ID:

dsi_26209

 Coordinate:

3l:19115868-19115918 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.3 -6.2 -6.0

Flybase annnotation

Antisense to CDS [3l_19115860_19115871_+]; Antisense to intron [3l_19115787_19115841_+]; Antisense to intron [3l_19115787_19115841_+]; Antisense to intron [3l_19115787_19115841_+]; Antisense to intron [3l_19115787_19115841_+]; Antisense to intron [3l_19115872_19115895_+]; Antisense to intron [3l_19115787_19115841_+]; Antisense to five_prime_UTR [3l_19115835_19115859_+]; Antisense to exon [3l_19115835_19115871_+]; Antisense to exon [3l_19115895_19116228_+]; Antisense to CDS [3l_19115895_19116228_+]; Antisense to CDS [3l_19115842_19116162_+]; Antisense to CDS [3l_19115842_19118908_+]; Antisense to exon [3l_19115842_19118981_+]; Antisense to exon [3l_19115842_19116162_+]; Antisense to exon [3l_19115842_19116150_+]; Antisense to CDS [3l_19115842_19116150_+]; Antisense to exon [3l_19115842_19118926_+]; Antisense to exon [3l_19115842_19116075_+]; Antisense to CDS [3l_19115842_19116075_+]; Antisense to CDS [3l_19115842_19118908_+]

No Repeatable elements found

mature
  1. 3l:19115293-19115311 +
  2. dsi_26209  3l:19115868-19115886 -
  3. 3l:19115919-19115937 -
star

Sense Strand Reads

CAGTGTATGCCAGGGGAGCACCCAGGAGTCCAGGCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAANAACACCCAGGAGTCCAGGCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAACGACGACGGCCTGTGAATAAAATGCGATTAGTAA
**************************************************(((.......((((........((.((...)).)))))).......)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................AGAGCGAGAACGACGACGGCT....................... 21 1 2 25.50 51 51 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGTT....................... 21 2 2 22.00 44 44 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGTA....................... 21 2 2 21.50 43 43 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTT...................... 22 1 2 18.50 37 37 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCT...................... 22 0 2 18.00 36 35 0 1 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGT........................ 20 1 2 14.00 28 28 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGC........................ 20 0 2 13.50 27 27 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGTTT...................... 22 2 2 11.50 23 23 0 0 0 0 0 0
................AGCACCCAGGAGTCCAGGCTT.................................................................................................................. 21 0 2 11.50 23 23 0 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGACGG......................... 21 0 2 11.50 23 23 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTA...................... 22 2 2 9.50 19 19 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGG......................... 19 0 2 8.50 17 17 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCC....................... 21 0 2 7.50 15 15 0 0 0 0 0 0
..GTGTATGCCAGGGGAGCACCC................................................................................................................................ 21 0 2 6.00 12 0 12 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCTG..................... 23 0 2 5.00 10 10 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGA........................ 20 1 2 4.50 9 9 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCTT..................... 23 1 2 4.00 8 7 0 1 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGACG.......................... 21 0 2 4.00 8 8 0 0 0 0 0 0
.................GCACCCAGGAGTCCAGGC.................................................................................................................... 18 0 2 3.00 6 0 6 0 0 0 0 0
.....TATGCCAGGGGAGCACCCA............................................................................................................................... 19 0 2 3.00 6 0 6 0 0 0 0 0
..........CAGGGGAGCACCCAGGAG........................................................................................................................... 18 0 2 3.00 6 0 6 0 0 0 0 0
.........CCAGGGGAGCACCCAGGAGT.......................................................................................................................... 20 0 2 3.00 6 0 6 0 0 0 0 0
.........CCAGGGGAGCACCCAGGAGTCC........................................................................................................................ 22 0 2 3.00 6 0 6 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGTTA...................... 22 3 2 3.00 6 6 0 0 0 0 0 0
.............................................................................................................AGCGAGAACGACGACGGCCTG..................... 21 0 2 3.00 6 6 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACG.......................... 18 0 2 3.00 6 0 6 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGACGGT........................ 22 1 2 2.50 5 5 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGAT....................... 21 2 2 2.50 5 5 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGTAT...................... 22 2 2 2.50 5 5 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCTA..................... 23 1 2 2.50 5 5 0 0 0 0 0 0
......................................................................................................CGACGAGAGCGAGAACGACGTA........................... 22 2 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................GACGAGAGCGAGAACGACGAC........................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGATT...................... 22 2 2 2.00 4 4 0 0 0 0 0 0
.............................................................................................................AGCGAGAACGACGACGGCCTTTT................... 23 2 2 2.00 4 4 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCAA...................... 22 2 2 2.00 4 4 0 0 0 0 0 0
.............................................................................................................AGCGAGAACGACGACGGCCTGT.................... 22 0 2 2.00 4 4 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCA....................... 21 1 2 2.00 4 4 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTC...................... 22 2 2 2.00 4 4 0 0 0 0 0 0
..................................................................................AGGCTTGGCAGCAGCGCAG.................................................. 19 0 3 1.67 5 0 5 0 0 0 0 0
...............................AGGCTTGGCAGCAGCGCAG..................................................................................................... 19 0 3 1.67 5 0 5 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGTTT...................... 21 2 2 1.50 3 3 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCA...................... 22 1 2 1.50 3 3 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTTT..................... 23 2 2 1.50 3 3 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGCTT...................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.............................................................................................................AGCGAGAACGACGACGGCCTTT.................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGA............................ 19 0 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGAC........................... 20 0 2 1.50 3 3 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTTA..................... 23 2 2 1.50 3 3 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGTTTT..................... 23 3 4 1.50 6 6 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGTT........................ 20 2 3 1.33 4 4 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTAT..................... 23 3 3 1.33 4 4 0 0 0 0 0 0
........................................................................CCAGGAGTCCAGGCTTGGCAG.......................................................... 21 0 3 1.00 3 3 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTAA..................... 23 3 2 1.00 2 2 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACTA......................... 19 2 2 1.00 2 2 0 0 0 0 0 0
...................................................................................................AGGCGACGAGAGCGAAAACGACG............................. 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTTTT.................... 24 2 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................CGACGAGAGCGAGAACGACGT............................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGAC........................... 19 0 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGACGG......................... 22 0 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................CGACGAGAGCGAAAACGACGAA........................... 22 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................CGACGAGAGCGAGAACGACGAA........................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................GGCGACGAGAGCGAGAACGTA.............................. 21 2 1 1.00 1 1 0 0 0 0 0 0
.....................CCAGGAGTCCAGGCTTGGCAG............................................................................................................. 21 0 3 1.00 3 3 0 0 0 0 0 0
.................GCACCCAGGAGTCCAGGCTTG................................................................................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCTTT.................... 24 1 2 1.00 2 2 0 0 0 0 0 0
...............................................................................................................CGAGAACGACGACGGCCTTTT................... 21 2 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................................AGCGAGAACGACGACGGCCTGTT................... 23 1 2 1.00 2 2 0 0 0 0 0 0
..........................................................................................................GAGAGCGAGAACGACGACGGC........................ 21 0 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................................AGCGAGAACGACGACGGCCTGA.................... 22 1 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGACGT......................... 22 1 2 1.00 2 2 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGTTT....................... 21 3 6 0.83 5 5 0 0 0 0 0 0
.................................................................................................................AGAACGACGACGGCCTGTGAAA................ 22 1 2 0.50 1 1 0 0 0 0 0 0
.................GCACCCAGGAGTCCAGGCTTTT................................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0
.................GCACCCAGGAGTCCAGGCTTGTA............................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTG...................... 22 2 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................GCGAGAACGACGACGGCC....................... 18 0 2 0.50 1 0 0 0 0 1 0 0
.............................................................................................................AGCGAGAACGACGACGGCCTT..................... 21 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAAGGACGACGGCCTA..................... 23 2 2 0.50 1 1 0 0 0 0 0 0
...........................................AGCGCAGGCGACGAGAGCGAA....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................GCGAGAACGACGACGGCCTTTA................... 22 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGACGGTT....................... 23 2 2 0.50 1 1 0 0 0 0 0 0
............AGGGAGCACCCAGGAGTCCAGTT.................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGAA....................... 20 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGACGGTAT...................... 24 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGTA....................... 20 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGT........................ 19 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCTTA.................... 24 2 2 0.50 1 1 0 0 0 0 0 0
