ID:

dsi_26203

 Coordinate:

x:6760073-6760222 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -13.6 -13.4 -13.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
star
  1. 2r:12978624-12978641 -
  2. dsi_19936  3r:663398-663415 +
  3. 3r:13906166-13906183 +
  4. 3r:17336642-17336659 +
  5. dsi_16035  3r:24243472-24243489 +
  6. x:1333888-1333905 -
  7. dsi_26203  x:6760102-6760119 -
  8. x:8562146-8562163 +
  9. x:11604113-11604130 -
  10. x:15925287-15925304 -
  11. x:20010731-20010748 -

Sense Strand Reads

TAAAAAGTTAAGTTTCAAAAGTAACACAGTTACCGTTCAAGTAAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATTAAATTTCGGTCGCGAAAAGTGCGAAAAAGTCCGCAAAAATGCAAATACTTAACTCTCCTCTGTGTGTGCGCCTGTGTGTGTGTGCGTGTCCTTAACTGTGTGTGTGTGAGGGAAAGAGAGCGCCAGAATAGAAAGAATTTTTCAAATTGCACTGCGCTTACA
***********************************************************************************..((.......(((.((((...((...((..((((..(((....)))....))))...))....)).....)))).))).......))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M024
male body
................................................................................................................................................................................................................................ATTTTTCAAATTGCACTG........ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................AAATTAAATTTCGGTCGCGAAAAGTGC............................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTGCGCCTGTGTGTGTGT............................................................................... 18 0 11 1.00 11 0 0 11 0 0 0 0 0 0 0
.................................CGTTCAAGTAAAAGTCAGTA..................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................AAAGGTGGTTAAAGTTGTTAA......................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................AGGGAAAGAGAGCGCCAGAA.................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................AGAGAGCGCCAGAATAGAAA............................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................ACCGTTCAAGTAAAAGTCAGTAAGTGA................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TGTGTGTGCGCCTGTGTGAGTGT............................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................AGCGACAGAATAGACAGAA......................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................AGAGGGCCATACTAGAAAGA.......................... 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
...............................................TCAGTAAGTGGATAAAAA......................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0
..................................................................................AAAAGTAAATGTCGGTCG...................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................ACAGTGTGTGTCTGAGCGAA................................................ 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................TGCGTGCCTGGCCTTAACT................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................TGTGTGTGTGTGAGG................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................CTGTGTGTGTGTGCG............................................................................ 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATTTTTCAATTCAAAGTTTTCATTGTGTCAATGGCAAGTTCATTTTCAGTCATTCACTTATTTTCACCAATTTCAACAATTCTTTTAATTTAAAGCCAGCGCTTTTCACGCTTTTTCAGGCGTTTTTACGTTTATGAATTGAGAGGAGACACACACGCGGACACACACACACGCACAGGAATTGACACACACACACTCCCTTTCTCTCGCGGTCTTATCTTTCTTAAAAAGTTTAACGTGACGCGAATGT
*******************************************************************************..((.......(((.((((...((...((..((((..(((....)))....))))...))....)).....)))).))).......))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M023
head
 O002
Head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...................TCATTGTGTCAATGGCAAGTT.................................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0
...................................................................................................................................................GACACACACGCGGACACAC.................................................................................... 19 0 1 2.00 2 1 0 1 0 0 0
..............................ATGGCAAGTTAATTTTCAGTC....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..................................................................................................................................................AGACACACACGCGGACAC...................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
................................................................CACCAATTTCAACAATTCT....................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................................................................................................................AAAAAGTTTAACGTGACG....... 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................CACACACACTCCCTTTCTCT........................................... 20 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................ACACACACGCGGACACAC.................................................................................... 18 0 3 0.67 2 2 0 0 0 0 0
...............................................................................................................................................................GACACACGCACACGCGCAGGA...................................................................... 21 2 4 0.25 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................AAAAAGTTTGTCGTGACGC...... 19 2 5 0.20 1 0 0 0 0 1 0
........................................................................................................................................................ACACGCGGACACACA................................................................................... 15 0 17 0.06 1 0 0 0 0 0 1
.TTTTTGAATTCAAAG.......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1
.......................GGGGTCAATGGCAAGT................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:6760023-6760272 - dsi_26203 TAAAA-AGTTAAGTTTC--------------------AAAAGTAA--------------------CACAGT-T-------A-C---------------CGTTCAAGT-AAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------AAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------GCAAATACT----TAACTCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGAAAGAGAGCGCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCACTGCGCTT-----------------------------------------------------ACA---
droSec2 scaffold_24:388663-388918 - TAAAA-AGTTAAGTTTC--------------------AAAAGTAA--------------------CACAAA-AACCAGTTA-C---------------CGTTCAAGT-AAAAGTCAGTAAGTGAAT-AAAGTGGTTAAAGTTGTTAAGAAAATT----------------AAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------GCAAATACT----TAACTCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGAAAGAGAGCTCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCACTGCGCTT-----------------------------------------------------ACA---
