAAAAATTAAAA----------TATTA-AAAA-------AA
droKik1 scf7180000302405:304824-305009 + CACACTTGAAATAA-ATT------TAACTTAATACAA----------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGATGGTAATACATTTTTAAAGAAATTT---------------ATTTATGT--------------------------------TGTACATATATGTATGTATTT--TACTACAGATGTTCTAACTTTAATTAATTACCCAGAATCATTTGTAT------ACCCTTGCA--GGG-----------------------------------------------------TATTATAATTTTCA-------------------TCA-TGAA-------TT
droAna3 scaffold_13230:406026-406156 - ACAAATT---------------------TTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AC-GGCATCGTTCATAGTATTGAAGGTA--------------------------------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTGCATAATAAGTTTTACCTTATCGAT-------TGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ATTTTTAT------ACCCTTGCAGAGGG-----------------------------------------------------TATTATAATTTTGGTCAAAAG----------TGTGC-AACG-------CA
droBip1 scf7180000393328:2052-2288 - AACAAAC-------AATT-----TT--TATAAATTTG----------CAGAGGGTATTATAATCAAC-AGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCGCACCG-ACACATCAATTAAAAGTTTTAAATT----------------------------------------------AAAATAACTAAAACTTTAACTAAA--TATGGTTTCATTAGTTGTT-AAATTTAAT---------------------------------------------AATATTTTATAGATTTTTTGAAATTACAA------------------------------------------------------------TTTTTTT-------GTAA-CAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ATGTTGAT------ACCCTTACAGAGGG-----------------------------------------------------TATTATAATTTTGTACAAACG----------TGTGC-AACG-------CA
dp5 XL_group3a:2217267-2217446 + ACAAAAG---------------------------------------------------------------------------------------------------------------TCGCATTTG-AATTAAATT------------------------------------------------------AAT--TATCAAAGAATTTCGGGTCATGGAAATGGACTCCTTCTTTAGTAGAGTAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTTTTCCCCAT-------AGATT------------------------------------------------------------------------AATATTACCCCCAAAACATTTTTCACTACATA-------------------------------------------------------------------------------------------------------------TCGTTATACTTGATACTCAAAAAGAGTATAGGGGTATA-----------------------------TTA-GATT-------TG
droPer2 scaffold_3:953252-953376 + ATAGGTA---------------------TTGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAACAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----TTGTCGTTAATTTTGACCTGCCGGTAGATATTCGAGGCAACGCAGACTGCG--------------------------------------------AGACATATTT------------------------------------------------------------------------------------------------------GCAT-------------------------------CGCATCGG----------------------------------------ACGTACCGGACGATT----------T--GG-TATG-------TC
droWil2 scf2_1100000004909:749545-749689 - TGTTTTGATAAATTGAGT------T-----------------------------------------------------------------------------------------------GCAGGGA-AAACA---ATTTCAAAATGTAA--AAATAT---------------------------------GAT--TGTCAAGGACTGCAAGGGTATATAAGTTAGCTTCTTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------------------TTTTTATACCATACACCCAT--AGGGTGAAATGGTATA-----------------------------TTA-AAGTCG--CCAAA
droVir3 scaffold_13042:1327451-1327703 + TTGGTTAAGCTATGGA------------AAATGAAATAATTCTTCTTAAAGAAATGCTACAGCTTAG-CT--------AA--------------------------------GAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCG-CCGGTTCAAATCC---AATTATTATTTTTAAATTTATGTTAATTCACAAAGTGCACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------AAATAGACGATTGCCG-GCACTTTTATTGGCAATTAGTAATAAAAGTATTATTTAA----------------------------------AGCATATGTCTG-ATGCCTTT--TAGTCT----------------------------CA---CTTTTTAA------ACTCTTGCAGAAGT-----------------------------------------------------TATTAACATTTTG-------T----------CATGA-AATG-------TG
droMoj3 scaffold_6540:883796-884008 + AATAGGA-------------------------AACAA----------ATAAGAAAGCTGTAGTCGAGACTGCCCGACTACGAGATCCCCTGAACCCT----CCGCACATGCACACACA-------------CAGGC----------ATA--CGCACGT---------------------------------GTTGGCTGCAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCTTACTATGGAAACTT---------------AATTGTTT--------------------------------AATAAAAATTTTTGTTTATACCCTGAA------------------------------CC---CATTTTCA------ACGGTAAACCAGGG-----------------------------------------------------TATAATAGTTTTGTTTTAAT---------------G-TATG-------TA
droGri2 scaffold_15203:9694554-9694583 - AGCAAAA--CAAAAGATT------TGTTTCA-AACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGGCAAAACAACTGATT------TAATCCAAAACAA----------CAGAGAATGCTATAGTCGAG-TTCCCCGACCATCAAATAACCCGTTATTTT------------AATAAAAGCCGCGTTTA-AAGCAAATATTCTAAAGTATAACAGAATAT---------------------------------GATGCCGGCATGGATCTCAGTGTTATAGAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGTAAATATTGTCTTCCCCAT-------TTAACCAACCAAAACTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCACGCATTGT----------------------------------------AATTAAGGATTAATT----------TATTA-AATA-------TASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................ACAGAATAT---------------------------------GATGCCGGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00211000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCACGCATTGT----------------------------------------AAT.........................................2512.00200000002000000000
...................................................................................................................................................TAACAGAATAT---------------------------------GATGCCGGCATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
