ID:

dsi_26091

 Coordinate:

2r:10893413-10893619 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.9 -2.8 -2.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGTTGTTAATGTCCCAATCTACTCCCATTATGGGGATCTACTTTACTGCTGTCCCCATCTACGTTCCATTGCGAAGATCCTGCACAGGACAAACATGTAGCTAAATTCAAAAAGAACCTAGCAATATATGTACTAAATGTATATAAGGACAACTGCCTCCTCATCAATTTTTTGTATTATCACTAATAATCTCGTTCTTTCCAGATTCCCGCCACAATCACTGACAGACATGTGGCTAACGATGCTATCGATGA
*************************************************************************************************************************************************************************************************.....((((........))))...........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.......................................TGCTTCGGCAGGTGAGTTGTTA...................................................................................................................................................................................................................................................... 22 2 1 5.00 5 2 2 0 1 0 0 0
.......................................TGCTTCGGCAGGGGAGTTGTTA...................................................................................................................................................................................................................................................... 22 3 1 4.00 4 3 0 0 0 0 1 0
.......................................TGCTTCGGCAGGTGAGTTGTT....................................................................................................................................................................................................................................................... 21 2 1 4.00 4 0 2 0 2 0 0 0
.......................................TGCTTCGGCAGGTGAGTTGT........................................................................................................................................................................................................................................................ 20 2 1 2.00 2 0 0 0 0 2 0 0
.......................................TGCTTCGGCAGGTGAGTTGTTAC..................................................................................................................................................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................................TATCACTAATAATCTCGTTCTTTCCAG.................................................. 27 0 1 2.00 2 0 0 2 0 0 0 0
.......................................TGCTTCGGCAGGGGAGTTGTT....................................................................................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0 0 0
......................................TTGCTTCGGCAGGTGAGTTGTTA...................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GACAGACATGTGGCTAAC.............. 18 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................ATATAAGGACAACTGCCT................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
.......................................TGCTTCGGCAGGTGAGTTG......................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0
...........................................TCGGCAGGTGAGTTGTTACA.................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................TGTATATCAGGACAA...................................................................................................... 15 1 6 0.17 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................ACAAATGCCTCGTCATCA........................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 1
.......................................TGCTTCGGCAGGTGAGT........................................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 1 0 0

Anti-sense strand reads

ACCCGTAACAAGTTCCGGTACAGCGTGTACGAGACGTATCCGATGCCGTCCACTCAACAATTACAGGGTTAGATGAGGGTAATACCCCTAGATGAAATGACGACAGGGGTAGATGCAAGGTAACGCTTCTAGGACGTGTCCTGTTTGTACATCGATTTAAGTTTTTCTTGGATCGTTATATACATGATTTACATATATTCCTGTTGACGGAGGAGTAGTTAAAAAACATAATAGTGATTATTAGAGCAAGAAAGGTCTAAGGGCGGTGTTAGTGACTGTCTGTACACCGATTGCTACGATAGCTACT
**************************************************.....((((........))))...........................................************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M025
embryo
 M024
male body		 O002
Head
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 SRR1275487
Male larvae
........................................CGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 2 1 4010.00 4010 351 1984 940 54 566 88 0 7 20 0 0 0 0 0 0
..........................................AAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 20 2 1 743.00 743 392 67 20 196 39 13 6 2 4 4 0 0 0 0 0
............................................GCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 18 1 1 442.00 442 308 50 5 28 41 4 0 1 0 5 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 20 1 1 437.00 437 297 14 28 27 6 40 0 7 18 0 0 0 0 0 0
...........................................AGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 19 2 1 394.00 394 168 27 22 112 25 25 1 1 10 0 2 1 0 0 0
.......................................ACGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 23 3 1 353.00 353 135 61 46 54 18 21 2 5 11 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 23 3 1 345.00 345 27 95 97 0 41 39 8 28 4 3 0 2 1 0 0
.......................................ACGAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 21 2 1 232.00 232 135 2 5 27 0 18 12 10 16 1 4 1 0 1 0
.............................................CCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 18 2 3 231.00 693 28 328 57 28 198 6 25 9 0 12 0 2 0 0 0
.........................................GAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 21 2 1 229.00 229 108 4 3 81 1 26 1 0 2 0 2 1 0 0 0
.......................................ACGAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 20 2 1 217.00 217 135 0 1 27 0 8 28 4 7 2 4 0 1 0 0
..........................................AAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 18 1 1 193.00 193 112 0 0 56 0 5 2 10 3 3 2 0 0 0 0
........................................CGAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 21 1 1 155.00 155 27 22 3 54 6 32 2 2 7 0 0 0 0 0 0
............................................GCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 19 2 1 148.00 148 56 4 0 28 5 7 30 2 2 11 1 2 0 0 0
........................................CGAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 19 1 1 136.00 136 81 4 2 27 1 13 1 2 4 0 1 0 0 0 0
........................................CGAAGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 18 1 1 135.00 135 108 10 6 0 3 3 0 1 2 0 0 2 0 0 0
.........................................GAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 19 1 1 99.00 99 54 0 2 0 2 16 1 5 17 0 2 0 0 0 0