dm3 chrX:7179552-7179811 - TAAAAAAGTTAAGTTGC--------------------AAAAGTAA--------------------CACAAAAAACCAGTTAAA---------------CGTTCAAGT-AAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------GCAAATACT----TAACTCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GAGAGGGAAAGAGAGCGCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCACTGCGCTT-----------------------------------------------------ACA---
droEre2 scaffold_4690:16083526-16083789 - TAAAA-AGTTATGTTGC--------------------AAAAGTAA--------------------TACAGT-AACCAGTAAA---------AAGTAACCGTTCAAGTCAAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------CCAAATAAT----TTACTTT----CTGT---G-------------------------TGTGCACC------------------------------------------------T------GTGTGTG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGGAAGAGAGCGCCAGAATT------------------------GAAA-----------------------------------GAATTTTT---CGAATTGCACTGCGCTT-----------------------------------------------------ACA---
droYak3 X:14177735-14177997 + TAAAA-AGTTAAGTTTA--------------------AAAAGTAA--------------------CACAGT-AACCAGTAAAC---------------CGTTCAAGTCAAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAAAAAGTCCGCAA-------------------------------------------------------------------------AA---------------AAATCCAAATAAT----TAACTCTCT-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGGAAGAGAGCGCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCATTGCGCTT-----------------------------------------------------ACA---
droEug1 scf7180000409216:46958-47206 - TAAAA-AGTTAAGTCCA--------------------AAATGTAA--------------------CAGAGT-AACCAGTTAAC---------------AGTTATACACAAAAGTCAGTAAGTGAATAAAAGTGGTAAAAGTTTGTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA------------------------------------------------------------------------AAAAT-----------------CCGAATAAT----TAACTATTT-TATGT---G-------------------------TGTGCGTC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------TACGAGT-----------GTG--TAGGAGAGAGCGTGAGAA---------------------------AAA-----------------------------------TAAATTTT---CCAATTGCTC------------------------------------------------------------------
droBia1 scf7180000301715:581842-582098 + TACAA-AGTTAAGTTCG--------------------AAATGTAA--------------------CACAGT-T-------AAC---------------AGTAACAGTCGACAGTCCGTAAGTGAA--AAAGTGGTCAAAGTTGTTCAGTAAATC----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAATGCAAGTCTGCA-AAAATCCAAATAAT----TAACTCTCT-CCTGT---G-------------------------TGTGCGTC------------------------------------------------T------GTGTGTG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----G-------------TGAGGCGGAGAGTGC--GAGAATG------------------------GAGG-----------------------------------AAATTTTT---CCAATTGC-------TC-----------------------------------------------------ACA---
droTak1 scf7180000415381:334013-334280 - TACAA-AGTTAAGTTCA--------------------AAACGTAA--------------------CACAGT-AACCAGTAAAC---------------AGTAAAAGTCGAAAGTCAGTAAGTGAA--AAAGTGGTTCAAGTTGTTAAGTAAATC----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA-------------------------------------------------------------------------AAATGCAAGTCTGCAAAAAATCCAAATAAT----TAACTCTCT-CCTGT---G-------------------------TGTGCGTC------------------------------------------------TCTGTGTGT--GTG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----G-------------TGAGGGGGAGAGAGCGCGAGAATA------------------------GAAA-----------------------------------GAATTTTT---CCAATTGCTC------------------------------------------------------------------
droEle1 scf7180000491044:1412124-1412343 + TAAAA-GTTTAAAATGT--------------------AAAAGTAA--------------------TAAA------------------------------GTTAAAGTCGAAAGTCAGTAAGTGAA---AAGTGGTTAAAGTTGTTAAGTAAATC----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT------------------CAAATAAT----TAACTGTCT-GCTGT---G-------------------------TGTGCGTC------------------------------------------------T------G----TG----TGTGTGCGTGTCC--TTAACTG------TTTG------------------------------T----GT-----------GGGAGGG--AGAGAGCGTGGT-----------------------------TAA-----------------------------------GAATTTTC---CCAATTGC--------------------------------------------------------------------
droRho1 scf7180000779588:583971-584203 - TAAAA--GTT-----CA--------------AAATGTAAAAGTAT--------------------TACA------------------------------GTAAAAGTCGAAAGTCAGTAAGTGAA--AAAGTGGTTAAAGTTGTTAAGTAAATC----------------TAA---------------------------------------TTTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA-------------------------------------------------------------------------AAATTCAAG-------AATA-TCAAAAAAT----TAACTTTCT-GATGT---G-------------------------TGTGCGTC------------------------------------------------T------G----TG----TGTGTGCGTGTCC--TTAACTG------TTTG------------------------------T----GT-----------GTGAGAGGGAGGGAGCGCGTTTAT----------------------------------------------------------------AAATTTTT---CCAATTGC--------------------------------------------------------------------
droFic1 scf7180000454045:621056-621308 - TAAAA--GTT-----TT------AATTGTACAAATGTAACAGTAA--------------------CAAA------------------------------GTAAAAGTCAAAAGTCAGTAAGTGAA--AAAGTGGTTAAAGTTGTTCAGTAAATC----------------CGA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAGTCCAAG----CAAAAAAGTCAAATAAT----TAACTCTCT-CCTGC---G-------------------------TGTGCGTC------------------------------------------------T------G----TG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----G-------------TGAGGGGGAGAGAGCGGGAGAACA------------------------CAAA-----------------------------------GAATTTTT---CCAATTGC-------TC-----------------------------------------------------ACA---
droKik1 scf7180000302544:1235123-1235409 - AGAAA-AATGA-GT-----------------------AAAAGTAAAAAGTAAA---------------AGT-T-------A-A---------------TGTACAAGTTGAA----AGTAAGTGAA---AAGTGGTTAA-G----TAAAAAAATC----------------TG--------------------------------------TCTGTCGGTCGCGAAAAGTGCGCAAA--AGTCCGAAA--------------------------------------------------------------------------------------------------ATAAT----TAACTCTCT-CCTGT---G-------------------------TGTGTGCCTC-------------------------TGTGTATGTTCGAGTGTGTGT-------GT--GCG----TGCGTGCGTGTCC--T-ACTTG------TGTGTGTACAA--------------------------------TTCAGAAGGGCGAGGGAGACAGACCGTC---------------------------------------CCGCCGTTGTCAGAATGAGAATGTGAAGAGGAATGGCG---CAAGTTATCCCGTATTT-----------------------------------------------------TCA---
droAna3 scaffold_13117:2955839-2956191 - TAAAA-AGTA-----------------------------------------AAAGTCA--------------------------------------------------------CCCAAAGTGAA---AAGTGGTTCAAGTTCTTCAGTCA---------------------A-------------------------------------GTAGTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAGAAAGAAAAAAAAAAAAAAGAAAAGTTGTAAAATAAGAAAAAAAAAAAAGAAAA------------GAAAAAAAAAAT-----------------TTAAAGAAC--AATAACTCTCT-CCCGT---G-------------------------TTTCTGT--------------------------------------------------------GT--CTG----TGTGTTCGTGTCC--T-ACCTG------TGTGTGTACATTCAGTTGCCAGAGGAAAA-------------------------------GCGAGAGCGGGAGG---TGGT--GGTG-CTCAGATCT----CCCC-----------------------------------CAATTTTTTGATAAG---TCCCGTAATTGCAATTGCAATTGTTGTTCTTGTTCTTGTTGTTGTTGGTGCACAGCACTGTGCACG---