.............................................................................AGTCCGGGCTTGGCAGCGGCG..................................................... 21 2 4 0.50 2 2 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGACGTT........................ 23 2 2 0.50 1 1 0 0 0 0 0 0
............AGGGAGCACCCAGGAGTCCAGGT.................................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
................AGCACCCAGGAGTCCAGGTTT.................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................AGCGCAGGCGACGAGAGCGAA.................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................GAGAGCGAGAACGACGACGG......................... 20 0 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCATA..................... 23 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGAA....................... 21 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGC........................ 19 0 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGACGAA........................ 22 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGAA........................... 20 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCCTTTA................... 25 2 2 0.50 1 1 0 0 0 0 0 0
................AGCACCCAGGAGTCCAGGCTTT................................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGAAGACGGC........................ 20 1 2 0.50 1 1 0 0 0 0 0 0
..........................AGTCCGGGCTTGGCAGCGGCG........................................................................................................ 21 2 4 0.50 2 2 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGTT....................... 20 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGACGTAT....................... 24 3 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGCT....................... 20 1 2 0.50 1 1 0 0 0 0 0 0
................AGCACCCAGGAGTCCAGGTA................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGACGGCTT...................... 24 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGGGCGAGAACGACGACGGTTT...................... 22 3 2 0.50 1 1 0 0 0 0 0 0
.................GCACCCAGGAGTCCAGGCTTT................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................AGCGAGAACGACGACGGTTT...................... 20 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGCTTTTA................... 25 3 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGCTA...................... 21 2 2 0.50 1 1 0 0 0 0 0 0
.....................................................................CACCCAGGAGTCCAGGCTTG.............................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0
......................CAGGAGTCCAGGCTTGGCAGA............................................................................................................ 21 1 3 0.33 1 1 0 0 0 0 0 0
............................TCCAGGCTTGGCAGCAGCA........................................................................................................ 19 1 3 0.33 1 0 1 0 0 0 0 0
......................CAGGAGTCCAGGCTTGGCAGCT........................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................GAGCGAGAACGACGACGGCTAT..................... 22 3 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGTAA...................... 22 3 3 0.33 1 1 0 0 0 0 0 0
..........................AGTCCAGGCTTGGCAGCAGCGT....................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGAT........................... 20 1 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGTTTT...................... 22 3 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................ATAGCGAGAACGACGACGGCT....................... 21 2 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGGATTT..................... 23 3 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGAATT...................... 22 3 3 0.33 1 1 0 0 0 0 0 0
.....................CCAGGAGTCCAGGCTTGGCAT............................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................AGAGCGAGAACGACGACGT......................... 19 1 3 0.33 1 1 0 0 0 0 0 0
......................CAGGAGTCCAGGCTTGGCAGC............................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0
......................CAGGAGTCCAGGCTTGGCATT............................................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0 0
..................CACCCAGGAGTCCAGGCTTG................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................................CAGGAGTCCAGGCTTGGCAGCT........................................................ 22 1 3 0.33 1 1 0 0 0 0 0 0
.........................................................................CAGGAGTCCGGGCTTGGCAT.......................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0
.............................................................................AGTCCAGGCTTGGCAGCAGCGT.................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
......................CGGGAGTCCAGGCTTGGCAGT............................................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................................CAGGAGTCCAGGCTTGGCAGA......................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
.........................................................................CGGGAGTCCAGGCTTGGCAGT......................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
........................................................................CCAGGAGTCCAGGCTTGGCAT.......................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................ACGAGAGCGAGAACGACGATT.......................... 21 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................................CAGGAGTCCAGGCTTGGCATT......................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................................CAGGAGTCCAGGCTTGGCAGC......................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................TCCAGGCTTGGCAGCAGCA..................................................... 19 1 3 0.33 1 0 1 0 0 0 0 0
......................CAGGAGTCCGGGCTTGGCAT............................................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0
......................CAGGAGTCCAGGCTTGGCATTT........................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0
....................CCCAGGAGTCCAGGCTTGGTT.............................................................................................................. 21 2 4 0.25 1 1 0 0 0 0 0 0
.........................................................................CAGGAGTCCAGGCTTGGCATTT........................................................ 22 3 4 0.25 1 1 0 0 0 0 0 0
........................................................................CCAGGAGTCCAGGCTTGT............................................................. 18 1 4 0.25 1 1 0 0 0 0 0 0
......................................................................ACCCAGGAGTCCAGGCTTG.............................................................. 19 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................CCCAGGAGTCCAGGCTTGGTT........................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
.....................CCAGGAGTCCAGGCTTGT................................................................................................................ 18 1 4 0.25 1 1 0 0 0 0 0 0
...................ACCCAGGAGTCCAGGCTTG................................................................................................................. 19 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................CCCAGGAGTTCGGGCTTGGC............................................................ 20 2 4 0.25 1 0 0 0 1 0 0 0
....................CCCAGGAGTTCGGGCTTGGC............................................................................................................... 20 2 4 0.25 1 0 0 0 1 0 0 0
...........................................................................................................AGAGCGAGAACGACGACTT......................... 19 2 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................CGAGAGCGAGAACGACGAATA......................... 21 3 9 0.22 2 2 0 0 0 0 0 0
.......................................................................CCCAGGAGTCCAGGCTTTT............................................................. 19 2 5 0.20 1 1 0 0 0 0 0 0
......................CAGGAGTCCAGGCTTGGCTTT............................................................................................................ 21 3 5 0.20 1 1 0 0 0 0 0 0
.........................................................................CAGGAGTCCAGGCTTGGCTTT......................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0
....................CCCAGGAGTCCAGGCTTTT................................................................................................................ 19 2 5 0.20 1 1 0 0 0 0 0 0
....................CCCAGGAGTCCAGGCTTTTT............................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0
.......................................................................CCCAGGAGTCCAGGCTTTTT............................................................ 20 3 8 0.13 1 1 0 0 0 0 0 0
..............................................GCTGGCGACCATAGCGAGA...................................................................................... 19 3 20 0.10 2 0 0 0 2 0 0 0
.................................................................................................GCTGGCGACCATAGCGAGA................................... 19 3 20 0.10 2 0 0 0 2 0 0 0
...................................................................................................................................GAATATAATGCGATTAAT.. 18 2 12 0.08 1 0 0 0 0 0 1 0
...............................................................................................................CGTGAAGGACGACGGCC....................... 17 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

######################################################################################################################################-----------------
GTCACATACGGTCCCCTCGTGGGTCCTCAGGTCCGAACCGTCGTCGCGTCCGCTGCTCTCGCTCTTNTTGTGGGTCCTCAGGTCCGAACCGTCGTCGCGTCCGCTGCTCTCGCTCTTGCTGCTGCCGGACACTTATTTTACGCTAATCATT
**************************************************(((.......((((........((.((...)).)))))).......)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
.....................................................................................................CGCTGCTCTCGCTCTTGCTGCT............................ 22 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.......................................................................................................CTGCTCTCGCTCTTGCTG.............................. 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
............CCCCTCGTGGGTCCTCAGGTC...................................................................................................................... 21 0 2 3.50 7 6 0 1 0 0 0 0 0 0 0
..CACATACGGTCCCCTCGTGGGT............................................................................................................................... 22 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
..................................................................................................GTCCGCTGCTCTCGCTTTTG................................. 20 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0
.................CGTGGGTCCTCAGGTCCGAA.................................................................................................................. 20 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
..........................................................................................................CTCTCGCTCTTGCTGCTGCC......................... 20 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
..CACATACGGTCCCCTCGTGG................................................................................................................................. 20 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