.........................................GAAGCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 22 3 1 98.00 98 0 8 4 0 3 21 25 20 3 5 1 3 2 3 0
.......................................ACGAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 22 2 1 86.00 86 54 3 0 0 0 7 7 3 7 0 1 1 2 1 0
..........................................AAGCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 21 3 4 70.25 281 112 7 1 112 6 7 20 5 1 5 1 2 1 1 0
.......................................ACGAAGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 19 2 3 68.33 205 135 7 1 27 0 3 15 5 10 1 1 0 0 0 0
.......................................ACGAAGCCGTCCACTCAA.......................................................................................................................................................................................................................................................... 18 2 8 67.88 543 378 9 3 81 2 7 15 30 2 4 12 0 0 0 0
.........................................GAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 20 1 1 62.00 62 27 1 1 0 0 20 2 5 6 0 0 0 0 0 0
.............................................CCGTCCACTCAACAATGTG................................................................................................................................................................................................................................................... 19 3 18 52.67 948 224 227 186 168 97 31 7 1 1 2 2 2 0 0 0
..........................................AAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 19 1 1 50.00 50 0 1 0 28 0 3 9 2 0 5 0 2 0 0 0
............................................GCCGGCCACTCAACAATG..................................................................................................................................................................................................................................................... 18 2 1 43.00 43 1 2 31 0 4 5 0 0 0 0 0 0 0 0 0
............................................GCCGTCCACTCAACAATGTG................................................................................................................................................................................................................................................... 20 3 7 42.57 298 280 1 2 0 0 12 2 0 0 0 1 0 0 0 0
...........................................AGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 16 1 1 41.00 41 0 0 0 0 0 0 27 1 0 7 2 4 0 0 0
..............................................CGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 16 1 1 37.00 37 0 0 0 0 0 0 8 12 0 13 0 4 0 0 0
.........................................GAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 18 1 1 34.00 34 27 0 0 0 0 5 0 0 2 0 0 0 0 0 0
..........................................AAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 17 1 1 30.00 30 0 0 0 0 0 0 21 5 0 3 1 0 0 0 0
...........................................AGCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 20 3 5 23.80 119 28 12 4 0 16 17 21 3 5 9 3 1 0 0 0
...........................................AGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 18 1 1 21.00 21 0 0 0 0 0 5 10 0 1 4 0 1 0 0 0
...........................................AGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 17 1 1 20.00 20 0 0 0 0 0 0 11 5 0 3 0 1 0 0 0
............................................GCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 17 0 1 14.00 14 0 0 0 0 0 0 3 1 0 5 1 4 0 0 0
.............................................CCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 17 1 1 12.00 12 0 0 0 0 0 0 3 2 0 5 0 2 0 0 0
...........................................GGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 19 2 2 11.00 22 0 7 6 0 9 0 0 0 0 0 0 0 0 0 0
......................................AACGAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 22 3 1 11.00 11 0 0 0 0 0 9 0 0 1 0 0 0 1 0 0
..........................................AAGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 16 1 6 10.00 60 0 0 0 0 0 0 40 7 0 9 0 4 0 0 0
.......................................GCGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 23 3 1 9.00 9 0 3 6 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 17 2 17 8.47 144 0 0 0 0 0 0 66 59 0 16 0 3 0 0 0
........................................GGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 7.00 7 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 15 0 1 7.00 7 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0
............................................GCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 15 0 1 7.00 7 0 0 0 0 0 0 0 2 0 0 3 2 0 0 0
........................................CGAATCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 7.00 7 0 6 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................GAAGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 17 1 1 6.00 6 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0
.......................................ACGAAGCCGTCCACTCA........................................................................................................................................................................................................................................................... 17 2 17 5.94 101 0 0 0 0 0 0 39 32 0 5 22 3 0 0 0
..........................................AAGCCGGCCACTCAACAATG..................................................................................................................................................................................................................................................... 20 3 4 5.25 21 1 1 10 0 7 0 0 0 0 1 0 0 0 1 0
........................................CGAAGCCGTCCACTCAA.......................................................................................................................................................................................................................................................... 17 1 2 5.00 10 0 0 0 0 0 0 0 7 0 1 2 0 0 0 0
........................................CGAAGCCGTCCACTCA........................................................................................................................................................................................................................................................... 16 1 3 4.67 14 0 0 0 0 0 0 1 5 0 1 7 0 0 0 0
...........................................AGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 15 1 14 4.57 64 0 0 0 0 0 0 52 4 0 6 0 2 0 0 0
