dsi_26126

AACCTGTCGCCGCTCCACTCGCAGTCGGAGTCAGCTGCTCCAATCGCCAGGTTAACTTGACTTGAAGATCGTTGGCACTGGAGGCCCTTATCCACGTGATCTTAATCAGTTTGTTGTATGTTTTGTTTCAATTTGTGCGTCACGCAGTCGGGATTGTCGACGGTTTGGCCTTTTTGAAGATGGAGCAAGGTGATCGG ************************************************..((((..((((..(((((((.(((....((....))....)))..)))))))....)))).))))...................((((...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	SRR618934 dsim w501 ovaries	GSM343915 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M023 head
...........................................................................................................................................................................TTTTGAAGATCGAGCTAGGTGGT...	23	3	1	2.00	2	0	0	1	0	0	1	0	0	0
..........................................................GACTTGAAGATCGTTGGCACTGGG...................................................................................................................	24	1	1	2.00	2	1	1	0	0	0	0	0	0	0
..................................................................................................................................ATTTGTGCGTCACGCAGC.................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0	0
..................................................................GATCGTTGGCACTGGAGG.................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0
..............................................................TGAAGATCGTTGGCACTGGA...................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................................................GACTTGAAGATCGTTGGCA........................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................TGAAGATCGTTGGCACTGGAGG.................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................ACTTGACTTGAAGATCGT.............................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.................................................GGTTAGCTTGACTTGAAGATCGTTGGC.........................................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CGACGGTTTGGCCTTTTTGAAGAT................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.....................................CTCCAATCGCCAGGTTAACTTGAC........................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..........................................................GACTTGAAGATCGTTGGCACTGG....................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.................................................................................................GATCTGAATCAGTTTGTTGT................................................................................	20	1	1	1.00	1	0	0	0	0	1	0	0	0	0
..............................................................TGAAGATCGTTGGCACTGGAGGCCC..............................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................TGAAGATCGTTGGCACTGA....................................................................................................................	19	1	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................GGAGTCAGCTGCTCCAATCGCCAGG..................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................................................GACTTGAAGATCGTTGGCACTGGA...................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTTGAAGATCGAGCTAGG.......	19	2	2	0.50	1	0	0	1	0	0	0	0	0	0
.............................................................................CTGGAGGCCCGAACCCACGT....................................................................................................	20	3	5	0.40	2	0	0	0	0	0	0	2	0	0
............................................................................ACTGGAGGCCCGAACCCACGT....................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................TGAAGTTGGAACAAGGT......	17	2	16	0.19	3	0	0	0	0	0	0	0	3	0
..........................................................................GCACTGGAGGACCTAACCC........................................................................................................	19	3	20	0.15	3	2	0	0	0	0	0	0	0	1
......................................................................................................AAATCAGTTTGTTGTA...............................................................................	16	1	9	0.11	1	0	0	1	0	0	0	0	0	0
.......................................................................TTAGCACTGGAGGCCTTTT...........................................................................................................	19	3	18	0.11	2	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................GGTTGTCGACGGTTGAGCC...........................	19	3	11	0.09	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTTTTGAAGCTGGTGCAAGT.......	20	3	20	0.05	1	0	0	1	0	0	0	0	0	0
........CCCGCTCCACTCGCA..............................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1	0
....................................................................................................................TATGTGATGTTTCCATTTGT.............................................................	20	3	20	0.05	1	0	0	0	1	0	0	0	0	0