droBip1 scf7180000396696:178501-178783 + TAAAA-AGTA-----------------------------------------AAAGTCA--------------------------------------------------------CCCAAAGTGAA---AAGTGCTTCAAGTTCATAA----ATC-----------------AA-------------------------------------CTAGTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA----------------AAAAAAAGTTGTAAAATAAGAAAAAAAAAGTAGAAAAAAAAAG--------------AAAT-----------------G-AAAGAAC--AATAACTCTCT-CCCGT---G-------------------------TTTCTGT--------------------------------------------------------GT--CTG----TGTGTTCGTGTCC--T-ACCTG------TGTGTGTACCTTAG-TTGCCAGAGGAAAA-------------------------------GCGAGAGCGGGA--AG-TGGTGCATGGTCTCGGATC-----TGCC-----------------------------------CAGTCTTG--ACAAGTCCTCCCGTACTT-----------------------------------------------------GCA---
dp5 XL_group1e:11127254-11127674 - TGAAA-AGTGG--T-----------------TTATGCAAAAATAG--------------------CAAAAT-AAAGAGTATATTTGAGAAAAAGTAAA-------------------------------------------------ATATTAAGTGCAAAGTAAACACTTAATGGACCCCTTTCTTTTGAGCAGACTCTTCTCTGTCTGTTCGTCGGTCGCGAAAAGTGCGAAAAA-AGTCCGGCA-----------------------------------------------------------------------G-TT---------------A-AGTTAAAC---TCTCTATCTCTCT-CACACCTTATCCCTCTGTGTTAACAGTAACAGTGTCTGTGTCTCGTAGTGTCTCTCCCACATGCCATAATGTATATGTATGGGAGAGTGT-------------GAGTC-----GAGTGTCGAGTCGAGTGTATGTGTGTGTGTACTTTCA-TTG-----------GAGC------------------------GGGAAGAGAGCAAAAGG---CTGT--ATTT-TTCTGACTTTATTGAAAGTAAAGTATT------CCG----------------TTACCCGTTGTTTCC---CCCCGTAGCCGTA------------------------CGGGTCGCTGCTGC---------TTTG-----
droPer2 scaffold_14:568306-568726 - TGAAA-AGTGG--T-----------------TTATGCAAAAATAG--------------------CAAAGT-AAATAGTATATTTGAGAAAAAGTAAA-------------------------------------------------ATATTAAGTGCAAAGTAAACACTTAATGGACCCCTTTCTTTTGAGCAGACTCTTCTCTGTCTGTTCGTCGGTCGCGAAAAGTGCGAAAAA-AGTCCGGCA-----------------------------------------------------------------------G-TT---------------A-AGTTAAAC---TCTCTATCTCTCT-CACACTTTATCTCTCTGTGTTAACAGTAACAGTGTCTGTGTCTCGTAGTGTCTCTCCCACATGCCATAATGTATATGTATGGGAGAGTGT-------------GAGTC-----GAGTGTCGAGTCGAGTGTATGTGTGTGTGTACTTTCA-TTG-----------GAGC------------------------GGGAAGAGAGCAAAAGG---CTGT--ATTT-TTCTGACTTTATTGAAAGTAAAGTATT------CCT----------------TTACCCGTTGTTTCC---CCCCGTAGCCGTA------------------------CGGGTCGCTGCTGC---------TTTG-----
droWil2 scf2_1100000004590:1888008-1888216 - TTAAA-AACGC--T------------------------AAAGTGAACAG------------AAAGTCCAAAAA----------------------------GACAGTCGAAATTTCGCA---------------------------------------------------AAA---------------------------------------TTTCAGTCGCGAAAAGTGCTAAAG----T------------------------------------------------------------------------------------------------------------------------AA-CGTGT---G-------------------------TGTGTGCC------------------------------------------------G------AT--GTGT----GTGTGTGTTT------------------------AATTTGA-ATA-----------GAGAGT----GC-----------GAGAGAGT-T---------------------------------------GAGAGCAAATTACAGTTGTCAGACACT--------------ATATG-------------------------------TCGTTGTTGTTGTTGTAATTGTTGTTAGTGT---------TTTATT---
droVir3 scaffold_12970:1838790-1838979 - CACAA-ATTGT--T-------------------------------------AAAATTCTTAAAAATAAAGC-AAGTTTCGT-------------------------------GCTTGTGTGTGAA--AAACACA---------------------------------------------------------------------------------------------------------------------------------ACAAAAAATTTCAATAAAAGAAAAACAATTTCGGGAAAAACGGCAAAACGCCACGAAAAAC-----------------TCGCACACG----TACGCCTCTCTCTGT---G-------------------------TGTGTGTG------------------------------------------------T------GT--GTGT----GTGTGTGTGTGT------GTG------TGTG------------------------------T----GT-----------GTGAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:14976570-14976674 - TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---G-------------------------TGTACGTG------------------------------------------------T------GT--GTGT----TTGTGTGTCTTT--TT---TG------CATT--TAC-------------------------T----GTAGCC-------CTGAGAGA-------CACGAGCAAA------------------------CGTA-----------------------------------GTTCTTTT---ATTATTATTCAGTAATT----------------------------------------------------CATAAAA
droGri2 scaffold_14853:4580863-4581017 + CGAAA-AGCTCCGTTTCTCACGT--CTGTCTTGCGTTAAGAGTAC--AA------------AAAATT---------------G---------------CGATTCAGT-TAAGTTCAGTTCATTTGCAATTGTTTAAAAAGTT--TAAACAACAA----------------TTT---------------------------------------TATCGGTCGCGAAAAGTGCGAAAA--AAAAGTAAC-------------------------------------------------------------------------AAAA-----------------AAAAATACC----TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAAAA-AGTTAAGTTTC--------------------AAAAGTAA--------------------CACAGT-T-------A-C---------------CGTTCAAGT-AAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------AAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------GCAAATACT----TAACTCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGAAAGAGAGCGCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCACTGCGCTT-----------------------------------------------------ACA---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTT---CAAATTGCACTG................................................................1812.00220000000000000000
.....................................................................................................................................................AAATT----------------AAA---------------------------------------TTTCGGTCGCGAAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCC------------------------------------------------T------GT--GTGT----GTGT..........................................................................................................................................................................................................................................................18111.0011000011000000000000
..................................................................................................CGTTCAAGT-AAAAGTCAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAAAGAGAGCGCCAGAA........................................................................................................................................................2011.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGCGCCAGAATA------------------------GAAA-----------------------------------.......................................................................................2011.00100000000010000000
................................................................................A-C---------------CGTTCAAGT-AAAAGTCAGTAAGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------TGTG------------------------------T----GT-----------GTGAGG.........................................................................................................................................................................15200.05100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------T------GT--GTGT----GTGTGCG.......................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