.................................................................................................CGTCCGCTGCTCTCGCTCTTG................................. 21 0 1 3.00 3 0 2 0 0 0 0 1 0 0 0
.........................................................................................................GCTCTCGCTCTTGCTGCT............................ 18 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
...............................................................................................CGCGTCCGCTGCTCTCGCTCTTGC................................ 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
............................................................................................................CTCGCTCTTGCTGCTGCCGGAC..................... 22 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
..........................................................................................................CTCTCGCTCTTGCTGCTGC.......................... 19 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
..................................................................................................GTCCGCTGCTCTCGCTCTTGC................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................TGTCCGCTGCTCTCGCTCTTG................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................GTCCGCTGCTCTCGCTTTTGC................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.....................................................................GTGGGTCCTCAGGTCCGAAC.............................................................. 20 0 3 2.00 6 6 0 0 0 0 0 0 0 0 0
..................GTGGGTCCTCAGGTCCGAAC................................................................................................................. 20 0 3 2.00 6 6 0 0 0 0 0 0 0 0 0
.................................................................................................TGTCCGCTGCTCTCGCTTTTGC................................ 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................GTCCGCTGCTCTCGCTCTTG................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..............................GTCCGAACCGTCGTCGCGTCC.................................................................................................... 21 0 3 1.67 5 5 0 0 0 0 0 0 0 0 0
.................................................................................GTCCGAACCGTCGTCGCGTCC................................................. 21 0 3 1.67 5 5 0 0 0 0 0 0 0 0 0
..............................GTCCGAACCGTCGTCGCGT...................................................................................................... 19 0 3 1.67 5 5 0 0 0 0 0 0 0 0 0
.................................................................................GTCCGAACCGTCGTCGCGT................................................... 19 0 3 1.67 5 5 0 0 0 0 0 0 0 0 0
..............................................TGTCCGCTGCTCTCGCTCTT..................................................................................... 20 1 2 1.50 3 0 3 0 0 0 0 0 0 0 0
..........................................GTCGCGTCCGCTGCTCTCGCT........................................................................................ 21 0 2 1.50 3 0 3 0 0 0 0 0 0 0 0
.............................................................................................GTCGCGTCCGCTGCTCTCGCT..................................... 21 0 2 1.50 3 0 3 0 0 0 0 0 0 0 0
............................................................................................CGTCGCGTCCGCTGCTCT......................................... 18 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
.........................................CGTCGCGTCCGCTGCTCT............................................................................................ 18 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
..................................GAACCGTCGTCGCGTCCGC.................................................................................................. 19 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................TGTCCGCTGCTCTCGCTCTT.................................. 20 1 2 1.50 3 0 3 0 0 0 0 0 0 0 0
..................................GAACCGTCGTCGCGTCCGCT................................................................................................. 20 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
..............TTTCGTGGGTCCTCAGGTCC..................................................................................................................... 20 2 2 1.50 3 0 3 0 0 0 0 0 0 0 0
.....................................................................................GAACCGTCGTCGCGTCCGCT.............................................. 20 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................GAACCGTCGTCGCGTCCGC............................................... 19 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................TTGCGTCCGCTGCTCTCGCTTTTG................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................GTCCGCTGCTCTCGCTCCTG................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TGCCGGACACTTATTTTACGCT....... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................TTTGCGTCCGCTGCTCTCGCT........................................................................................ 21 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................TGTCCGCTGCTCTCGCTTTTG................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................CCGCTGCTCTCGCTTTTGCT............................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................TTCCGCTGCTCTCGCTCTTGCT............................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................TTTGCGTCCGCTGCTCTCGCT..................................... 21 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0
....................................................................TTTGGGTCCTCAGGTCCGAACC............................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................TGTCCGCTGCTCTCGCTTTTGCT............................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TTGCTGCTGCCGGACACTTA................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................CGTCCGCTGCTCTCGCTCTTGC................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................TTTCCGCTGCTCTCGCTTTTGC................................ 22 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0
....................................................................................CGAACCGTCGTCGCGTCCGCT.............................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................CGTCCGCTGCTCTCGCTC.................................... 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................TCGCGTCCGCTGCTCTCGCTT.................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................TTTGCTGCTCTCGCTCTTGCT............................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TGTCGCGTCCGCTGCTCTCGCT..................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..............................................CGTCCGCTGCTCTCGCTC....................................................................................... 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...........................................TCGCGTCCGCTGCTCTCGCTT....................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...............CTCGTGGGTCCTCAGGTCCGAA.................................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.........................................TGTCGCGTCCGCTGCTCTCGCT........................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................TTGCTGCTCTCGCTCTTGCTG.............................. 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................ATCGCGTCCGCTGCTCTCGCT..................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.............................................ATGTCCGCTGCTCTCGCTCTT..................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................CGCGTCCGCTGCTCTCGCTCTT..................................................................................... 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
................................................................................................ATGTCCGCTGCTCTCGCTCTT.................................. 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................................CGAACCGTCGTCGCGTCCGCT................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................ATCGCGTCCGCTGCTCTCGCT........................................................................................ 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................CGCGTCCGCTGCTCTCGCTCTT.................................. 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..........GTCCCCTCGTGGGTCCTCAGGCC...................................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..............................................AGTCCGATGCTCTCGCTCTT..................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................................................................TTTTTCCTCAGGTCCGAACCGTCGT........................................................ 25 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................TCCTCAGGTCCGAACCGTCGT........................................................ 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................TATGTCCTCAGGTCCGAACCGTC............................................................................................................. 23 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.......................TCCTCAGGTCCGAACCGTCGT........................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................TTTTTCCTCAGGTCCGAACCGTCGT........................................................................................................... 25 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.............................................TTGTCCGCTGCTCTCGCTCTT..................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................AGTCCGATGCTCTCGCTCTT.................................. 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................................................................TATGTCCTCAGGTCCGAACCGTC.......................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
................................................................................................TTGTCCGCTGCTCTCGCTCTT.................................. 21 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
............................................................................TTCAGGTCCGAACCGTCGTCG...................................................... 21 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.........................TTCAGGTCCGAACCGTCGTCG......................................................................................................... 21 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................TATGCGTCCGCTGCTCTCGCT..................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..........................................TATGCGTCCGCTGCTCTCGCT........................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
............TTTCTCGTGGGTCCTCAGGTCC..................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................TTTGCTGCCGGACACTTATTT............. 21 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.............TTTTCGTGGGTCCTCAGGTC...................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
...............CTCGTAGGTCCTCGGGTCTG.................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0
....................................................................................................TTGCTGCTCTCGCTTTTGCTG.............................. 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TTTGCTACTGCCGGACA.................... 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0