...............................................................................................................TGTTGTATGATTTGT.......................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1	0	0
..........................................................................................................CAGTGTGTTGTATGTTC..........................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0	0

TTGGACAGCGGCGAGGTGAGCGTCAGCCTCAGTCGACGAGGTTAGCGGTCCAATTGAACTGAACTTCTAGCAACCGTGACCTCCGGGAATAGGTGCACTAGAATTAGTCAAACAACATACAAAACAAAGTTAAACACGCAGTGCGTCAGCCCTAACAGCTGCCAAACCGGAAAAACTTCTACCTCGTTCCACTAGCC ************************************************..((((..((((..(((((((.(((....((....))....)))..)))))))....)))).))))...................((((...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
................................TCGACGAGGTTAGCGG.....................................................................................................................................................	16	0	2	0.50	1	0	1	0	0	0	0
...................................................................................................AGAGTTAGTTAAACAACATACAT...........................................................................	23	3	2	0.50	1	1	0	0	0	0	0
...GACAACGGCCAGGTGAGCGTCAGGC.........................................................................................................................................................................	25	3	4	0.25	1	0	0	0	1	0	0
.......................CAGCCAAAGTCGACGAGCTTA.........................................................................................................................................................	21	3	5	0.20	1	0	0	1	0	0	0
...GACAGCGGCAAGGTG...................................................................................................................................................................................	15	1	13	0.15	2	0	2	0	0	0	0
.........GGCGAAGTGAGCGTCA............................................................................................................................................................................	16	1	7	0.14	1	1	0	0	0	0	0
TTGGGCAACGGCGAGATGA..................................................................................................................................................................................	19	3	20	0.10	2	0	0	2	0	0	0
............................................................................................GTGCACGAGAATCAGTGAA......................................................................................	19	3	12	0.08	1	0	0	0	0	1	0
............................................................GAACTTCTAGCAACCTG........................................................................................................................	17	2	15	0.07	1	1	0	0	0	0	0
....................................................................................................................................AAGACGCAGTGCCTCAG................................................	17	2	15	0.07	1	0	0	0	0	0	1
........CGGCGAAGTGAGCGGCA............................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0
............................TCAGTCGACGAGATTG.........................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0
...........................................................................................GGTGCACGAGAATCAGTG........................................................................................	18	3	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:4357837-4358033 +	dsi_26126	AACCT-G--------TCGCCGCT--CCACTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATCGCCAGGTTAACTTGACTTGAAGATCGTTGGCAC-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATCTTAATCAGTTT--GTTGTAT-------------------------GTTTTGTTTCAATTTGTGCGTCACGCAGTCGGGATTGTCGACGG---------TTTGGCCTTT-TTGAAGATGG------A-------GCAA------GGTG--ATCGG
droSec2	scaffold_1:1173395-1173591 +		AACCT-G--------TCGCCGCT--CCACTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATAGCCAGGTTAACTTGACTTGAAGATCGTTGGCAC-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATCTTAATCAGTTT--GTTGTAT-------------------------GTTTTGTTTCAATTTGTGCGTCAGGCAGTCGGGATTGTCTACGG---------TTTGGCCTTT-TTGAAGATGG------A-------GCAA------GGTG--ATCGG
dm3	chr2R:3516283-3516488 +		AACCT-G--------TCGCCGCT--CCACTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATCGCCAAGTTAACTTAACTTGAAGATCGTTGGCAC-----GGG--------GGGCCCTTA--------------------------------------TCCACGTGATCCTAATCAGTTT--GTTGTAT-------------------------GTTTTGTTTCAATTTGTGCGTCATGCAGTCGGGATTGTTAACGCTGTCGACGGTTTGGGCTTT-TTGAAGATGG------A-------GCAA------GGTG--ATCGG
droEre2	scaffold_4929:19087585-19087794 -		AACCT-G--------TCGGCGCT--CC------------------------------------------AGTCGGAGTCAGCTGCTCCATTCGTTAAGTTAACTTAACTTGAAGATCGTTGGCAT-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATCTTAATCAGTTC-TGTTGTAT----------AC------TTGCCGCGATTTGTTTCAATTTGTGCGTCATGCATTCCGGATTGTTTTCGGTGTCGACGGTTTGGGCTTT-TTGAAGATGG------A-------GTAA------GGTG--ATCGG