TAAAA-AGTTAAGTTTC--------------------AAAAGTAA--------------------CACAAA-AACCAGTTA-C---------------CGTTCAAGT-AAAAGTCAGTAAGTGAAT-AAAGTGGTTAAAGTTGTTAAGAAAATT----------------AAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------GCAAATACT----TAACTCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGAAAGAGAGCTCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCACTGCGCTT-----------------------------------------------------ACA---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................A--------------------CACAAA-AACCAGTTA-C---------------CGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020002
.....................................................................................................................................................................................................................TTCGGTCGCGAAAAGTGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT---CAAATTGCACTGCGCTT-----------------------------------------------------......2111.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTG------TGTG------------------------------T----GT-----------GTGAGGGAAAGAG..................................................................................................................................................................2411.0010100
..............................................................................................................................................................................................................................................................................................................................................................................TGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----..............................................................................................................................................................................................................................................................1940.2511000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCC------------------------------------------------T------GT--GTGT----GTGTG.........................................................................................................................................................................................................................................................19110.0910010
dm3
TAAAAAAGTTAAGTTGC--------------------AAAAGTAA--------------------CACAAAAAACCAGTTAAA---------------CGTTCAAGT-AAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------GCAAATACT----TAACTCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GAGAGGGAAAGAGAGCGCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCACTGCGCTT-----------------------------------------------------ACA---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................AGTAAGTGAATAAAAGTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------TGTG------------------------------T----GT-----------GAGAGGGAAA.....................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGTCC--TTAACTG------TGT................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTG------TGTG------------------------------T----GT-----------GAGAGGGAAA.....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------GAGAGGGAAAGAGAGCGCCAG..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AACTCTCC-TCTGT---G-------------------------TGTGCG...................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAAAGAGAGCGCCAGAATA------------------------G.............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT----GTGTGCGTGTCC--TTAACTG------TGT................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTG------TGTG------------------------------T----GT-----------GAGAGGGAAAGAGAGC...............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAGAGAGCGCCAGA.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AAGAAAATT----------------CAA---------------------------------------TTTCGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TGAATAAAAGTGGTTAAAGTTGTTAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GGTCGCGAAAAGTGCGAAAA--AGTCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTG------TGTG------------------------------T----GT-----------GAGAGGGAAAGA...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................TAACTCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------.................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------G..............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCC--TTAACTG------TGTG------------------------------T----GT-----------...............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAAGAGAGCGCCAGAATA------------------------..............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTC...................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAGAGAGCGCCAGAATA------------------------G.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AAAGTGGTTAAAGTTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----GTGTGCGTGTCC--TTAACTG------...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCTCC-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------..........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGCGCCAGAATA------------------------GAAA-----------------------------------.......................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA------------------------GAAA-----------------------------------GAATTTTT---CAA.........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TGTG------------------------------T----GT-----------GAGAGGGAAAGAGA.................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................AAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................GTTAAGAAAATT----------------CAA---------------------------------------TTTCGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCC------------------------------------------------T------GT--GTGT----GTGTGCGTG.....................................................................................................................................................................................................................................................2030.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGG..........................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTG.....................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCC------------------------------------------------T------GT--GTGT----GTGTGCGTG.....................................................................................................................................................................................................................................................1950.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTG...........................................................................................................................................................................................................................................................1950.2010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CC------------------------------------------------T------GT--GTGT----GTGTGCGTG.....................................................................................................................................................................................................................................................18110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------T------GT--GTGT----GTGTGCGTGT....................................................................................................................................................................................................................................................18170.1830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