................TCGTGGGTCCTAAGGGC...................................................................................................................... 17 2 20 0.10 2 0 0 0 1 0 0 0 1 0 0
................TCGTGGGTCATCAGGTTCGT................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19115818-19115968 - dsi_26209 CAGTGTATGCC--------------------------------AG------GG-------------------------------GAGCACCCAGGAGTCCAG---GCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAANAA---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAACGACGACGG---CCTGT---GAATAA--------AA-----T-GC----GATTAGTAA
droSec2 scaffold_2175:4250-4349 - CAGTGTAT---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAACGACGACGG---CCTGT---GAATAA--------AA-----T-GC----GATTAGTAA
dm3 chr3L:19470831-19470975 + AGGGGTAGGCC--------------------------------AT------TA-------------------------------GTACAGCCAGAGGAGAGTA---------AGCCACGTAAGCAGTGTAGGCCAAAGGCG---CACCAA------------------------TCAGTCCAGGCTTGGCAGCAGAGCAGGAGACGATGGCCAAGACAAGGACGT---CCTGT---GAATAA--------AA-----T-AC----AATTAGTAT
droEre2 scaffold_4784:19267430-19267530 + CAGAGTAA---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCACAGGCAACGAGTGCGAGGACGACGACGG---CCTGT---GAATAA--------AT-----C--AGCTTGATTAGT--
droYak3 v2_chr3L_random_001:194-290 - CAGAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCACAGGCAACGAGTGCGAGGACGACGACGG---CCTGT---GAATAA--------AT-----G--A----GGTTGGT--
droEug1 scf7180000409471:2861-2977 - CGGTATAAGCC--------------------------------AG------CG-------------------------------------------------------------------GGGAAGTGTAGGCCAGAGGAG---CACCAA------------------------TGAGTCCTGGTTTGGCAGCTACGCAGGCAACAAGAGCGAGGACAACAACGG---CCTAT---GAATAA--------AT-----T--A----ATTCAATTA
droBia1 scf7180000302529:3947-4046 - CAGTGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGAGGGG---CGCCCA------------------------GGAGGCCGGGCTTGGCAGCAGCACAGGCAACGAGGGCGAGGATAACAACGG---CCTAA---GGAGGA--------AA-----A-AC----GTTTAGAAA
droTak1 scf7180000415566:8468-8567 + AAGTGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGAGGAG---CACCCA------------------------GAAGTCCTGGTTTGGCAGCAGCACAGGCAACGAGGGCGAGGACAACAACGG---CCTGT---GGATAA--------CA-----A-AC----ATTTATAAA
droEle1 scf7180000491249:6760436-6760537 + CAGTGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGAGGAG---CACCCA------------------------AAAGTCCTGGCTTGGCAGCAGCACAGGCAACGAGAGCGAGGACAACAACGG---CCTGT---GAACAA--------AA-----A--GGTTTGATTAGT-A
droRho1 scf7180000780100:7352-7470 + CGGTGTATGCC--------------------------------AG------GG-------------------------------------------------------------------GAGAGGAGTAGGCCAATGGAG---CACCCA------------------------GAAGTCCTGGCTTGGCAGCAGCACAGGCAACGATAGCGAGGACAACAACGG---CCTGC---GGATAA--------AA-----ACAT----ATTTAGAAA
droFic1 scf7180000453839:1663735-1663863 + CAGCAAATGG--------------------------AGTTCCCAG------AGGAGCTGC---------------------------------------------GA------------ATGGAGTT----CCCAGAGGAG---CAGCCAGTGGAGCAGGAGCGTGGAAGGGAAGCAGACCAGCCTGGGCGGAAGC-CA-----------CGCAAAGAGCAACGA---GCTGG---AAATAA--------A-----------------------
droKik1 scf7180000302711:8376-8522 + CGACTTTGGCA--------------------------------AG----------------------------------GACGGGCTCCTGAACGATAGTGG------T---GGCAGCAGGAGCACTGTAGACCAGAGGAGCGGCGGCCA------------------------GGTGACCGGGCTTGGCGGCGGCGACGGCCAGGAGAGCGGCGAG---AACGA---ACTGC---GGGTGG--------AG-----AAAG----GGTTA--TA
droAna3 scaffold_13337:18016055-18016171 - CTGCGTAAGCC--------------------------------AG------AG-------------------------------------------------------------------GAGCGGAGTAGGCCAGAGGAG---CTCCCA------------------------GTAGTCCTGGCTTGGCAGCAGCACAGGCAACGATGGCAAGGACAACAACGG---CCTGT---AAAGGA--------GA-----G--G----AATTTTTTA
droBip1 scf7180000396741:1196625-1196748 - CGGTGTAGGCC--------------------------------AG------AG-------------------------GAGCGGAGTAGGCCAG------------------------AGGCGCAGTGTAGGCTAGAGGAG---CTCCCA------------------------GAAGTCCTGGCTTGGCAGCGGCACAGGCGACAATAGCGAGGATGACAACAG---CCTGA---AGATGG--------AA----------------------
dp5 XR_group8:7544241-7544390 + CGGTGACAAC------------------------------------------------------------------AGGAGCTGGTGCAGCAACGACAGCGGCAGGA------------ATGGCGTTGTAGGCCAGAGGAG---CAGCAA------------------------GGAAGCCGGGCTTGGCAGAAGCGCAGGCCAGGATGGCGAGGATGACGGCAG---CCTGT---ATGTGG--------AAGAGAAA-GA----CGTTGCTCA
droPer2 scaffold_48:325266-325415 - CGGTGACAAC------------------------------------------------------------------AGGAGCTGGTGCAGCAACGACAGCGGCAGGA------------ATGGCGTTGTAGGCCAGAGGAG---CAGCAA------------------------GGAAGCCGGGCTTGGCAGAAGCGCAGGCCAGGATGGCGAGGATGACGGCAG---CCTGT---ATGTGG--------AAGAGAAA-GA----CGTTGCTCA
droWil2 scf2_1100000004511:2158620-2158766 + CCACATAGGCG--------------------------------GC----------------------ACTACC-------------T--------ACGACAGC---------------TGGAGCAGTGTAGGCCAGAGGAGCAGCAGCCA------------------------ATATTCCAGGCTTGGCAGCGGCGACAGCCACAACAGCGAAGAAGCAGACGGCGAACTAAGGGATGGAG--------GATAAGGA-TT----CGTTGGTGG
droVir3 scaffold_13049:13040676-13040853 - CAGCAGCGA------------------TACCATTGAAGTTCCTGGCCACCACTTGGCTGCTGGTGGCAGTTACCACAGGAGCGGGTGCAGCGATGATGGCAGCCGGA---------------------GCAGCCAGCGGTG---TGTGCA------------------------GTATTCCAGGCTTGGCGGCGACGCAAGCGAGCAGGGCGCAGAGGACGACAG---TCTGA---ACAGAA--------AA-----T-AT----GAT------
droMoj3 scaffold_6680:14334422-14334545 + CAGTTATGAC------------------------------------------------------------------AGGTGCAGGGGCAGCCAGGAGGGCGGCAGGA---------------------GCAGCGAGCGGTG---CGTGCA------------------------GCAATCCTGGTTTGCCGGCGGCGCAGGCAATCAGAGCGCAGAGGACAACGG---CCTGA---AGAAAG--------TG----------------------
droGri2 scaffold_14375:18957-19166 - CAGCGGCAATAACGGGTGCAGCTGCGATGCCATTGAACGTCCTGGCCACCACTTGGCTACTGGCAGCGGTAATCACAGGTGTAGGTGCTGCAAGGACGGCAGCTGGA---------------------GCAGCCAGCGGTG---CATGCA------------------------GCAATCCTGGCTTGCCGGCAACGCAGGCAACCAGAGCGCAGAGGACAACAG---CCTGT---GAAGGATTACACGGAA-----T-AC----AATGATTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGTGTATGCC--------------------------------AG------GG-------------------------------GAGCACCCAGGAGTCCAG---GCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAANAA---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAACGACGACGG---CCTGT---GAATAA--------AA-----T-GC----GATTAGTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CT............................................21225.5051000000000000051000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---TT............................................21222.0044000000000000044000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---TA............................................21221.5043000000000000043000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CCT...........................................22218.0036010000000000035000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---T.............................................20214.0028000000000000028000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---C.............................................20213.5027000000000000027000
.....................................................................................AGCACCCAGGAGTCCAG---GCTT.....................................................................................................................................................................21211.5023000000000000023000
............................................................................................................................................................................................................CGAGAGCGAGAACGACGACGG---..............................................21211.5023000000000000023000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CTA...........................................2229.5019000000000000019000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---..............................................1928.5017000000000000017000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CC............................................2127.5015000000000000015000
..GTGTATGCC--------------------------------AG------GG-------------------------------GAGCACCC......................................................................................................................................................................................2126.0012000012000000000000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CCTG..........................................2325.0010000000000000010000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---A.............................................2024.50900000000000009000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CCTT..........................................2324.00801000000000007000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGACG..................................................2124.00800000000000008000
......................................................................................GCACCCAGGAGTCCAG---GC.......................................................................................................................................................................1823.00600006000000000000
.....TATGCC--------------------------------AG------GG-------------------------------GAGCACCCA.....................................................................................................................................................................................1923.00600006000000000000
..........C--------------------------------AG------GG-------------------------------GAGCACCCAGGAG.................................................................................................................................................................................1823.00600006000000000000
.........CC--------------------------------AG------GG-------------------------------GAGCACCCAGGAGT................................................................................................................................................................................2023.00600006000000000000
.........CC--------------------------------AG------GG-------------------------------GAGCACCCAGGAGTCC..............................................................................................................................................................................2223.00600006000000000000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---TTA...........................................2223.00600000000000006000
................................................................................................................................................................................................................AGCGAGAACGACGACGG---CCTG..........................................2123.00600000000000006000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACG..................................................1823.00600006000000000000
............................................................................................................................................................................................................CGAGAGCGAGAACGACGACGG---T.............................................2222.50500000000000005000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---AT............................................2122.50500000000000005000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CCTA..........................................2322.50500000000000005000
.........................................................................................................................................................................................................CGACGAGAGCGAGAACGACGTA...................................................2212.00200000000000002000
..........................................................................................................................................................................................................GACGAGAGCGAGAACGACGAC...................................................2112.00200000000000002000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CAA...........................................2222.00400000000000004000