droYak3	2L:16188482-16188699 +		AACCT-G--------TCGCCGCT--CCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCATTCGTTAAGTTAA-----CCTGAAGATCGTTGGCAC-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATTTTAATCAGCTT-TGTTGTATGTTCCGGCGAAT---ATATAGCCAAGACTTGTTTCAATTTGTGCGTCATGCATTCGGGATTGTTTTCGGTGT-------TTGGGTTTTTGTAAAGATGG------A-------GTAA------GGTG--ATCGG
droEug1	scf7180000409672:5532152-5532361 +		AACCT-G--------TCGCCGTT--CCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAGTCGTTGAGTTAA-----CCCGTAGATCGTTGCCACCGGATCGG--------AGGCCCTTA--------------------------------------GCCGCGTGATCCTAATCAGCTT-TGTT----------ACGAGT---ATATAGCCGCGATTTGTTTCAATTTCTGCGTCATGCAAGCGGGTTTGTTTTCGCTG---------CGGGTTAT-TTGAAGATGG------A-------GTGA------GGTG--GCCGG
droBia1	scf7180000302292:2617533-2617743 -		AACCT-G--------TCGCCGCT--TCAGTC------------------CC------------------AGTCGGAGTCAGCTGCTCCGTTCGCCAGGTTAA-----C-CGAAGATCTCCGGCG---CACTGG--------AGGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTT----------ACGCTACGAATATAGCCGCGATTTGTTTCAATTACTGCGTCAGGCATTCGGGTTTGTTCTCGG--------------GCTTACTCGAGGATGG------A-------GTGAGTTCCAGGTG--ATCGG
droTak1	scf7180000416016:122119-122321 +		AACCT-G--------TCGCCGCT--TCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATCGTTGAGTTAA-----C-TGAAGATCGTCGTTA----ACCGG--------AGGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTT----------ACGAGT---ATATAGCCGCGATTTGTTTCAATTTCTGCGTCATGCATTCGGGTTTATTTTCG--------------GGTTTT-TTGAATACGG------A-------GTGAGGT---GGTG--ATCGG
droEle1	scf7180000491347:368296-368509 +		AACCT-G--------TCGCCGCT--CCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAGTCGTTGAGTTAA-----CGCGAAGATCGTTGGCAC-----TGG--------AAGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTG----------TCGAGC---AAATAGCCGTGATTTGTTTCAATTTCTGCGTCATGCAGTCGGGGCTGTTTTCGGTGTCGTCGGTCTGGGTTTT-CTGAAGATGG------A-------TTGA------GGTG--ATCGG
droRho1	scf7180000780108:110050-110269 +		AACCT-G--------TCGCCTCT--CCAGTCACA------------TTCGC------------------AGTCGGAGTCAGCTGCTCCTATCGTTAAGTTAA-----CCTGAAGATCGTTGGCAC-----TGA--------AAGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTG----------TCGAGT---AAATAGCCGTGATTTGTTTCAATTTCTGCGTCATGCATTCGGGTTTGTTTTCGGTGTCGTCGGCTTGGGTTTT-CTGAGGATGG------A-------GTGA------GGTG--ATCGG
droFic1	scf7180000453948:274892-275091 +		AACCT-G--------TC--------------------------------TC------------------AGTCGGAGTCAGCTGCTCCAATCGCTCAGTTAG-----CTGGAAGATCGTTGCCAA-----C-G--------AGGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTT--GGTT----------ACGAGC---ATATAGCCGCGATTTGTTTCAATTTCTGCGTCATGCACTCGGGATTGTTTTCGGTGTCGTCGGCTTTGGTTTT-TTGAAGATGG------A-------GTGA------GGTG--ACCGG
droKik1	scf7180000302476:3342981-3343195 +		AACCT-G--------TCGCCGCTCTCCAGTCGCTATCGC---------CGC------------------AGTCGGAGTCAGCTGCTCCAATCGCCAA----------CTTGAAGATCGTCG---------TGGAGA-----AGGCCCTTT---TAGCC-----------CCA----------------GACCCGTGATCTTAATCAGTTTTTGTG----------GCGGGT---AAATAGCCGCGATTTATTTCAATTTCTGCCTC---------GGTTTGTCGTCGG---------TAT---TTTT-TTGAAGATCGC-----GGCCGCGACGAG------GGTG--ATCGG
droAna3	scaffold_13266:10029947-10030172 +		AACCT-G--------TCGCCGCT--CCAGTCGCA------------TTCGC------------------AGTCGGAGTCAACTGCTCCAATCGTTAACTT--------------------GGCAG-----TGGAGGCTAAACAGCCCTTA---CAGCTATAG------ACGC----------TATATAGCCTCGTGATCTTAATCAGTTT-TGTT----------ACGAGT---GAACAGCCGCGAATTGTTTCAATTTCTGCGTCATGCGTTCGGGATTGTTGTCGT---CTTCGGTGTGAGA----TTAAAGAGTT----GGG-------GC--------GGTG--GGTAG
droBip1	scf7180000396759:1745651-1745888 +		AACCT-G--------TCGCCGCT--CC------------------------------------------AGTCGGAGTTAACTGCTCCAATCGTTAACTTGG-----CCC-----------ACAG-----TGGAGGCTACACAGCCCTTA---CAGCTATAGCTATAGCCGCTATACTTGGCTATATAGCCTCGTGATCTTAATCAGTTT-TGTT----------ACGAGT---GAACAGCCGCGAATTGTTTCAATTTCTGCGTCATGCGTTCGGGATTGTTGTCGTCGTCGTCGGCTTGAGTTTT-GAGGAGTTGG------G-------GC--------GGTG--ATCGG
dp5	3:12235352-12235595 -		AACCT-G--------TCGCCGCT--CCAGTCGCAGTCGCAGTCCCAGTCCCAGTCGCATTCGCATTCCCAGTCGGAGTC---------AATCG-----TTAA-----CTTGAAGATCGTTTCGAG-----TGGAGG-----GAGCCCTTAGTTCAGTC-----------CGC----------------GCCTCGTGATTTTAATCTGTTT-GGTT----------TGGTTTTTGTCGCAGTCG-GAATTGTTTCAAATATAGCGTCATGCTTTTGGGATTGTTGTCGTTTTC---GGGCTG-----------AGATTGTGCTGG-G---CGG------------CGGGATTGA
droPer2	scaffold_44:419118-419361 -		AACCT-G--------TCGCCGCT--CCAGTCGCAGTCGCAGTCCCAGTCCCAGTCGCATTCGCATTCCCAGTCGGAGTC---------CATCG-----TTAA-----CTTGAAGATCGTTTCGAG-----TGGAGG-----GAGCCCTTAGTTCAGTC-----------CGC----------------GCCTCGTGATTTTAATCTGTTT-GGTT----------TGGTTTTTGTCGCAGTCG-GAATTGTTTCAAATATAGCGTCATGCTTTTGGGATTGTTGTCGTTTTC---GGGCTG-----------AGATTGTGCTGG-G---CGG------------CGGGATTGA