............................................CCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 18 2 4 4.25 17 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 16 0 1 4.00 4 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAAAG..................................................................................................................................................................................................................................................... 22 3 1 4.00 4 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................AACGAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 21 3 3 4.00 12 0 0 0 0 0 6 0 0 2 1 2 1 0 0 0
.........................................GAAGCCGTCCACTCAA.......................................................................................................................................................................................................................................................... 16 1 4 3.75 15 0 0 0 0 0 0 0 12 0 0 2 1 0 0 0
..................................................................................................................................................GTATGTCGATTTTAGTTTTTCT........................................................................................................................................... 22 3 6 3.33 20 0 0 0 0 0 0 9 9 0 2 0 0 0 0 0
...........................................AGCCGGCCACTCAACAATG..................................................................................................................................................................................................................................................... 19 3 10 3.10 31 3 2 13 0 2 11 0 0 0 0 0 0 0 0 0
............................................GCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 16 0 1 3.00 3 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0
........................................CGAAGCCGTCCACTCAACGATG..................................................................................................................................................................................................................................................... 22 3 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAATTG.................................................................................................................................................................................................................................................... 23 2 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CCGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 23 2 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 21 3 2 2.50 5 0 0 2 0 1 1 0 0 0 0 0 1 0 0 0
............................................TCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 18 2 3 2.33 7 0 4 0 0 2 0 0 0 0 0 0 1 0 0 0
........................................CGAAGCCGTCCACTCAACAATGC.................................................................................................................................................................................................................................................... 23 3 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAAGG..................................................................................................................................................................................................................................................... 22 3 3 2.00 6 0 2 3 0 1 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAGTG..................................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTTCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCGCTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAATT..................................................................................................................................................................................................................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTACACTCAACAA....................................................................................................................................................................................................................................................... 20 2 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................TAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 20 2 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
........................................CGGAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CCGTCCACTCAACAATTT.................................................................................................................................................................................................................................................... 18 1 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
........................................TGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................AGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................AGCCGGCCACTCAACAAT...................................................................................................................................................................................................................................................... 18 2 3 2.00 6 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0
........................................CAAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 2 2.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AACGAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 23 3 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..........................................AAGCCGGCCACTCAACAAT...................................................................................................................................................................................................................................................... 19 2 2 1.50 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................GAAGCCGTCCACTCA........................................................................................................................................................................................................................................................... 15 1 10 1.40 14 0 0 0 0 0 0 3 6 0 0 5 0 0 0 0
........................................CGAAGCCGTCCACTC............................................................................................................................................................................................................................................................ 15 1 10 1.20 12 0 0 0 0 0 0 2 5 0 0 3 2 0 0 0
...........................................GGCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 20 3 8 1.13 9 0 2 4 0 3 0 0 0 0 0 0 0 0 0 0
...........................................GGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 17 1 3 1.00 3 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0