................................................................................................................................................................................................................AGCGAGAACGACGACGG---CCTGT---......................................2222.00400000000000004000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CA............................................2122.00400000000000004000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CTC...........................................2222.00400000000000004000
.....................................................................................................................................................................................AGGCTTGGCAGCAGCGCAG..........................................................................1931.67500005000000000000
....................................................................................................AG---GCTTGGCAGCAGCGCAG........................................................................................................................................................1931.67500005000000000000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CCA...........................................2221.50300000000000003000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGA....................................................1921.50300000000000003000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGAC...................................................2021.50300000000000003000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGT---T.............................................2031.33400000000000004000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CTAT..........................................2331.33400000000000004000
...................................................................................................................................................CCA------------------------GGAGTCCAGGCTTGGCAG..................................................................................2131.00300000000000003000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CTAA..........................................2321.00200000000000002000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACTA---..............................................1921.00200000000000002000
.........................................................................................................................................................................................................CGACGAGAGCGAGAACGACGT....................................................2111.00100000000000001000
............................................................................................................................................................................................................CGAGAGCGAGAACGACGAC...................................................1921.00200000000000002000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGACGG---..............................................2221.00200000000000002000
.........................................................................................................................................................................................................CGACGAGAGCGAGAACGACGAA...................................................2211.00100000000000001000
.......................................................................................................................................................................................................GGCGACGAGAGCGAGAACGTA......................................................2111.00100000000000001000
..........................................................................................CCAGGAGTCCAG---GCTTGGCAG................................................................................................................................................................2131.00300000000000003000
......................................................................................GCACCCAGGAGTCCAG---GCTTG....................................................................................................................................................................2121.00200000000000002000
................................................................................................................................................................................................................AGCGAGAACGACGACGG---CCTGT---T.....................................2321.00200000000000002000
.............................................................................................................................................................................................................GAGAGCGAGAACGACGACGG---C.............................................2121.00200000000000002000
................................................................................................................................................................................................................AGCGAGAACGACGACGG---CCTGA---......................................2221.00200000000000002000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGACGT---..............................................2221.00200000000000002000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGT---TT............................................2160.83500000000000005000
....................................................................................................................................................................................................................AGAACGACGACGG---CCTGT---GAAA..................................2220.50100000000000001000
......................................................................................GCACCCAGGAGTCCAG---GCTTTT...................................................................................................................................................................2220.50100000000000001000
......................................................................................GCACCCAGGAGTCCAG---GCTTGTA..................................................................................................................................................................2320.50100000000000001000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CTG...........................................2220.50100000000000001000
.................................................................................................................................................................................................................GCGAGAACGACGACGG---CC............................................1820.50100100000000000000
................................................................................................................................................................................................................AGCGAGAACGACGACGG---CCTT..........................................2120.50100000000000001000
...................................................................................................................AGCGCAGGCGACGAGAGCGAA..........................................................................................................................................2120.50100000000000001000
............................................................................................................................................................................................................CGAGAGCGAGAACGACGACGG---TT............................................2320.50100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---AA............................................2020.50100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---TA............................................2020.50100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---T.............................................1920.50100000000000001000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---CCTTA---......................................2420.50100000000000001000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGACGT---T.............................................2320.50100000000000001000
.................................................................................................................................................................................................AGCGCAGGCGACGAGAGCGAA............................................................2120.50100000000000001000
.............................................................................................................................................................................................................GAGAGCGAGAACGACGACGG---..............................................2020.50100000000000001000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---AA............................................2120.50100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---C.............................................1920.50100000000000001000
............................................................................................................................................................................................................CGAGAGCGAGAACGACGACGA---A.............................................2220.50100000000000001000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGAA...................................................2020.50100000000000001000
.....................................................................................AGCACCCAGGAGTCCAG---GCTTT....................................................................................................................................................................2220.50100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---TT............................................2020.50100000000000001000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGACGT---AT............................................2420.50100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---CT............................................2020.50100000000000001000
.....................................................................................AGCACCCAGGAGTCCAG---GTA......................................................................................................................................................................2020.50100000000000001000
......................................................................................GCACCCAGGAGTCCAG---GCTTT....................................................................................................................................................................2120.50100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---CTA...........................................2120.50100000000000001000
................................................................................................................................................CACCCA------------------------GGAGTCCAGGCTTG......................................................................................2030.33100000000000001000
...........................................................................................CAGGAGTCCAG---GCTTGGCAGA...............................................................................................................................................................2130.33100000000000001000
.................................................................................................TCCAG---GCTTGGCAGCAGCA...........................................................................................................................................................1930.33100001000000000000