droWil2	scf2_1100000004382:186282-186371 -		AAGTCAGATGCAGAGAGACCCCT--GCTATCGCAGTGGCAG---CAGTCCC------------------AGTTACAATCTTCAGCTCCATTCGTTAACTTGG-----CT--AAGATCGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AACCT-G--------TCGCCGCT--CCACTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATCGCCAGGTTAACTTGACTTGAAGATCGTTGGCAC-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATCTTAATCAGTTT--GTTGTAT-------------------------GTTTTGTTTCAATTTGTGCGTCACGCAGTCGGGATTGTCGACGG---------TTTGGCCTTT-TTGAAGATGG------A-------GCAA------GGTG--ATCGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................GACTTGAAGATCGTTGGCAC-----TGG--------G...................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATTTGTGCGTCACGCAGC................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GATCGTTGGCAC-----TGG--------AGG.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................TGAAGATCGTTGGCAC-----TGG--------A...................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GACTTGAAGATCGTTGGCA.....................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TGAAGATCGTTGGCAC-----TGG--------AGG.................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................ACTTGACTTGAAGATCGT..........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CGACGG---------TTTGGCCTTT-TTGAAGAT.....................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CTCCAATCGCCAGGTTAACTTGAC.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GACTTGAAGATCGTTGGCAC-----TGG--------....................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TGAAGATCGTTGGCAC-----TGG--------AGGCCC..............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TGAAGATCGTTGGCAC-----TGA--------....................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GGAGTCAGCTGCTCCAATCGCCAGG...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GACTTGAAGATCGTTGGCAC-----TGG--------A...................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AACCT-G--------TCGCCGCT--CCACTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATAGCCAGGTTAACTTGACTTGAAGATCGTTGGCAC-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATCTTAATCAGTTT--GTTGTAT-------------------------GTTTTGTTTCAATTTGTGCGTCAGGCAGTCGGGATTGTCTACGG---------TTTGGCCTTT-TTGAAGATGG------A-------GCAA------GGTG--ATCGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................................................................CTACGG---------TTTGGCCTTT-TTGAAGATGG------.............................	26	1	1.00	1	1	0	0	0
..................................................................................................................ATCGTTGGCAC-----TGG--------AGGCCCT.............................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.............................................................................................................TGAAGATCGTTGGCAC-----TGG--------AGGCC...............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
................................................................................................GGTTAACTTGACTTGAAGATC............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
....................................................................................................AACTTGACTTGAAGATCGTTGGCAC-----T..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
.....................................................................................................ACTTGACTTGAAGATCGTTGGCAC-----TG.............................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0

dm3

AACCT-G--------TCGCCGCT--CCACTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATCGCCAAGTTAACTTAACTTGAAGATCGTTGGCAC-----GGG--------GGGCCCTTA--------------------------------------TCCACGTGATCCTAATCAGTTT--GTTGTAT-------------------------GTTTTGTTTCAATTTGTGCGTCATGCAGTCGGGATTGTTAACGCTGTCGACGGTTTGGGCTTT-TTGAAGATGG------A-------GCAA------GGTG--ATCGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................TTAACGCTGTCGACGGTT......................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GCTGTCGACGGTTTGGGC.................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TT-TTGAAGATGG------A-------GCAA------G..........	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GTCATGCAGTCGGGATTG........................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TGTTAACGCTGTCGACGGTTTGGGC.................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................CAATTTGTGCGTCATGCAGTCGGG............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................GATTGTTAACGCTGTCGACGGG.......................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GTTGTAT-------------------------GTTTTGTTTCA..................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TTGGGCTTT-TTGAAGATGG------A-------GCAA------GG.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AACGCTGTCGACGGTTTGGGCT................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AACTTGAAGATCGTTGGCAT-----C..............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ACGCTGTCGACGGTTTGGGT.................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TTTGGGCTTT-TTGAAGACT....................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AACCT-G--------TCGGCGCT--CC------------------------------------------AGTCGGAGTCAGCTGCTCCATTCGTTAAGTTAACTTAACTTGAAGATCGTTGGCAT-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATCTTAATCAGTTC-TGTTGTAT----------AC------TTGCCGCGATTTGTTTCAATTTGTGCGTCATGCATTCCGGATTGTTTTCGGTGTCGACGGTTTGGGCTTT-TTGAAGATGG------A-------GTAA------GGTG--ATCGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................CATGCATTCCGGATTGTTTTCGGT................................................................	24	1	5.00	5	0	0	0	0	5	0	0