TAAAA-AGTTATGTTGC--------------------AAAAGTAA--------------------TACAGT-AACCAGTAAA---------AAGTAACCGTTCAAGTCAAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT-----------------CCAAATAAT----TTACTTT----CTGT---G-------------------------TGTGCACC------------------------------------------------T------GTGTGTG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGGAAGAGAGCGCCAGAATT------------------------GAAA-----------------------------------GAATTTTT---CGAATTGCACTGCGCTT-----------------------------------------------------ACA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................G-------------------------TGTGCACC------------------------------------------------T------GTGTGTG----TGTGTGC........................................................................................................................................................................................................................................................2411.0010001000
................................................................................................................GTCAGTAAGTGAATAAAAGTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
TAAAA-AGTTAAGTTTA--------------------AAAAGTAA--------------------CACAGT-AACCAGTAAAC---------------CGTTCAAGTCAAAAGTCAGTAAGTGAATAAAAGTGGTTAAAGTTGTTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAAAAAGTCCGCAA-------------------------------------------------------------------------AA---------------AAATCCAAATAAT----TAACTCTCT-TCTGT---G-------------------------TGTGCGCC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----GT-----------GTGAGGGGAAGAGAGCGCCAGAATA------------------------GAAA-----------------------------------GAATTTTT---CAAATTGCATTGCGCTT-----------------------------------------------------ACA---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................CAA---------------------------------------TTTCGGTCGCGAAAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
TAAAA-AGTTAAGTCCA--------------------AAATGTAA--------------------CAGAGT-AACCAGTTAAC---------------AGTTATACACAAAAGTCAGTAAGTGAATAAAAGTGGTAAAAGTTTGTAAGAAAATT----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA------------------------------------------------------------------------AAAAT-----------------CCGAATAAT----TAACTATTT-TATGT---G-------------------------TGTGCGTC------------------------------------------------T------GT--GTGT----GTGTGCGTGTCC--TTAACTG------TGTG------------------------------TACGAGT-----------GTG--TAGGAGAGAGCGTGAGAA---------------------------AAA-----------------------------------TAAATTTT---CCAATTGCTC------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TACAA-AGTTAAGTTCG--------------------AAATGTAA--------------------CACAGT-T-------AAC---------------AGTAACAGTCGACAGTCCGTAAGTGAA--AAAGTGGTCAAAGTTGTTCAGTAAATC----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAATGCAAGTCTGCA-AAAATCCAAATAAT----TAACTCTCT-CCTGT---G-------------------------TGTGCGTC------------------------------------------------T------GTGTGTG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----G-------------TGAGGCGGAGAGTGC--GAGAATG------------------------GAGG-----------------------------------AAATTTTT---CCAATTGC-------TC-----------------------------------------------------ACA---SizeHit CountTotal NormTotal
No Reads
droTak1
TACAA-AGTTAAGTTCA--------------------AAACGTAA--------------------CACAGT-AACCAGTAAAC---------------AGTAAAAGTCGAAAGTCAGTAAGTGAA--AAAGTGGTTCAAGTTGTTAAGTAAATC----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA-------------------------------------------------------------------------AAATGCAAGTCTGCAAAAAATCCAAATAAT----TAACTCTCT-CCTGT---G-------------------------TGTGCGTC------------------------------------------------TCTGTGTGT--GTG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----G-------------TGAGGGGGAGAGAGCGCGAGAATA------------------------GAAA-----------------------------------GAATTTTT---CCAATTGCTC------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAAAA-GTTTAAAATGT--------------------AAAAGTAA--------------------TAAA------------------------------GTTAAAGTCGAAAGTCAGTAAGTGAA---AAGTGGTTAAAGTTGTTAAGTAAATC----------------CAA---------------------------------------TTTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA-------------------------------------------------------------------------AAAT------------------CAAATAAT----TAACTGTCT-GCTGT---G-------------------------TGTGCGTC------------------------------------------------T------G----TG----TGTGTGCGTGTCC--TTAACTG------TTTG------------------------------T----GT-----------GGGAGGG--AGAGAGCGTGGT-----------------------------TAA-----------------------------------GAATTTTC---CCAATTGC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TAAAA--GTT-----CA--------------AAATGTAAAAGTAT--------------------TACA------------------------------GTAAAAGTCGAAAGTCAGTAAGTGAA--AAAGTGGTTAAAGTTGTTAAGTAAATC----------------TAA---------------------------------------TTTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA-------------------------------------------------------------------------AAATTCAAG-------AATA-TCAAAAAAT----TAACTTTCT-GATGT---G-------------------------TGTGCGTC------------------------------------------------T------G----TG----TGTGTGCGTGTCC--TTAACTG------TTTG------------------------------T----GT-----------GTGAGAGGGAGGGAGCGCGTTTAT----------------------------------------------------------------AAATTTTT---CCAATTGC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TAAAA--GTT-----TT------AATTGTACAAATGTAACAGTAA--------------------CAAA------------------------------GTAAAAGTCAAAAGTCAGTAAGTGAA--AAAGTGGTTAAAGTTGTTCAGTAAATC----------------CGA---------------------------------------TTTCGGTCGCGAAAAGTGCGAAAA--AGTCCGCAA-------------------------------------------------------------------------AAGTCCAAG----CAAAAAAGTCAAATAAT----TAACTCTCT-CCTGC---G-------------------------TGTGCGTC------------------------------------------------T------G----TG----TGTGTGCGTGTCC--TTAACTG------TGTG------------------------------T----G-------------TGAGGGGGAGAGAGCGGGAGAACA------------------------CAAA-----------------------------------GAATTTTT---CCAATTGC-------TC-----------------------------------------------------ACA---SizeHit CountTotal NormTotal