...........................................................................................CAGGAGTCCAG---GCTTGGCAGCT..............................................................................................................................................................2230.33100000000000001000
...............................................................................................................................................................................................................GAGCGAGAACGACGACGG---CTAT..........................................2230.33100000000000001000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGG---TAA...........................................2230.33100000000000001000
...............................................................................................AGTCCAG---GCTTGGCAGCAGCGT..........................................................................................................................................................2230.33100000000000001000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGAT...................................................2030.33100000000000001000
..........................................................................................CCAGGAGTCCAG---GCTTGGCAT................................................................................................................................................................2130.33100000000000001000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACGT---..............................................1930.33100000000000001000
...........................................................................................CAGGAGTCCAG---GCTTGGCAGC...............................................................................................................................................................2130.33100000000000001000
...........................................................................................CAGGAGTCCAG---GCTTGGCATT...............................................................................................................................................................2130.33100000000000001000
.......................................................................................CACCCAGGAGTCCAG---GCTTG....................................................................................................................................................................2030.33100000000000001000
....................................................................................................................................................CA------------------------GGAGTCCAGGCTTGGCAGCT................................................................................2230.33100000000000001000
................................................................................................................................................................................AGTCCAGGCTTGGCAGCAGCGT............................................................................2230.33100000000000001000
....................................................................................................................................................CA------------------------GGAGTCCAGGCTTGGCAGA.................................................................................2130.33100000000000001000
...................................................................................................................................................CCA------------------------GGAGTCCAGGCTTGGCAT..................................................................................2130.33100000000000001000
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGATT..................................................2130.33100000000000001000
....................................................................................................................................................CA------------------------GGAGTCCAGGCTTGGCATT.................................................................................2130.33100000000000001000
....................................................................................................................................................CA------------------------GGAGTCCAGGCTTGGCAGC.................................................................................2130.33100000000000001000
..................................................................................................................................................................................TCCAGGCTTGGCAGCAGCA.............................................................................1930.33100001000000000000
...........................................................................................CAGGAGTCCAG---GCTTGGCATTT..............................................................................................................................................................2240.25100000000000001000
.........................................................................................CCCAGGAGTCCAG---GCTTGGTT.................................................................................................................................................................2140.25100000000000001000
....................................................................................................................................................CA------------------------GGAGTCCAGGCTTGGCATTT................................................................................2240.25100000000000001000
...................................................................................................................................................CCA------------------------GGAGTCCAGGCTTGT.....................................................................................1840.25100000000000001000
.................................................................................................................................................ACCCA------------------------GGAGTCCAGGCTTG......................................................................................1940.25100000000000001000
..................................................................................................................................................CCCA------------------------GGAGTCCAGGCTTGGTT...................................................................................2140.25100000000000001000
..........................................................................................CCAGGAGTCCAG---GCTTGT...................................................................................................................................................................1840.25100000000000001000
........................................................................................ACCCAGGAGTCCAG---GCTTG....................................................................................................................................................................1940.25100000000000001000
..............................................................................................................................................................................................................AGAGCGAGAACGACGACTT---..............................................1940.25100000000000001000
............................................................................................................................................................................................................CGAGAGCGAGAACGACGAATA---..............................................2190.22200000000000002000
..................................................................................................................................................CCCA------------------------GGAGTCCAGGCTTTT.....................................................................................1950.20100000000000001000
...........................................................................................CAGGAGTCCAG---GCTTGGCTTT...............................................................................................................................................................2150.20100000000000001000
....................................................................................................................................................CA------------------------GGAGTCCAGGCTTGGCTTT.................................................................................2150.20100000000000001000
.........................................................................................CCCAGGAGTCCAG---GCTTTT...................................................................................................................................................................1950.20100000000000001000
.........................................................................................CCCAGGAGTCCAG---GCTTTTT..................................................................................................................................................................2080.13100000000000001000
..................................................................................................................................................CCCA------------------------GGAGTCCAGGCTTTTT....................................................................................2080.13100000000000001000
droSec2
CAGTGTAT---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCGCAGGCGACGAGAGCGAGAACGACGACGG---CCTGT---GAATAA--------AA-----T-GC----GATTAGTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................CAGCAGCGCAGGCGACGAGAGT...............................................................2211.0010100
...........................................................................................................................................................................................................ACGAGAGCGAGAACGACGACG..................................................2111.0010100
..............................................................................................................................................................................................AGCAGCGCAGGCGACGAGAGC...............................................................2111.0010100
.................................................................................................................................................................................GTCCAGGCTTGGCAGCAGCGC............................................................................2140.5020101
...................................................................................................................................................................................CCAGGCTTGGCAGCAGCGCAG..........................................................................2140.2510100
.....................................................................................................................................................................................AGGCTTGGCAGCAGCGCAGGT........................................................................2140.2510100
CAGTGTAT---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CATTA.............................................................................................................................2340.2510100
................................................................................................................................................................................AGTCCAGGCTTGGCAGCAGCGTT...........................................................................2340.2510100
CAGTGTAT---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACTT.............................................................................................................................2340.2510100
dm3