...........................................................................................................................AT-----TGG--------AGGCCCTTA--------------------------------------TCCACGT..............................................................................................................................................................	21	1	3.00	3	0	0	0	0	3	0	0
.................................................................................................GTTAACTTAACTTGAAGATCGTTGGC......................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................GTAT----------AC------TTGCCGCGATTTGTTT....................................................................................................	22	1	2.00	2	1	0	0	0	0	1	0
............................................................................GTCAGCTGCTCCATTCGT...................................................................................................................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0	0
...................................................................................................................................................................................................GATCTTAATCAGTTC-TGTT..........................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATTTGTGCGTCATGCATTCCGGATTG........................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................AACTTGAAGATCGTTGGCAT-----TGG--------A...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................TCGGTGTCGACGGTTTGGGCTTT-.............................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................GTTTGGGCTTT-TTGAAGATG....................................	20	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................ATGCATTCCGGATTGTTTTCGGT................................................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................TTGAAGATGG------A-------GTAA------GGTG--ATC..	22	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................TTAATCAGTTC-TGTTGTAT----------............................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................ACTTAACTTGAAGATCGTTGGCAT-----TGG--------....................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1
...................................................................................................TAACTTAACTTGAAGATCGTTGG.......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................AACTTAACTTGAAGATCGTTGGCA.....................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................GGTGTCGACGGTTTGGGCTT...............................................	20	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................CTTAATCAGTTC-TGTTGTAT----------AC------T...................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................ATCGTTGGCAT-----TGG--------AGGCCCTTA--------------------------------------TCCAC................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TTTCGGTGTCGACGGTTTGGG..................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................GTTC-TGTTGTAT----------AC------TTGCCGC.............................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................CTTGAAGATCGTTGGCAT-----TGG--------AGGCC...............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................CGACGGTTTGGGCTTT-TTGAAGATGG------A-------.....................	27	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................AACTTAACTTGAAGATCGTTGGC......................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
..........................C------------------------------------------AGTCGGAGTCAGCTGCTCCATTCGT...................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................GTCATGCATTCCGGATTGTTTTC...................................................................	23	1	1.00	1	0	1	0	0	0	0	0
AACCT-G--------TCGGCGCT--CC------------------------------------------AGTCGGA.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................ATCGTTGGCAT-----TGG--------AGGCCCT.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................CATGCATTCCGGATTGTTTTC...................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................TTAATCAGTTC-TGTTGTAT----------AC------TTGCCGC.............................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................AT----------AC------TTGCCGCGATTTGTTTCA..................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................ATCGTTGGCAT-----TGG--------AGGCCCTC............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTT-TTGAAGATGG------A-------GTAA------GGTG--ATCG.	26	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................C-TGTTGTAT----------AC------TTGCCGC.............................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................GAAGATCGTTGGCAT-----TGG--------A...................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................GTTTCAATTTGTGCGTCATGC...................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................TAACTTAACTTGAAGATCGTTGGC......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0