No Reads
droKik1
AGAAA-AATGA-GT-----------------------AAAAGTAAAAAGTAAA---------------AGT-T-------A-A---------------TGTACAAGTTGAA----AGTAAGTGAA---AAGTGGTTAA-G----TAAAAAAATC----------------TG--------------------------------------TCTGTCGGTCGCGAAAAGTGCGCAAA--AGTCCGAAA--------------------------------------------------------------------------------------------------ATAAT----TAACTCTCT-CCTGT---G-------------------------TGTGTGCCTC-------------------------TGTGTATGTTCGAGTGTGTGT-------GT--GCG----TGCGTGCGTGTCC--T-ACTTG------TGTGTGTACAA--------------------------------TTCAGAAGGGCGAGGGAGACAGACCGTC---------------------------------------CCGCCGTTGTCAGAATGAGAATGTGAAGAGGAATGGCG---CAAGTTATCCCGTATTT-----------------------------------------------------TCA---SizeHit CountTotal NormTotal
No Reads
droAna3
TAAAA-AGTA-----------------------------------------AAAGTCA--------------------------------------------------------CCCAAAGTGAA---AAGTGGTTCAAGTTCTTCAGTCA---------------------A-------------------------------------GTAGTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAGAAAGAAAAAAAAAAAAAAGAAAAGTTGTAAAATAAGAAAAAAAAAAAAGAAAA------------GAAAAAAAAAAT-----------------TTAAAGAAC--AATAACTCTCT-CCCGT---G-------------------------TTTCTGT--------------------------------------------------------GT--CTG----TGTGTTCGTGTCC--T-ACCTG------TGTGTGTACATTCAGTTGCCAGAGGAAAA-------------------------------GCGAGAGCGGGAGG---TGGT--GGTG-CTCAGATCT----CCCC-----------------------------------CAATTTTTTGATAAG---TCCCGTAATTGCAATTGCAATTGTTGTTCTTGTTCTTGTTGTTGTTGGTGCACAGCACTGTGCACG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------GCGAGAGCGGGAGG---TGGT--GGTG-...........................................................................................................................................2312.002100001
...........................................................................................................................................GTTCTTCAGTCA---------------------A-------------------------------------GTAGTCGGTCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
........................................................................................................................................................................................................................................................................................AAGAAAAAAAAAAAAGAAAA------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAGCGGGAGG---TGGT--GG..............................................................................................................................................2011.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCGGGAGG---TGGT--GGTG-...........................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGAGGAAAA-------------------------------GCGAGAGCGG.............................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTTGTTGTTGGTG...................1930.331100000
................................................................................................................................................................................................................................................................................................AAAAAAAGAAAA------------GAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2250.201010000
.............................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAAA------------GAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................2460.171010000
.................................................................................................................................................................................................................................................................................................AAAAAAGAAAA------------GAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................20170.122020000
..................................................................................................................................................................................................................................................................................................AAAAAGAAAA------------GAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................20130.081001000
...............................................................................................................................................................................................................................................................................................AAAAAAAAGAAAA------------GAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................21160.061001000
.........................................................................................................................................................................................................................................................AGAAAAAAAAAAAAAAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061001000
.....................................................................................................................................................................................................................................................................................................AAGAAAA------------GAAAAAAAAAAT-----------------G.................................................................................................................................................................................................................................................................................................................................................................................................20180.061010000
..................................................................................................................................................................................................................................................................................................AAAAAGAAAA------------GAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
........................................................................................................................................................................................................................................................................................AAGAAAAAAAAAAAAGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...............................................................................................................................................................................................................................................................................................AAAAAAAAGAAAA------------GAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