.........................................GACGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................GCTGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................GAAGCCGTCAACTCAACAAT...................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAGGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................CTAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................CGAAGCCGTCTACTCAACAAT...................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCTACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACCATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................AGAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................CGAAGTCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................ACTAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................CGAAGCCATCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACCCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAATTTG................................................................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................TCAACGATGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................CGAAGACGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAACCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TGCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................ACGAAGCCGTCCACTCAACACT...................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................AGAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................CGAAGCCGTCCGCTCAACAA....................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................GTCCACTCAACAATG..................................................................................................................................................................................................................................................... 15 1 9 1.00 9 0 0 0 0 0 0 3 3 0 1 0 2 0 0 0
.......................................CCGAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................ACCGAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACACTG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAAGTCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................CTGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................CGATGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAATGTC................................................................................................................................................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACCCAACAAT...................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAGCAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................CGAAACCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 22 3 2 1.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................GAAGCCGTCCACTCACCAA....................................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GGTGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ACGATGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................GAAGCCGTCCACTCAACAATGG.................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAATA..................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CCGTCCACTCAACAATTTG................................................................................................................................................................................................................................................... 19 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCCGGCCACTCAACAA....................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAAAAAT...................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCCCTCAACAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAAC...................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGATGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGCAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................TGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................ACGAAGCCGGCCACTCAACAAT...................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................CAAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 20 2 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCATCAATG..................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................ATGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................AAGCCGTCCACTCAACAATA..................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................CAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 20 3 3 1.00 3 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................GATGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................AAGCCGGCCACTCAACAA....................................................................................................................................................................................................................................................... 18 2 6 0.83 5 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................GAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 20 3 4 0.75 3 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0
.........................................AAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 19 2 6 0.67 4 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................AAAGCCGTCCACTCAACAATG..................................................................................................................................................................................................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCCGGCCACTCAACAATGT.................................................................................................................................................................................................................................................... 19 3 14 0.64 9 0 1 3 0 2 1 0 1 0 0 0 0 0 0 1
.............................................CCGGCCACTCAACAATG..................................................................................................................................................................................................................................................... 17 2 7 0.57 4 0 0 0 0 0 0 1 0 0 2 0 1 0 0 0
.........................................TAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 19 2 6 0.50 3 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0
