ID:

dsi_26141

 Coordinate:

3l:15963622-15963771 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_15963615_15963621_-]; CDS [3l_15963219_15963614_-]; exon [3l_15963219_15963621_-]; intron [3l_15963622_15966889_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAAAGTTGCGTGATGGAAGAAACCACAACAAAATGTTAAACAAAACAATGACCTATCAGGCTAGGCATAATATTAATGTTTTATGATCCCCAGTCCATATGGGAAATTAAAGGTTCTATTTATTCTTGGAAGTCTATTAAAACACCTGTAGGGTTCAGTAAAGGTTCAAAAAAATATTAATATGTAATCTATTTTTCAGATCCACCATGTCCGACGCAGCCGCAGCTAATGGAAGCCCCTCGCCAGCTC
**************************************************...((...............(((((((((((((.(((.((.....((.((((((...((((((((((((........))))).))).))))....)))))).)).........)).))).)))).)))))))))..............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 M053
female body
 M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 O002
Head
 SRR618934
dsim w501 ovaries
.......................................................................................................................................................................................................GATCCACCATGTCCGACGCAGCC............................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................CCACAGATCCACCATGTCCGACGCAGC............................. 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................TTTATGATCCCGAGTTCCTA...................................................................................................................................................... 20 3 3 0.67 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTTCATTAAAGGTTCAAAAAA............................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................TTTTATGATCCCCAGGCC......................................................................................................................................................... 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................TATTTATGATTGGAAGTC................................................................................................................... 18 2 10 0.40 4 0 0 0 4 0 0 0 0 0
...................................................................................................ATGGGAAAATAGAGGTTCT.................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0
....................................................................................................TGGGAAAATAGAGGTTCTA................................................................................................................................... 19 2 6 0.17 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................GTCTTGGAAGTCTATGAAC............................................................................................................ 19 3 15 0.13 2 0 0 0 0 0 0 2 0 0
..........................................................................................................................................................TTCGTTAAAGGTTCAAAAA............................................................................. 19 2 8 0.13 1 1 0 0 0 0 0 0 0 0
..........................................AAAACAATGTCCTGTCAG.............................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................TTTCGTTAAAGGTTCAAAAAAA........................................................................... 22 3 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................AGGTTCAAAAAAATGTTGAT.................................................................... 20 2 8 0.13 1 0 0 0 0 0 0 0 0 1
....................................................................................................TGGGAAATTAGAGGTTCTAGC................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................ATGTCAGACGCAGCC............................ 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................TTCGTTAAAGGTTCAAAAAAAA.......................................................................... 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0
..................................................................................TATGATCCCGAGTTCCTA...................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTCACTGACGGTTCAAAAAAATA......................................................................... 23 3 12 0.08 1 0 0 0 0 0 1 0 0 0
......................................................................................................GGGAATTAGAGGTTCTATC................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 1 0 0 0 0
......................................................................................................GGGAAATAAAGGTTCTATC................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CTTTTCAACGCACTACCTTCTTTGGTGTTGTTTTACAATTTGTTTTGTTACTGGATAGTCCGATCCGTATTATAATTACAAAATACTAGGGGTCAGGTATACCCTTTAATTTCCAAGATAAATAAGAACCTTCAGATAATTTTGTGGACATCCCAAGTCATTTCCAAGTTTTTTTATAATTATACATTAGATAAAAAGTCTAGGTGGTACAGGCTGCGTCGGCGTCGATTACCTTCGGGGAGCGGTCGAG
**************************************************...((...............(((((((((((((.(((.((.....((.((((((...((((((((((((........))))).))).))))....)))))).)).........)).))).)))).)))))))))..............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
.................TTGTTCGGTGTTGGTTTACAAT................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................CGATGTCATTTCCAAGT................................................................................. 17 2 16 0.63 10 0 8 0 1 0 1 0
.......................................................................................CGGGGTCTGGTATACCCT................................................................................................................................................. 18 2 2 0.50 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................AAAGCCTAGGGGGTACAGGTT................................... 21 3 4 0.25 1 0 0 0 1 0 0 0
........................................................................................................................................................CCATATCATTTCCAAGT................................................................................. 17 2 4 0.25 1 0 0 0 1 0 0 0
........................................................................................................................................................CGAACTCATTGCCAAGTTT............................................................................... 19 3 15 0.13 2 0 0 0 0 2 0 0
..........................................................................................GGTCTGGTATACCCT................................................................................................................................................. 15 1 10 0.10 1 0 1 0 0 0 0 0
...........................................................................................................................................................CGTCATTTCCAAGTAT............................................................................... 16 2 20 0.10 2 0 2 0 0 0 0 0
..........................................................................................................................................................ACGTCATTTCCAAGTAT............................................................................... 17 2 11 0.09 1 0 1 0 0 0 0 0
........................................................................................................................................................CGACGTCATTTCCAAGTAT............................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0
.........................................................................................GCGTCTGGTATACCCT................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................AGTCTAAGGGGAACAGGCT................................... 19 3 20 0.05 1 0 0 0 0 1 0 0
............................................................................................................................................................GTCATTTCCAAGTACT.............................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0
........................................................................................CGGGTGAGGTATACCCT................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................AAGTCTAAGGGGAACAGGC.................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/23/2015 at 11:42 PM