....................................................................................................................................................................................................................................................CAGAAAGAAAAAAAAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
.................................................................................................................................................................................................................................................................................................AAAAAAGAAAA------------GAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000
............................................................................................................................................................................................................................................................................................AAAAAAAAAAAGAAAA------------GAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...........................................................................................................................................................................................................................................................................................AAAAAAAAAAAAGAAAA------------GAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.....................................................................................................................................................................................................................................................................................................AAGAAAA------------GAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000
..........................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAGAAAA------------...............................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000
droBip1
TAAAA-AGTA-----------------------------------------AAAGTCA--------------------------------------------------------CCCAAAGTGAA---AAGTGCTTCAAGTTCATAA----ATC-----------------AA-------------------------------------CTAGTCGGTCGCGAAAAGTGCGCAAA--AGTCCGCAA----------------AAAAAAAGTTGTAAAATAAGAAAAAAAAAGTAGAAAAAAAAAG--------------AAAT-----------------G-AAAGAAC--AATAACTCTCT-CCCGT---G-------------------------TTTCTGT--------------------------------------------------------GT--CTG----TGTGTTCGTGTCC--T-ACCTG------TGTGTGTACCTTAG-TTGCCAGAGGAAAA-------------------------------GCGAGAGCGGGA--AG-TGGTGCATGGTCTCGGATC-----TGCC-----------------------------------CAGTCTTG--ACAAGTCCTCCCGTACTT-----------------------------------------------------GCA---SizeHit CountTotal NormTotal
No Reads
dp5
TGAAA-AGTGG--T-----------------TTATGCAAAAATAG--------------------CAAAAT-AAAGAGTATATTTGAGAAAAAGTAAA-------------------------------------------------ATATTAAGTGCAAAGTAAACACTTAATGGACCCCTTTCTTTTGAGCAGACTCTTCTCTGTCTGTTCGTCGGTCGCGAAAAGTGCGAAAAA-AGTCCGGCA-----------------------------------------------------------------------G-TT---------------A-AGTTAAAC---TCTCTATCTCTCT-CACACCTTATCCCTCTGTGTTAACAGTAACAGTGTCTGTGTCTCGTAGTGTCTCTCCCACATGCCATAATGTATATGTATGGGAGAGTGT-------------GAGTC-----GAGTGTCGAGTCGAGTGTATGTGTGTGTGTACTTTCA-TTG-----------GAGC------------------------GGGAAGAGAGCAAAAGG---CTGT--ATTT-TTCTGACTTTATTGAAAGTAAAGTATT------CCG----------------TTACCCGTTGTTTCC---CCCCGTAGCCGTA------------------------CGGGTCGCTGCTGC---------TTTG-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................CTCTTCTCTGTCTGTTCGTCGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................GTTCGTCGGTCGCGAAAAGTGCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
................................................................................................................................................................................................................TGTTCGTCGGTCGCGAAAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
..AAA-AGTGG--T-----------------TTATGCAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.........................................................................AAGAGTATATTTGAGAAAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
............................................................................................................................................................................ATGGACCCCTTTCTTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTACTTTCA-TTG-----------GAGC------------------------GGGAAGA...................................................................................................................................................................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCA-TTG-----------GAGC------------------------GGGAA.....................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................TGAGCAGACTCTTCTCTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................TCTGTCTGTTCGTCGGTCGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCA-TTG-----------GAGC------------------------GGGAAGA...................................................................................................................................................................2311.0010100000000
droPer2
TGAAA-AGTGG--T-----------------TTATGCAAAAATAG--------------------CAAAGT-AAATAGTATATTTGAGAAAAAGTAAA-------------------------------------------------ATATTAAGTGCAAAGTAAACACTTAATGGACCCCTTTCTTTTGAGCAGACTCTTCTCTGTCTGTTCGTCGGTCGCGAAAAGTGCGAAAAA-AGTCCGGCA-----------------------------------------------------------------------G-TT---------------A-AGTTAAAC---TCTCTATCTCTCT-CACACTTTATCTCTCTGTGTTAACAGTAACAGTGTCTGTGTCTCGTAGTGTCTCTCCCACATGCCATAATGTATATGTATGGGAGAGTGT-------------GAGTC-----GAGTGTCGAGTCGAGTGTATGTGTGTGTGTACTTTCA-TTG-----------GAGC------------------------GGGAAGAGAGCAAAAGG---CTGT--ATTT-TTCTGACTTTATTGAAAGTAAAGTATT------CCT----------------TTACCCGTTGTTTCC---CCCCGTAGCCGTA------------------------CGGGTCGCTGCTGC---------TTTG-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................GTAAACACTTAATGGACCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.............................................................................................................................................................................................................GTCTGTTCGTCGGTCGCGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................TAAACACTTAATGGACCCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................TATATTTGAGAAAAAGTAAA-------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............................................................................................................................................................................................................TGTCTGTTCGTCGGTCGCGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