AGGGGTAGGCC--------------------------------AT------TA-------------------------------GTACAGCCAGAGGAGAGTA---------AGCCACGTAAGCAGTGTAGGCCAAAGGCG---CACCAA------------------------TCAGTCCAGGCTTGGCAGCAGAGCAGGAGACGATGGCCAAGACAAGGACGT---CCTGT---GAATAA--------AA-----T-AC----AATTAGTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................CAGGCTTGGCAGCAGAGCAGG.........................................................................2123.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000000000000000000000000000000000000100010
.....................................................................................TACAGCCAGAGGAGAGTA---------AGCCACG...........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TA---------AGCCACGTAAGCAGTGTAG...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AAGACAAGGACGT---CCTGT---CG....................................2030.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AGGCTTGGCAGCAGAGCAGGA........................................................................2120.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AGGCTTGGCAGCAGAGCAGGAG.......................................................................2220.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GGCTTGGCAGCAGAGCAG..........................................................................1820.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GGCTTGGCAGCAGAGCAGGA........................................................................2020.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TTGGCAGCAGAGCAGGAGACGATGGG...............................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................GAGCAGGAGACGATGGCCAAG...........................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................TTGGCAGCAGAGCAGGAGACG....................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................AGGCTTGGCAGCAGAGCAGG.........................................................................2020.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AGCAGAGCAGGAGACGATGGC...............................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................TGGCCAAGACAAGGACGT---CGG...........................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................AGACAAGGACGT---CCTGT---GA....................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AGTCCAGGCTTGGCAGCAGT..............................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................GTCCAGGCTTGGCAGCAT...............................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGAGTAA---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCACAGGCAACGAGTGCGAGGACGACGACGG---CCTGT---GAATAA--------AT-----C--AGCTTGATTAGT--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.AGAGTAA---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACT..............................................................................................................................2140.2510000100
droYak3
CAGAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGAGTCCAGGCTTGGCAGCAGCACAGGCAACGAGTGCGAGGACGACGACGG---CCTGT---GAATAA--------AT-----G--A----GGTTGGT--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...AGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------....................................................................................................2122.50500230000000
..GAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------....................................................................................................2221.50303000000000
..GAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCC.............................................................................................................................2121.50300210000000
.......G---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGAG................................................................................................2121.00200110000000
..GAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACTA.............................................................................................................................2120.50101000000000
......AG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCA------------------------GGC.................................................................................................2120.50100100000000
..GAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACC..............................................................................................................................2020.50100100000000
...AGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACCCC------------------------....................................................................................................2120.50100100000000
..GAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CA................................................................................................................................1820.50100100000000
...................................................................................................................................GCCAGGGGAG---CACCCA------------------------GGAG................................................................................................2020.50101000000000
CAGAGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGGGGAG---CACA..............................................................................................................................2220.50100100000000
....................................................................................................................................................CA------------------------GGAGTCCAGGCTTGGCAGC.................................................................................2170.43300210000000
............................................................................................................................................G---CACCCA------------------------GGAGTCCAGGCTTG......................................................................................21130.08100010000000
droEug1
CGGTATAAGCC--------------------------------AG------CG-------------------------------------------------------------------GGGAAGTGTAGGCCAGAGGAG---CACCAA------------------------TGAGTCCTGGTTTGGCAGCTACGCAGGCAACAAGAGCGAGGACAACAACGG---CCTAT---GAATAA--------AT-----T--A----ATTCAATTASizeHit CountTotal NormTotal
No Reads
droBia1
CAGTGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGAGGGG---CGCCCA------------------------GGAGGCCGGGCTTGGCAGCAGCACAGGCAACGAGGGCGAGGATAACAACGG---CCTAA---GGAGGA--------AA-----A-AC----GTTTAGAAASizeHit CountTotal NormTotal
No Reads
droTak1
AAGTGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGAGGAG---CACCCA------------------------GAAGTCCTGGTTTGGCAGCAGCACAGGCAACGAGGGCGAGGACAACAACGG---CCTGT---GGATAA--------CA-----A-AC----ATTTATAAASizeHit CountTotal NormTotal
No Reads
droEle1
CAGTGTAG---------------------------------------------------------------------------------------------------------------------------GCCAGAGGAG---CACCCA------------------------AAAGTCCTGGCTTGGCAGCAGCACAGGCAACGAGAGCGAGGACAACAACGG---CCTGT---GAACAA--------AA-----A--GGTTTGATTAGT-ASizeHit CountTotal NormTotal
No Reads
droRho1
CGGTGTATGCC--------------------------------AG------GG-------------------------------------------------------------------GAGAGGAGTAGGCCAATGGAG---CACCCA------------------------GAAGTCCTGGCTTGGCAGCAGCACAGGCAACGATAGCGAGGACAACAACGG---CCTGC---GGATAA--------AA-----ACAT----ATTTAGAAASizeHit CountTotal NormTotal
No Reads
droFic1
CAGCAAATGG--------------------------AGTTCCCAG------AGGAGCTGC---------------------------------------------GA------------ATGGAGTT----CCCAGAGGAG---CAGCCAGTGGAGCAGGAGCGTGGAAGGGAAGCAGACCAGCCTGGGCGGAAGC-CA-----------CGCAAAGAGCAACGA---GCTGG---AAATAA--------A-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGACTTTGGCA--------------------------------AG----------------------------------GACGGGCTCCTGAACGATAGTGG------T---GGCAGCAGGAGCACTGTAGACCAGAGGAGCGGCGGCCA------------------------GGTGACCGGGCTTGGCGGCGGCGACGGCCAGGAGAGCGGCGAG---AACGA---ACTGC---GGGTGG--------AG-----AAAG----GGTTA--TASizeHit CountTotal NormTotal
No Reads
droAna3
CTGCGTAAGCC--------------------------------AG------AG-------------------------------------------------------------------GAGCGGAGTAGGCCAGAGGAG---CTCCCA------------------------GTAGTCCTGGCTTGGCAGCAGCACAGGCAACGATGGCAAGGACAACAACGG---CCTGT---AAAGGA--------GA-----G--G----AATTTTTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGGTGTAGGCC--------------------------------AG------AG-------------------------GAGCGGAGTAGGCCAG------------------------AGGCGCAGTGTAGGCTAGAGGAG---CTCCCA------------------------GAAGTCCTGGCTTGGCAGCGGCACAGGCGACAATAGCGAGGATGACAACAG---CCTGA---AGATGG--------AA----------------------SizeHit CountTotal NormTotal
No Reads
dp5
CGGTGACAAC------------------------------------------------------------------AGGAGCTGGTGCAGCAACGACAGCGGCAGGA------------ATGGCGTTGTAGGCCAGAGGAG---CAGCAA------------------------GGAAGCCGGGCTTGGCAGAAGCGCAGGCCAGGATGGCGAGGATGACGGCAG---CCTGT---ATGTGG--------AAGAGAAA-GA----CGTTGCTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....ACAAC------------------------------------------------------------------AGGAGCTGGTGCAGC.......................................................................................................................................................................................2030.3310100000000
...............................................................................................................................GTAGGCCAGAGGAG---CAGCA.............................................................................................................................1940.2510000010000
..............................................................................................................................TGTAGGCCAGAGGAG---CAGT..............................................................................................................................1950.2010100000000
droPer2
CGGTGACAAC------------------------------------------------------------------AGGAGCTGGTGCAGCAACGACAGCGGCAGGA------------ATGGCGTTGTAGGCCAGAGGAG---CAGCAA------------------------GGAAGCCGGGCTTGGCAGAAGCGCAGGCCAGGATGGCGAGGATGACGGCAG---CCTGT---ATGTGG--------AAGAGAAA-GA----CGTTGCTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...TGACAAC------------------------------------------------------------------AGGAGCTGGTGCAG........................................................................................................................................................................................21213.00260000026
...TGACAAC------------------------------------------------------------------AGGAGCTGGTGCA.........................................................................................................................................................................................2025.00100000010
.....ACAAC------------------------------------------------------------------AGGAGCTGGTGCAG........................................................................................................................................................................................1923.006000006
......CAAC------------------------------------------------------------------AGGAGCTGGTGCAGCA......................................................................................................................................................................................2022.505000005
.....ACAAC------------------------------------------------------------------AGGAGCTGGTGCAGCA......................................................................................................................................................................................2122.505000005
..................................................................................................................................................GCAA------------------------GGAAGCCGGGCTTG......................................................................................1832.006000006