....................................................................................................................................................................................................................................................................TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGTAAATATTGTCTTCCC........................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..................................................................................................................AAAGCCGCGTTTA-AAGCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
..................................................................................................................................................ATAACAGAATAT---------------------------------GATGCCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
............................................................................................TATTTT------------AATAAAAGCCGCGTTTA-AAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.......................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGTAAATATTGTCT............................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...................................AA----------CAGAGAATGCTATAGTCGAG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.83500000012002000000
...................................AA----------CAGAGAATGCTATAGTCGAG-TTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.60300000000003000000
...................................AA----------CAGAGAATGCTATAGTCGAG-TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.50300000000003000000
................................AACAA----------CAGAGAATGCTATAGTCGAG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000001000000000
...................................AA----------CAGAGAATGCTATAGTCGAG-TTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.20100000000001000000
......................................................TGCTATAGTCGAG-TTCCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.15300000000003000000
..................................CAA----------CAGAGAATGCTATAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.14100000010000000000
....................................A----------CAGAGAATGCTATAGTCGAG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11101000000000000000
....................................A----------CAGAGAATGCTATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17130.08100000000001000000
.................................................GAGAATGCTATAGTCGAG-TTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000000001
......................................................TGCTATAGTCGAG-TTCCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
TTGGCAAAACAACTGATT------TAATCCAAAACAA----------CAGAGAATGCTATAGTCGAG-TTCCCCGACCATCAAATAACCCGTTATTT----TAGCATTTTAATAAAAGCCGCGTTTA-AAGCAAATATTCTAAAGTATAACAGAATAT---------------------------------GATGCCGGCATGGATCTCAGTGTTATAGAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGTAAATATTGTCTTCCCCAT-------TCAACCAACCAAAACTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCACGCATTGT----------------------------------------AATTAAGGATTAATT----------TATTA-AATA-------TASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................ATAGAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGT.......................................................................................................................................................................................................................................................................................................................................2011.0010001
.........................................................................................................................................................................................................TGGATCTCAGTGTTATAGAAG--------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
........................................................................................................................................................................................................................TAGAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----GTGTAGTAA.....................................................................................................................................................................................................................................................................................................................................2111.0010100
.....................................................ATGCTATAGTCGAG-TTCCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001
dm3
TGGGCAAAGCAACTGATT------TAATTCAAAACAA----------CAGAGAATGCTAAGGTCGAC-TTCCCCGACTATCAAATACCCTGTTATTT----TAGCATTTTAATAAAAGCCGAGCTTG-AAGCAAATACCCTAAAGTATA-----------------------ACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--TATGATGCCGACATGTATCTCAGTTTTATACCGCTTACTTGAGTAGTAAATATTGTCTTCCCTATTCTACCAACCAAATACTCTAAAGT-----ATAACAGAATATGATGCCGACATGGATCTCAGTTTTATACCGCT--TACTTGAGTAGTAAATATTGCCTTCCCTAT-------TCTACCAACCAAAACTGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCACGTATTTC----------------------------------------AATTAAGGATTTATCATTAGATACCCTTTATATTA-------TASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGTTTTATACCGCTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCTCAGTTTTATACCGC......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................AACAA----------CAGAGAATGCTAAGGTCGAC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATACCGCT--TACTTGAGT..........................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................CAGAGAATGCTAAGGTCGAC-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...................................................GAATGCTAAGGTCGAC-TTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGTTTTATACCGCT--TA.................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGAATATGATGCCGACATGGAT......................