ID:

dsi_26197

 Coordinate:

3r:17714640-17714699 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.1

Flybase annnotation

five_prime_UTR [3r_17714590_17714608_+]; CDS [3r_17714609_17714639_+]; exon [3r_17714590_17714639_+]; exon [3r_17714700_17714980_+]; exon [3r_17714700_17714980_+]; exon [3r_17714590_17714639_+]; CDS [3r_17714700_17714980_+]; five_prime_UTR [3r_17714590_17714639_+]; five_prime_UTR [3r_17714700_17714980_+]; intron [3r_17714640_17714699_+]; intron [3r_17714640_17714699_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
ATGTGACAGCTGTGGGCGAATGAAAATAATGATAAGCCAAGTCGGACGAGGTGGAGTTTTTGAAAAGCAGTGGAAAATCGTTAATAACCAGGTGCTATCAACTCTTCCAGAGCTCTACAAGGTGCCGCTTCGCATTCTAGACCATCGCGTGTTCGTAAAC
**************************************************.(((((...((((..((((.(((..............)))..)))).))))...))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
...................................GCCAAGTCGGACGAGGTG........................................................................................................... 18 0 1 3.00 3 0 2 0 0 0 0 1 0 0 0 0
...............................ATAAGCCAAGTCGGACGA............................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................ATGATAAGCCAAGTCGGACGAGG............................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................AGGTGCTATCAACTCTTCCAGT................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
........................AATAATGATAAGCCAAGTCGGACGA............................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................CTACAAGGTGCCGCTTCG............................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................GAAAATAATGATAAGCCAAGTCGGACGA............................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................AAAAGCCAAGCCGGACGAGG............................................................................................................. 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..............................GATAAGCCAAGTCGGACGAGA............................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................GCCAAGTCGGACGAGGTGGAGC....................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................GAGCTCTACAAGGTGCCGCTT.............................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................AATGATAAGCCAAGTCGGACG................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................GCCAAGTCGGACGAGGTGGAGT....................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................AACTCTTCTAGAGCTCT............................................ 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................ATAAGCCAAGTCGGACGAGAGC........................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................GATAAGCCAAGTCGGACGAGG............................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................CATTCTAGACCATCGCGAGTTCGTAA.. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.................................AAGCCAAGTCGGACGAGGTT........................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................TCGTTAATAACCAGGTGCT................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................GTGGAGTTTTTGAAAAGCAGTGGAAAA................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................ATAAGCCAAGTCGGACGAGGT............................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................TGAAAATAATGATAAGCCAAGTCGGACGAGA............................................................................................................. 31 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................AATAATGATAAGCCAAGTCGG................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................AAGCCAAGTCGGACGAGGTTTT......................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....GACAGCTGTGGGCGAATG.......................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ACAAGGTGCCGCTTCGCATTC....................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
............................ATGATAAGCCAAGTCGGA.................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................AGGTGGAGTTTTTGAAAAGTAGTGG....................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................GTGGAAAATCGTTAATAACCAGGT................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................CAAGTCGGACGAGGTGGAG........................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................CGGATTGGGTGGAGTTTTTGA................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.....ACAGCTGTGGGCGAAT........................................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................AAGCCAAGTCGGACGAGA............................................................................................................. 18 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
................................TAAGGGAAGTCGGACGA............................................................................................................... 17 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
......................................AAGCCGGACAAGGTGGCGTTT..................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
............................................GACGAGGTGGAGGTT..................................................................................................... 15 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CACCGCGTGTTGGTA... 15 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACACTGTCGACACCCGCTTACTTTTATTACTATTCGGTTCAGCCTGCTCCACCTCAAAAACTTTTCGTCACCTTTTAGCAATTATTGGTCCACGATAGTTGAGAAGGTCTCGAGATGTTCCACGGCGAAGCGTAAGATCTGGTAGCGCACAAGCATTTG
**************************************************.(((((...((((..((((.(((..............)))..)))).))))...))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
......................................................................................................................TTCCACGGCGAAGCGTAAAAT..................... 21 1 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................TCCACGGCGAAGCGTAAGATC.................... 21 0 1 2.00 2 0 1 1 0 0 0
........................................................................................................................................AATCTGGTAGCGCACAAGCAT... 21 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................TTCTGGTAGCGCACAAGCAT... 20 1 1 1.00 1 1 0 0 0 0 0
......................................TTCAGCCTGCTCCACCTCAA...................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
................................ATTCGGTTCAGCCTGCTCCAC........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................TTTCAGCCTGCTCCACCTCAA...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................AGATGTTCCACGGCGAAGC............................ 19 0 1 1.00 1 1 0 0 0 0 0
.................................TTCGGTTCAGCCTGCTCCACC.......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................CGAAGTTCTCGAGATCTTCCA..................................... 21 3 1 1.00 1 0 0 0 1 0 0
...........................................................................................CACGATGGTTGAAAAGGTCT................................................. 20 2 2 0.50 1 1 0 0 0 0 0
..................TTACTTTTATTACTA............................................................................................................................... 15 0 5 0.20 1 0 0 0 0 1 0
....................................................TCTCAAAAACATTTCGGCAC........................................................................................ 20 3 7 0.14 1 0 1 0 0 0 0
..............................................................................................................TCGAGGTGCTCCATGGCGA............................... 19 3 11 0.09 1 0 0 0 0 0 1
................GCTTGCTTTTATGACCATTC............................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 1

Generated: 04/24/2015 at 02:59 AM