droYak3

AACCT-G--------TCGCCGCT--CCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCATTCGTTAAGTTAA-----CCTGAAGATCGTTGGCAC-----TGG--------AGGCCCTTA--------------------------------------TCCACGTGATTTTAATCAGCTT-TGTTGTATGTTCCGGCGAAT---ATATAGCCAAGACTTGTTTCAATTTGTGCGTCATGCATTCGGGATTGTTTTCGGTGT-------TTGGGTTTTTGTAAAGATGG------A-------GTAA------GGTG--ATCGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................AA-----CCTGAAGATCGTTGGCAC-----TGG--------A...................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GAAT---ATATAGCCAAGACTTGT......................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................AA-----CCTGAAGATCGTTGGCAC-----T..............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................TTAAGTTAA-----CCTGAAGATCGTT.........................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................CAATTTGTGCGTCATGCATTCGGGA...........................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................GTTCCGGCGAAT---ATATAGCC...............................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GATTTTAATCAGCTT-TGTTGTAT......................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................GC------------------AGTCGGAGTCAGCTGCTCC.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................GTTTTTGTAAAGATGG------A-------GT...................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................GTTAA-----CCTGAAGATCGTTGGCAC-----TG.............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GTGCGTCATGCATTCGGGAT..........................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ACTTGTTTCAATTTGTGCGTCATG....................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................TGGCAC-----TGG--------AGGCCCTTA--------------------------------------TCC..................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGTAAAGATGG------A-------GTAA------GGT........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ATTGTTTTCGGTGT-------TTGGGT.................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AACCT-G--------TCGCCGTT--CCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAGTCGTTGAGTTAA-----CCCGTAGATCGTTGCCACCGGATCGG--------AGGCCCTTA--------------------------------------GCCGCGTGATCCTAATCAGCTT-TGTT----------ACGAGT---ATATAGCCGCGATTTGTTTCAATTTCTGCGTCATGCAAGCGGGTTTGTTTTCGCTG---------CGGGTTAT-TTGAAGATGG------A-------GTGA------GGTG--GCCGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACCT-G--------TCGCCGCT--TCAGTC------------------CC------------------AGTCGGAGTCAGCTGCTCCGTTCGCCAGGTTAA-----C-CGAAGATCTCCGGCG---CACTGG--------AGGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTT----------ACGCTACGAATATAGCCGCGATTTGTTTCAATTACTGCGTCAGGCATTCGGGTTTGTTCTCGG--------------GCTTACTCGAGGATGG------A-------GTGAGTTCCAGGTG--ATCGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACCT-G--------TCGCCGCT--TCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAATCGTTGAGTTAA-----C-TGAAGATCGTCGTTA----ACCGG--------AGGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTT----------ACGAGT---ATATAGCCGCGATTTGTTTCAATTTCTGCGTCATGCATTCGGGTTTATTTTCG--------------GGTTTT-TTGAATACGG------A-------GTGAGGT---GGTG--ATCGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACCT-G--------TCGCCGCT--CCAGTC------------------GC------------------AGTCGGAGTCAGCTGCTCCAGTCGTTGAGTTAA-----CGCGAAGATCGTTGGCAC-----TGG--------AAGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTG----------TCGAGC---AAATAGCCGTGATTTGTTTCAATTTCTGCGTCATGCAGTCGGGGCTGTTTTCGGTGTCGTCGGTCTGGGTTTT-CTGAAGATGG------A-------TTGA------GGTG--ATCGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACCT-G--------TCGCCTCT--CCAGTCACA------------TTCGC------------------AGTCGGAGTCAGCTGCTCCTATCGTTAAGTTAA-----CCTGAAGATCGTTGGCAC-----TGA--------AAGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTTT-TGTG----------TCGAGT---AAATAGCCGTGATTTGTTTCAATTTCTGCGTCATGCATTCGGGTTTGTTTTCGGTGTCGTCGGCTTGGGTTTT-CTGAGGATGG------A-------GTGA------GGTG--ATCGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACCT-G--------TC--------------------------------TC------------------AGTCGGAGTCAGCTGCTCCAATCGCTCAGTTAG-----CTGGAAGATCGTTGCCAA-----C-G--------AGGCCCTTA--------------------------------------GCCGCGTGATCTTAATCAGTT--GGTT----------ACGAGC---ATATAGCCGCGATTTGTTTCAATTTCTGCGTCATGCACTCGGGATTGTTTTCGGTGTCGTCGGCTTTGGTTTT-TTGAAGATGG------A-------GTGA------GGTG--ACCGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACCT-G--------TCGCCGCTCTCCAGTCGCTATCGC---------CGC------------------AGTCGGAGTCAGCTGCTCCAATCGCCAA----------CTTGAAGATCGTCG---------TGGAGA-----AGGCCCTTT---TAGCC-----------CCA----------------GACCCGTGATCTTAATCAGTTTTTGTG----------GCGGGT---AAATAGCCGCGATTTATTTCAATTTCTGCCTC---------GGTTTGTCGTCGG---------TAT---TTTT-TTGAAGATCGC-----GGCCGCGACGAG------GGTG--ATCGG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AACCT-G--------TCGCCGCT--CCAGTCGCA------------TTCGC------------------AGTCGGAGTCAACTGCTCCAATCGTTAACTT--------------------GGCAG-----TGGAGGCTAAACAGCCCTTA---CAGCTATAG------ACGC----------TATATAGCCTCGTGATCTTAATCAGTTT-TGTT----------ACGAGT---GAACAGCCGCGAATTGTTTCAATTTCTGCGTCATGCGTTCGGGATTGTTGTCGT---CTTCGGTGTGAGA----TTAAAGAGTT----GGG-------GC--------GGTG--GGTAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................GCCTCGTGATCTTAATCAGT.................