........................................CGAAGCCGTCCACTCAATA........................................................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................CCGTCCACTCAACAATGTC................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GAAGCCGTCCACTCAACCATG..................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................GCCGTCCACTCAAGAA....................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................CGAAGCCGTCCACTCGACAATG..................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCCGCCCACTCAACAAT...................................................................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................GAAGCCGTCCCCTCAACAA....................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................CGAAGCCGTCCACTCAACAACG..................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................CAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................CCGGCCACTCAACAAT...................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................GGTAACGCTTCTAGGA............................................................................................................................................................................. 16 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................GGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 16 1 4 0.50 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0
.......................................ACGAAGCCGTCCAATCAACAA....................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................AAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................ACGAAGCCGTCCCCTCAACAA....................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................ACCCGAAGCCGTCCACTCAA.......................................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................TAAGCCGGCCACTCAACAAT...................................................................................................................................................................................................................................................... 20 3 4 0.50 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..........................................AAGCCGTCCACCCAACAATG..................................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TCGAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................GCCGGCCACTCAACA........................................................................................................................................................................................................................................................ 15 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................ACTAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GAAGCCGTCCACTCAACAAGG..................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................GGAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................GTAAGCCGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................AACGACGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................CTAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................CTAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................ATGCCGTCGACTCAACAATGT.................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................GAAGCCGTCCACTCAACAATCT.................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AGCCGTCCACTCAACAATGC.................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GAGGCCGGCCACTCAACAA....................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................GAAACCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................GGCCGGCCACTCAACAATG..................................................................................................................................................................................................................................................... 19 3 12 0.33 4 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0
...........................................AGCCGGCCACTCAACAA....................................................................................................................................................................................................................................................... 17 2 10 0.30 3 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0
............................................GCCGTCCACTTAACAATG..................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................ACTAAGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 19 3 20 0.25 5 0 0 0 0 0 0 3 0 0 2 0 0 0 0 0
........................................CGAAGCCGTTCACTCATCAAT...................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................ACGGCGGAGTAGTAAAAA................................................................................... 18 2 9 0.22 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
........................................CTAAGCCGTCCACTCAAC......................................................................................................................................................................................................................................................... 18 2 9 0.22 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0
.........................................AAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 18 2 10 0.20 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................AGCCGTCCACTTAACAAT...................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................GCCGGCCACTCAACAATTTG................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................CCATTACAGGGTTAG........................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................CGGCCACTCAACAAT...................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................ACTAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................CCGGCCACTCAACAA....................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................CCCGTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 19 3 18 0.17 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................AACCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................GAAGCCGTTCACTCAACA........................................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................ACGAGGCCGTCCACTCAA.......................................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................CGTCCACTCAACAATC..................................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................ACGTCCACTCAACAAT...................................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................ACAAAGCCGTCCACTCAACAA....................................................................