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAA----------CAGAGAATGCTAAGGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATACCGCTTACTTGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................GAGAATGCTAAGGTCGAC-TTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGCTTACTTGAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCGCT--TACTTGAGTAG........................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGCT--TACTTGAGTA.........................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GAATGCTAAGGTCGAC-TTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCGCTTACTTGAGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................TTCAAAACAA----------CAGAGAATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTCCCCGACTATCAAATACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.2920000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTCCCCGACTATCAAATACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................TTCCCCGACTATCAAATAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CCCGACTATCAAATACCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
ACTTACA---------------------CCAAAACAA----------GAGAGAATGCTATAGTCGAG-TTCTCCGACT-TCAAATA-CCCGTTACTAGGCGAG-AAATTTCATAATTTTCTGGAATATCGGTAAAAATTGCAAAAAAGAACAATATAG---------------------------------AATGCTATAGTCGA---------------------CTTCCCCGA-----------CTATCAGATACCCGTTACTCAGCTAGTGAAAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACGAGAAATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTTTTTTTAT----------------------------------------AATGG--TAGAAATT----------GGTGAAAAAA-------TASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................AGTGAAAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACGAGAA................................................................................................................................................................................................................................................................................................2050.2010000010
....................................................................................................................................................................................................................................................................TTACTCAGCTAGTGAAAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................21200.1530000030
.......................................................................................................................................................................................................................................................................................G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAACGAGAAATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA................................................................................................19200.0510000010
droYak3
TGAATAAAATGAAA------------ATAAATAACAA----------GAGAGAACGCTATAGTCGAG-TTCCTCGACTATCTGATA-CCCGTTAT-CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGTGAAAGTGCGAAGGAGAAATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----CTCTCACCGTTTTTGGCG-GTTTGTGGGCGTTAGACTGGGCGT--------GGCAAAAAGATTTTTG-GCAAATCAAGGGAAATTT---------------ACTAGACTAACAAAAATGTAAAAAAAAATCTCA--AGACA-------------------------------------------------------------------------------------------------------------TTTTAATACCCGTTACTCGT--AGAGTAAAAG---------------------------------------GGTA-------TASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCA--AGACA-------------------------------------------------------------------------------------------------------------TTTTAATACCCGT.......................................................................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCGTTAGACTGGGCGT--------GG.........................................................................................................................................................................................................................................................................................23190.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTAGACTGGGCGT--------GG.........................................................................................................................................................................................................................................................................................18200.05101000000000
.......................................................................CTCGACTATCTGATA-CCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05110000000000
............................................................................................................................................................................................................................................................................CTAGTGAAAGTGCGAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
droEug1
TGGGCGATACAAGG--TTAAACTCCAATTTAAAACAA----------GAGTTAACGCTATAGTCGAG-TGCCGCGACTATAAGATA-CCTGTTTT------AGACAATTTTAAA----------------ATATTCATT-------------------TTGC--------TAGTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTTCAAGGCGCTACCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTAGTGAAAGTACGTTGAGTAACTGATAATGACGTCACTGCCC------ATGTG--AG-------------GCCTTAT----------------------------------------TACCTAAAAAATCTT----------TGGTA-AATC-------GASizeHit CountTotal NormTotal
No Reads
droBia1