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..CCT-G--------TCGCCGCT--CCAGTCGCA------------...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................ATAG------ACGC----------TATATAGCCTCGT..............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................GATTGTTGTCGT---CTTCGGTGT.....................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................AAACAGCCCTTA---CAGCTATAG------ACGC----------T..........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................CGC----------TATATAGCCTCGTGAT...........................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......G--------TCGCCGCT--CCAGTCGCA------------TTC................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................TCTGCGTCATGCGTTCGGGAT..........................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................C----------TATATAGCCTCGTGATCTTAAT.....................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................GTTCGGGATTGTTGTCGT---CTTCGGT.......................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................AATCGTTAACTT--------------------GGCAG-----TGGA...........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................TTTCTGCGTCATGCGTTCGG.............................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................GAGA----TTAAAGAGTT----GGG-------GC--------GGTG--.....	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GATTGTTGTCGT---CTTCGGTGTGAGA----.............................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................AAAGAGTT----GGG-------GC--------GGTG--GGT..	20	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................GTGAGA----TTAAAGAGTT----GG.............................	18	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................GAGA----TTAAAGAGTT----GGG-------GC--------GGT........	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GATTGTTGTCGT---CTTCGGTGTGA...................................................	23	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................GATTGTTGTCGT---CTTCGGC.......................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

AACCT-G--------TCGCCGCT--CC------------------------------------------AGTCGGAGTTAACTGCTCCAATCGTTAACTTGG-----CCC-----------ACAG-----TGGAGGCTACACAGCCCTTA---CAGCTATAGCTATAGCCGCTATACTTGGCTATATAGCCTCGTGATCTTAATCAGTTT-TGTT----------ACGAGT---GAACAGCCGCGAATTGTTTCAATTTCTGCGTCATGCGTTCGGGATTGTTGTCGTCGTCGTCGGCTTGAGTTTT-GAGGAGTTGG------G-------GC--------GGTG--ATCGG	Size	Hit Count	Total Norm	Total
No Reads

dp5

AACCT-G--------TCGCCGCT--CCAGTCGCAGTCGCAGTCCCAGTCCCAGTCGCATTCGCATTCCCAGTCGGAGTC---------AATCG-----TTAA-----CTTGAAGATCGTTTCGAG-----TGGAGG-----GAGCCCTTAGTTCAGTC-----------CGC----------------GCCTCGTGATTTTAATCTGTTT-GGTT----------TGGTTTTTGTCGCAGTCG-GAATTGTTTCAAATATAGCGTCATGCTTTTGGGATTGTTGTCGTTTTC---GGGCTG-----------AGATTGTGCTGG-G---CGG------------CGGGATTGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................GCATTCGCATTCCCAGTCGGA.....................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................ATTGTGCTGG-G---CGG------------CGGG.....	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................GATCGTTTCGAG-----TGGAGG-----GAGCCCT.............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................C---------AATCG-----TTAA-----CTTGAAGATCGTTTCGAG-----T..............................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................GTC---------AATCG-----TTAA-----CTTGAAGAT.............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................ATTCGCATTCCCAGTCGGA.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TG-----------AGATTGTGCTGG-G---CGG------------C........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................GATCGTTTCGAG-----TGGAGG-----GAGCC...............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................AAGATCGTTTCGAG-----TGGAGG-----GAGCC...............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GCCCTTAGTTCAGTC-----------CGC----------------GCCTCGTGAT...........................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TGTTT-GGTT----------TGGTTTTTGTC.....................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................ATCGTTTCGAG-----TGGAGG-----GA..................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................AAATATAGCGTCATGCTTTTGGG............................