.........................................................................................................................................GGAG---CAGCAA------------------------GGAAGCCGG...........................................................................................1931.334000004
......................................................................................................................................AGAGGAG---CAGCAA------------------------GGAAGCCG............................................................................................2131.334000004
......................................................................................................................................AGAGGAG---CAGCAA------------------------GGAAGC..............................................................................................1931.003000003
.......................................................................................................................................GAGGAG---CAGCAA------------------------GGAAGCC.............................................................................................1931.003000003
..................................................................................................................................................GCAA------------------------GGAAGCCGGGCTTGG.....................................................................................1931.003000003
......................................................................................................................................AGAGGAG---CAGCAA------------------------GGAAGCC.............................................................................................2031.003000003
.........................................................................................................................................GGAG---CAGCAA------------------------GGAAGCCGGGC.........................................................................................2131.003000003
......................................................................................................................................................................................GGCTTGGCAGAAGCGCAGG.........................................................................1930.672000002
..........................................................................................................................................................................................................CAGGATGGCGAGGATGACGG....................................................2030.672000002
.................................................................................................................................................AGCAA------------------------GGAAGCCGGGCTTG......................................................................................1930.672000002
...............................................................................................................................................................................................GAAGCGCAGGCCAGGATGGCG..............................................................2130.672000002
.....................................................................................................................................................................................................CAGGCCAGGATGGCGAGGATG........................................................2130.672000002
...................................................................................................................................GCCAGAGGAG---CAGCAA------------------------GGAAG...............................................................................................2130.672000002
......CAAC------------------------------------------------------------------AGGAGCTGGTGCAGC.......................................................................................................................................................................................1920.501000001
...TGACAAC------------------------------------------------------------------AGGAGCTGGTGCAA........................................................................................................................................................................................2120.501000001
.........C------------------------------------------------------------------AGGAGCTGGTGCAGCAACGAC.................................................................................................................................................................................2220.501000001
.....ACAAC------------------------------------------------------------------AGGAGCTGGTGCAGC.......................................................................................................................................................................................2020.501000001
............................................................................AGGAGCTGGTGCAGCAACGAC.................................................................................................................................................................................2120.501000001
....GACAAC------------------------------------------------------------------AGGAGCTGGTGCAG........................................................................................................................................................................................2020.501000001
...TGACAAC------------------------------------------------------------------AGGAGCTGGTGA..........................................................................................................................................................................................1920.501000001
......CAAC------------------------------------------------------------------AGGAGCTGGTGCAGCAA.....................................................................................................................................................................................2120.501000001
...TGACAAC------------------------------------------------------------------AGGAGCTGGTGCAGC.......................................................................................................................................................................................2220.501000001
....................................................................................................................................................................................................GCAGGCCAGGATGGCGAGGA..........................................................2030.331000001
......................................................................................................................................................................................................AGGCCAGGATGGCGAGGATGA.......................................................2130.331000100
..............................................................................................................................................................................................AGAAGCGCAGGCCAGGATGG................................................................2030.331000001
.......................................................................................................................................GAGGAG---CAGCAA------------------------GGAAGCCG............................................................................................2030.331000001
...........................................................................................................................................................................................................AGGATGGCGAGGATGACGGCA..................................................2130.331000001
...........................................................................................................................................................................................................AGGATGGCGAGGATGACGG....................................................1930.331000001
.................................................................................................................................................................................AGCCGGGCTTGGCAGAAGCGC............................................................................2130.331000001
................................................................................................................................................................................AAGCCGGGCTTGGCAGAAGCG.............................................................................2130.331000001
......................................................................................................................................AGAGGAG---CAGCAA------------------------GGAAGCCC............................................................................................2130.331000001
.................................................................................................................................................................................AGCCGGGCTTGGCAGAAGCG.............................................................................2030.331000001
............................................................................................................................................G---CAGCAA------------------------GGAAGCCGGGCTTGG.....................................................................................2230.331000001
...............................................................................................................................................................................................GAAGCGCAGGCCAGGATGG................................................................1930.331000001
...........................................................................................................................................AG---CAGCAA------------------------GGAAGCCGGGC.........................................................................................1930.331000001
.........................................................................................................................................................................................................CCAGGATGGCGAGGATGACGG....................................................2130.331000001
.........................................................................................................................................................................................................CCAGGATGGCGAGGATGAC......................................................1930.331000001
droWil2
CCACATAGGCG--------------------------------GC----------------------ACTACC-------------T--------ACGACAGC---------------TGGAGCAGTGTAGGCCAGAGGAGCAGCAGCCA------------------------ATATTCCAGGCTTGGCAGCGGCGACAGCCACAACAGCGAAGAAGCAGACGGCGAACTAAGGGATGGAG--------GATAAGGA-TT----CGTTGGTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CAGCAGCGA------------------TACCATTGAAGTTCCTGGCCACCACTTGGCTGCTGGTGGCAGTTACCACAGGAGCGGGTGCAGCGATGATGGCAGCCGGA---------------------GCAGCCAGCGGTG---TGTGCA------------------------GTATTCCAGGCTTGGCGGCGACGCAAGCGAGCAGGGCGCAGAGGACGACAG---TCTGA---ACAGAA--------AA-----T-AT----GAT------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CAGTTATGAC------------------------------------------------------------------AGGTGCAGGGGCAGCCAGGAGGGCGGCAGGA---------------------GCAGCGAGCGGTG---CGTGCA------------------------GCAATCCTGGTTTGCCGGCGGCGCAGGCAATCAGAGCGCAGAGGACAACGG---CCTGA---AGAAAG--------TG----------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAGCGGCAATAACGGGTGCAGCTGCGATGCCATTGAACGTCCTGGCCACCACTTGGCTACTGGCAGCGGTAATCACAGGTGTAGGTGCTGCAAGGACGGCAGCTGGA---------------------GCAGCCAGCGGTG---CATGCA------------------------GCAATCCTGGCTTGCCGGCAACGCAGGCAACCAGAGCGCAGAGGACAACAG---CCTGT---GAAGGATTACACGGAA-----T-AC----AATGATTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:32 PM