TTAAA-AACGC--T------------------------AAAGTGAACAG------------AAAGTCCAAAAA----------------------------GACAGTCGAAATTTCGCA---------------------------------------------------AAA---------------------------------------TTTCAGTCGCGAAAAGTGCTAAAG----T------------------------------------------------------------------------------------------------------------------------AA-CGTGT---G-------------------------TGTGTGCC------------------------------------------------G------AT--GTGT----GTGTGTGTTT------------------------AATTTGA-ATA-----------GAGAGT----GC-----------GAGAGAGT-T---------------------------------------GAGAGCAAATTACAGTTGTCAGACACT--------------ATATG-------------------------------TCGTTGTTGTTGTTGTAATTGTTGTTAGTGT---------TTTATT---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGA-ATA-----------GAGAGT----GC-----------GAG............................................................................................................................................................................2011.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT------------------------AATTTGA-ATA-----------GAGA..................................................................................................................................................................................................1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGTCAGACACT--------------ATATG-------------------------------TCGT.............................................2511.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT----GC-----------GAGAGAGT-T---------------------------------------GAGAG.........................................................................................................................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------GAGAGAGT-T---------------------------------------GAGAGCAAA.....................................................................................................................1911.00100010
......................................AAAGTGAACAG------------AAAGTCCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...................................................................................................................CGCA---------------------------------------------------AAA---------------------------------------TTTCAGTCGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----------GAGAGT----GC-----------GAGAGAGT-T---------------------------------------GAGA..........................................................................................................................2411.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT----GC-----------GAGAGAGT-T---------------------------------------GAGAGCA.......................................................................................................................2111.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTACAGTTGTCAGACACT--------------.....................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCC------------------------------------------------G------AT--GTGT----GTGTGTGTT.....................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................................................................................................................................CTAAAG----T------------------------------------------------------------------------------------------------------------------------AA-CGTGT---G-------------------------TGTGT....................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................GT---G-------------------------TGTGTGCC------------------------------------------------G------AT--GTGT----G.............................................................................................................................................................................................................................................................1930.33101000
................................................................................................................................................................................................................................................................................................................................................................................T---G-------------------------TGTGTGCC------------------------------------------------G------AT--GTGT----G.............................................................................................................................................................................................................................................................1830.33100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG-------------------------------TCGTTGTTGTTGTTG..................................18180.06100010
droVir3
CACAA-ATTGT--T-------------------------------------AAAATTCTTAAAAATAAAGC-AAGTTTCGT-------------------------------GCTTGTGTGTGAA--AAACACA---------------------------------------------------------------------------------------------------------------------------------ACAAAAAATTTCAATAAAAGAAAAACAATTTCGGGAAAAACGGCAAAACGCCACGAAAAAC-----------------TCGCACACG----TACGCCTCTCTCTGT---G-------------------------TGTGTGTG------------------------------------------------T------GT--GTGT----GTGTGTGTGTGT------GTG------TGTG------------------------------T----GT-----------GTGAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---G-------------------------TGTACGTG------------------------------------------------T------GT--GTGT----TTGTGTGTCTTT--TT---TG------CATT--TAC-------------------------T----GTAGCC-------CTGAGAGA-------CACGAGCAAA------------------------CGTA-----------------------------------GTTCTTTT---ATTATTATTCAGTAATT----------------------------------------------------CATAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAGTAATT----------------------------------------------------CATAAAA1920.501100000
................................................................................................................................................................................................................................................................................................................................................................................T---G-------------------------TGTACGTG------------------------------------------------T------GT--GTGT----T.............................................................................................................................................................................................................................................................18170.061100000
droGri2
CGAAA-AGCTCCGTTTCTCACGT--CTGTCTTGCGTTAAGAGTAC--AA------------AAAATT---------------G---------------CGATTCAGT-TAAGTTCAGTTCATTTGCAATTGTTTAAAAAGTT--TAAACAACAA----------------TTT---------------------------------------TATCGGTCGCGAAAAGTGCGAAAA--AAAAGTAAC-------------------------------------------------------------------------AAAA-----------------AAAAATACC----TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:32 AM