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GATTGTGCTGG-G---CGG------------CGGGAT...	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AATCTGTTT-GGTT----------TGGTTTTTGTCGCA..................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GCCCTTAGTTCAGTC-----------CGC----------------.....................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................CGCATTCGCATTCCCAGTCG.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................AATCG-----TTAA-----CTTGAAGATCGTTT........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................GCCCTTAGTTCAGTC-----------CGC----------------GC...................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................GATCGTTTCGAG-----TGGAGG-----G...................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................AGATCGTTTCGAG-----TGGAGG-----GA..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................TGTTT-GGTT----------TGGTTTTTGTCGCAGTC...............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................GTCGCAGTCCCAGTCCCAGTCGC........................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

AACCT-G--------TCGCCGCT--CCAGTCGCAGTCGCAGTCCCAGTCCCAGTCGCATTCGCATTCCCAGTCGGAGTC---------CATCG-----TTAA-----CTTGAAGATCGTTTCGAG-----TGGAGG-----GAGCCCTTAGTTCAGTC-----------CGC----------------GCCTCGTGATTTTAATCTGTTT-GGTT----------TGGTTTTTGTCGCAGTCG-GAATTGTTTCAAATATAGCGTCATGCTTTTGGGATTGTTGTCGTTTTC---GGGCTG-----------AGATTGTGCTGG-G---CGG------------CGGGATTGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................ATTCGCATTCCCAGTCGGA.....................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................TTTGTCGCAGTCG-GAATTGTTTCAAAT...............................................................................................	27	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GATTGTTGTCGTTTTC---GGGCT.....................................................	21	1	2.00	2	2	0	0	0	0	0
......................................................................GTCGGAGTC---------CATCG-----TTAA-----CTTGAA................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................AAGATCGTTTCGAG-----TGGAGG-----GA..................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................GATTGTTGTCGTTTTC---GGGCTG-----------AGATT....................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................AATCTGTTT-GGTT----------TGGTT...........................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
........................................................CATTCGCATTCCCAGTCGGA.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TTTC---GGGCTG-----------AGATTGTGCTGG-G---........................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................GGAGTC---------CATCG-----TTAA-----CTTG..................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................T----------TGGTTTTTGTCGCAGTCG-GAATT........................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................AGCCCTTAGTTCAGTC-----------CGC----------------GC...................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGGGATTGTTGTCGTTTTC---GGGCT.....................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................ATTTTAATCTGTTT-GGTT----------TGGG............................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................GTCGCAGTCG-GAATTGTTTC...................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................TTCCCAGTCGGAGTC---------CATC.....................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GTTTTC---GGGCTG-----------AGATTGTGCTGG-G---C.......................	26	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................G-----------AGATTGTGCTGG-G---CGG------------CGGGATT..	24	1	1.00	1	0	0	0	0	0	1
............................................................................................G-----TTAA-----CTTGAAGATCGTTTCGA.....................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................AGTC-----------CGC----------------GCCTCGTGATTTT........................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................GCGTCATGCTTTTGGGATTGTT......................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................GTCGCAGTCCCAGTCCCAGTC..........................................................................................................................................................................................................................................................................................................	21	12	0.08	1	1	0	0	0	0	0

droWil2

AAGTCAGATGCAGAGAGACCCCT--GCTATCGCAGTGGCAG---CAGTCCC------------------AGTTACAATCTTCAGCTCCATTCGTTAACTTGG-----CT--AAGATCGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................GCTCCATTCGTTAACTTG............................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0

dsi_26126

2r:4357887-4357983 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-15.8	-15.8	-15.6