ID:dsi_26160 |
Coordinate:3r:4456305-4456404 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -8.0 | -7.7 | -7.57 |
 |
 |
 |
three_prime_UTR [3r_4456440_4456675_+]; CDS [3r_4456405_4456439_+]; exon [3r_4456125_4456304_+]; CDS [3r_4456125_4456304_+]; exon [3r_4456405_4456675_+]; intron [3r_4456305_4456404_+]
No Repeatable elements found
| ##################################################----------------------------------------------------------------------------------------------------################################################## CTATCGCAATCTGTGCGTGATGAAGACGGAAAATTGTCTCCAGAATGCAAGTAAGTGTAGATGATTTAACCCACATTACTACCATCAAATATTATTACAATTATCTACAAATGATTATTAATTAAAACCCTTTCTCGTGCTCTTCCTTAGACTTTCAAAAGATCAGCGACAAGGAGTGTCCGTAGAGCTATGGATCCATT **************************************************.....(((((((((((................................))))))))))).........................................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
M025 embryo |
GSM343915 embryo |
M023 head |
M024 male body |
SRR902009 testis |
M053 female body |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................GTGATGAAGACGGAAAATTGT................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................AGTGTAGATGATTTA.................................................................................................................................... | 15 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................GTCGGTAGAGCAATGGAT..... | 18 | 2 | 9 | 1.00 | 9 | 0 | 0 | 0 | 4 | 4 | 0 | 1 | 0 |
| ............................................................................................................................................................AAAAGATCAGCGACAAGGAGT....................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................ATCTACAAACGATCATTAGT.............................................................................. | 20 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................TACAATTATCTAGTAAGGAT..................................................................................... | 20 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .....................................................................................................................................CTAGTGCTCTTCCTTCG.................................................. | 17 | 2 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|
GATAGCGTTAGACACGCACTACTTCTGCCTTTTAACAGAGGTCTTACGTTCATTCACATCTACTAAATTGGGTGTAATGATGGTAGTTTATAATAATGTTAATAGATGTTTACTAATAATTAATTTTGGGAAAGAGCACGAGAAGGAATCTGAAAGTTTTCTAGTCGCTGTTCCTCACAGGCATCTCGATACCTAGGTAA
**************************************************.....(((((((((((................................))))))))))).........................................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................CTGAAAGTTATCTAG.................................... | 15 | 1 | 10 | 12.20 | 122 | 65 | 56 | 0 | 1 | 0 |
| ......................................................................................................................................................TGAAAGTTTTGTAGTGGCTGAT............................ | 22 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................TGGGTGTAATGATGTTTTTTTA.............................................................................................................. | 22 | 3 | 3 | 0.67 | 2 | 2 | 0 | 0 | 0 | 0 |
| ...................................................................................................TAACAGATGTTTACCAATGATT............................................................................... | 22 | 3 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................................................................AAAGTTATCTAGTCG................................. | 15 | 1 | 16 | 0.13 | 2 | 1 | 1 | 0 | 0 | 0 |
| ....................................................................................................................TAATTGATTTTGGGAA.................................................................... | 16 | 1 | 10 | 0.10 | 1 | 0 | 0 | 1 | 0 | 0 |
| .............................TTCTAACCGAGGTCTTA.......................................................................................................................................................... | 17 | 2 | 16 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 |
| ...................................................................................................................................................................................GGAAGCTCGATACCTA..... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................TAATGATGTTAATAG............................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 |
Generated: 04/24/2015 at 08:16 AM