TTAATAGGGTGACTGATT------TGAAG-AACGAGG----------CGGAAAGTGTCATAATCGTA-GTTGAGGACAAT-------------------------------------------CTTA-AAAAAAATATT-------------------AGCC--------TAGTAGATGATAATGTAAAAA--------------------------------------------------------------------------------------------------------AGCTG-CTGGACCA-ATGCAA------------------------------------------------CGAATACAAATTGGTACACAGTA-------------------------CTTGATTATTT---------------------------------------------------------------------------------------------------------------------------------GTTGAGGAAA--------ATTTAAT-------TTGACCCATGAAGACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTCATGCATTAT----------------------------------------AATTAAGAATAAATT----------TGTGG-AAT----------SizeHit CountTotal NormTotal
No Reads
droTak1
TGGC-AAAGCGATTGCTTGAACACT--TTTAAAGCAA----------GAGAAAACGCTATAGTCGGG-TGCCCCGACTATCAGATA-CCCGTTACTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAAAGGGAGTGCAAGGG---------AGATG-AAGA---------------------------------------------------TATAATAATAAATAATAATTAATATATATTAATTTAAGCTTTA--TAAA--TTTACCT-CGATGGATGCT-ATGTTTTTG---------------------------------------------AATTCGTTACAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC------AAGTT--AA-------------ACTGCGT----------------------------------------ATTCCAT---AAACC----------ACTGA-GATA-------TASizeHit CountTotal NormTotal
No Reads
droEle1
TTGGGAAGAAGAAAATTT------TAATCAAAAACAA----------GAAAAAACGCTTTAATCGAG-ATTCCCGACATTAAGATA-CCCATAACTCAGCCAAAAAACTTTAAA----------------CTAGGTATT-------------------TCCCCTACAAAATAATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTCAGGTGGCGCCATCTGTCGAAATTC-AT-----------------------------------------AGGCAACATTATTTAAAGTCGTTAATATCAAGATCTGATGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATCGTTTTAACATAAAATCA-GACTTTAAAGTTACGTACCAT----------------------------------------AAGAAAGAATTA-------------T-----ATTA-------AASizeHit CountTotal NormTotal
No Reads
droRho1
AA------------------------------AACAA----------GAGAAAACGCTATAGTCGAG-TGCCTCGACTA---GATA-CCCGTTACTCAGCTAAACAACTTAATATAAA-------------TATGC-------------------------------------------------------AAT--TGCAACTGTGTACAATGTAAATACAGTGACAAACTTAATTATTGGCACAGCAA-----------------------------------------------------------------------------------------------------------------------------------------G-------------------------CATGTTAAACT----------------------------------------------------------------------------------------------------------------------------------TTGAGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATACCCGTTACTCGT--AGAGTAAAAGGGTATA-----------------------------TTG-TATTCGTGCAAAASizeHit CountTotal NormTotal
No Reads
droFic1
TATTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC-------TGATTAAAAAAACTTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATAAACTTGCT----------------------------------------AGATAAAAATTAAAA----------TATTA-AAAA-------AASizeHit CountTotal NormTotal
No Reads
droKik1
CACACTTGAAATAA-ATT------TAACTTAATACAA----------AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAATATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGATGGTAATACATTTTTAAAGAAATTT---------------ATTTATGT--------------------------------TGTACATATATGTATGTATTT--TACTACAGATGTTCTAACTTTAATTAATTACCCAGAATCATTTGTAT------ACCCTTGCA--GGG-----------------------------------------------------TATTATAATTTTCA-------------------TCA-TGAA-------TTSizeHit CountTotal NormTotal
No Reads
droAna3
ACAAATT---------------------TTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AC-GGCATCGTTCATAGTATTGAAGGTA--------------------------------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTGCATAATAAGTTTTACCTTATCGAT-------TGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ATTTTTAT------ACCCTTGCAGAGGG-----------------------------------------------------TATTATAATTTTGGTCAAAAG----------TGTGC-AACG-------CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................GTTCATAGTATTGAAGGTA--------------------------------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTGC............................................................................................................................................................................................................................................................................................................................................2840.251100000
.....................................................................................................................................................................................................................................................................C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTGCATAATAAGTTTTACCTT...........................................................................................................................................................................................................................................................................................................................25160.061100000
droBip1
AACAAAC-------AATT-----TT--TATAAATTTG----------CAGAGGGTATTATAATCAAC-AGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCGCACCG-ACACATCAATTAAAAGTTTTAAATT----------------------------------------------AAAATAACTAAAACTTTAACTAAA--TATGGTTTCATTAGTTGTT-AAATTTAAT---------------------------------------------AATATTTTATAGATTTTTTGAAATTACAA------------------------------------------------------------TTTTTTT-------GTAA-CAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CA---ATGTTGAT------ACCCTTACAGAGGG-----------------------------------------------------TATTATAATTTTGTACAAACG----------TGTGC-AACG-------CASizeHit CountTotal NormTotal
No Reads
dp5
ACAAAAG---------------------------------------------------------------------------------------------------------------TCGCATTTG-AATTAAATT------------------------------------------------------AAT--TATCAAAGAATTTCGGGTCATGGAAATGGACTCCTTCTTTAGTAGAGTAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGTTTTCCCCAT-------AGATT------------------------------------------------------------------------AATATTACCCCCAAAACATTTTTCACTACATA-------------------------------------------------------------------------------------------------------------TCGTTATACTTGATACTCAAAAAGAGTATAGGGGTATA-----------------------------TTA-GATT-------TGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTCAAAAAGAGTATAGGG...................................................22120.1720200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAGGGGTATA-----------------------------TTA-GATT-------T.21200.0510100000000
droPer2
ATAGGTA---------------------TTGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAACAAG--------------------------------------TTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----TTGTCGTTAATTTTGACCTGCCGGTAGATATTCGAGGCAACGCAGACTGCG--------------------------------------------AGACATATTT------------------------------------------------------------------------------------------------------GCAT-------------------------------CGCATCGG----------------------------------------ACGTACCGGACGATT----------T--GG-TATG-------TCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTT------------------------------------------------------------------------------------------------------GCAT-------------------------------CGCATCGG----------------------------------------ACGTACC.....................................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGG----------------------------------------ACGTACCGGACGA...............................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------------------------------------------------------------------------------------GCAT-------------------------------CGCATCGG----------------------------------------ACGTACC.....................................2111.001001000
droWil2
TGTTTTGATAAATTGAGT------T-----------------------------------------------------------------------------------------------GCAGGGA-AAACA---ATTTCAAAATGTAA--AAATAT---------------------------------GAT--TGTCAAGGACTGCAAGGGTATATAAGTTAGCTTCTTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------------------TTTTTATACCATACACCCAT--AGGGTGAAATGGTATA-----------------------------TTA-AAGTCG--CCAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................TGCAAGGGTATATAAGTTAGCTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCATACACCCAT--AGGG..........................................................20200.10202000
......GATAAATTGAGT------T-----------------------------------------------------------------------------------------------GCAGGGA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.07100100
droVir3
TTGGTTAAGCTATGGA------------AAATGAAATAATTCTTCTTAAAGAAATGCTACAGCTTAG-CT--------AA--------------------------------GAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCG-CCGGTTCAAATCC---AATTATTATTTTTAAATTTATGTTAATTCACAAAGTGCACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------AAATAGACGATTGCCG-GCACTTTTATTGGCAATTAGTAATAAAAGTATTATTTAA----------------------------------AGCATATGTCTG-ATGCCTTT--TAGTCT----------------------------CA---CTTTTTAA------ACTCTTGCAGAAGT-----------------------------------------------------TATTAACATTTTG-------T----------CATGA-AATG-------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AATAGGA-------------------------AACAA----------ATAAGAAAGCTGTAGTCGAGACTGCCCGACTACGAGATCCCCTGAACCCT----CCGCACATGCACACACA-------------CAGGC----------ATA--CGCACGT---------------------------------GTTGGCTGCAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCTTACTATGGAAACTT---------------AATTGTTT--------------------------------AATAAAAATTTTTGTTTATACCCTGAA------------------------------CC---CATTTTCA------ACGGTAAACCAGGG-----------------------------------------------------TATAATAGTTTTGTTTTAAT---------------G-TATG-------TASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................TCGAGACTGCCCGACTACGAGATCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.357200050
.........................................................TGTAGTCGAGACTGCCCGACTACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153200010
.........................................................................CGACTACGAGATCCCCTGAACCCT----C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.111000010
..............................................................TCGAGACTGCCCGACTACGAGATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000020
..............................................................TCGAGACTGCCCGACTACGAGATCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTGAA------------------------------CC---CATTTTCA------ACC..................................................................................................................22170.061000010
...................................................................ACTGCCCGACTACGAGATCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.................................................................AGACTGCCCGACTACGAGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
........................................................................CCGACTACGAGATCCCCTGAACCCT----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..................................................................GACTGCCCGACTACGAGATCCCCTGAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000010
.........................................................TGTAGTCGAGACTGCCCGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
...............................................................CGAGACTGCCCGACTACGAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
................................................................GAGACTGCCCGACTACGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
................................................TAAGAAAGCTGTAGTCGAGACTGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
droGri2
AGCAAAA--CAAAAGATT------TGTTTCA-AACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:08 PM