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TAAGCCGTCCACTCAACA........................................................................................................................................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................CGTCCACTCAACAATGC.................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................TAAACGAAGCCGTCCACTCA........................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................CAGCGTGTACTAGAC................................................................................................................................................................................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................CCGTCCGCTCAACAATG..................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................CGTCCACTCAACAATGG.................................................................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................AGCCGTCCACTCAACAAGG..................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................AAGCCGTCCATTCAACA........................................................................................................................................................................................................................................................ 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................GGGTGATACCGCGAGATGA.................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................GTAAAGCTTCTAGGA............................................................................................................................................................................. 15 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................AAGCCGTCCATTCAAC......................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................CGCCAGGGGTAGATTCAT............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TAGTGATTACTAGAGT............................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................GTCGATGCAAGGGAACG...................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................TGGTTAGATAGGGGTAATA............................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................TTACGGGGTTAGATG........................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................GCAAGAAAGGTCGAA............................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................CCTTCCACTCAACAATGT.................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CCGTCCACTCAGCAATGT.................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................CGAAGCCATCCACTCA........................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................ATTCCTGCTGTCGGAG............................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10893363-10893669 + dsi_26091 TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGTTGTTAATGTCCCAATCTACTCCCATTA--------------------------TGGGG-A-TCTA-C---------------TTTACTGCTGTCCCCATCTACG-TTCCATTGCGAAGA-------------------TCCTGCACAGGACAAACATGTAGCTAAATTCAA----------------------------------------------------AAAGAACCTAGCAATA-TATGTA---CTAAATGTATATAAGGA-------------------------------------------CAACTGCCTCCTC-----AT-CAAT--------------------------------------TTTTTGTATTATCACTAATA-ATC-T----CG-----------------------------------TTCTTTCCAGATTCCCGCCACAATCACTGACAGACATGTGGCTAACGATGCTATCGATGA
droSec2 scaffold_1:7691682-7691989 + TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGTTGTTAATGTCCCAATCTACTCCGATTA--------------------------TGGGT-A-TCTA-C---------------TTTACTGCTGTCCCCATCTACG-TTCCATTGCGAAGA-------------------TCCTGCACAGGACAACCTTGTGGCTAAATTCAAA---------------------------------------------------AAAGAAACTAGTAATA-TGTGTAGTAGTACATGTTTATAAGGA-------------------------------------------CAACTGCCTC--------AT-CAAG--------------------------------------TTTTTGTATTATCACTAAAA-ATC-T----CG-----------------------------------TTCTTTCCAGATTCCCGCCACAATCACTGACAGACATGTGGCTGACGATGCTATCGATGA
dm3 chr2R:10184448-10184693 + TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGTTGTTAATGTCCCAATCTACTC---------------------------------------------------------------TACTGCTGTCCCCATCTACG-TTCCATTGCGAAGA-------------------TCCTGCACAGGACAA-----------------------------------------------------------------------AATATACTAGCAATA-TATGCA---------------------------------------CT---CGTT-------------------------A----------------------------------------------CTA--TAACTTGTATTATCACTAATA-ATC-T----CG---------------------------------TATTTTTTCTAGATTCCCGCCACAATCACTGACAGACATGTGGCTGACGATGCTATCGATGA
droEre2 scaffold_4845:15656757-15657050 - TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGT---TAATGTCCCAATCTACTTCGATTA--------------------------TTGGC-A-TCTA-C---------------TT--ATGCTGTTTCCATCTACG-ATCCTTTGTAAAGG-------------------ACAAGCA-----------AGTAGCTATATTCAA-----------------------------------------------------AAGAAACTAGCACTA-TTTGTA---A--TATATATAGGAGGAAGG---A--CGC----A--CT---C--------------TAGTCAACTGGCTC--------ATACAGG--------------------------------------T-------TTATCAATAATA-ATC-T----CG-----------------------------------TTTCTTGCAGATTCCCGCCACAATCATTGACGGACATGTGGCTGACGATGCTTTCCATGA
droYak3 2R:10122028-10122280 + TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTAAGT---TAATGTCCCAATCTACTCCGATTA--------------------------TTGGC-T-TCTA-C---------------TTTACTGCGGTCCCCATCTACG-TTCCTATGTAAAGG-------------------ACAAGCA-----------ATTAGATAAATT-------------------------------------------------------------------------------------------AGGAGGAAGT---A---------------------------------------TTGGCTC--------ATACAAG--------------------------------------T----ATTTTATCACTAATA-ATC-T----CA-----------------------------------TTTTTTACAGATTCCCGCCACAATCATTGACGGACATGTGGCTGACGATGCTTTCCATGA
droEug1 scf7180000409462:2657637-2657863 - TGGGCATTGTTTAAGGCTATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGT---TAAAGGCG------------ATTA--------------------------------------------------------TCACTGTAGTTACAAATTATA-ATCCA-------AG-------------------TCCTGAAAACG------------------------------------------------------------------------------------------------------------------------AATAACC-CAAAAAAGAG---CGTT-------------------------CTTATCTTATACATA------------------------------------------TGTAT-AACCCTAATA-------------------------------------AAATGTTGT-TTTTTTTTAGATTCCCACCACAATCACTGACAGACATGTGGCTAACGATGCTTTCGATGA
droBia1 scf7180000301506:3077278-3077564 - TGGGCATTGTTCAAAGCCATGTCGCACATGCTTTGCATAGGCTACGGCAGGTGAGT---TAATGTCCCTAACTACTTGAGCTA-------------------------ACTGGT-A-ACCA-TTC-----------AA-TTACTACTGTCCCTATCTACT-CATCTTTGAAGTGA-------------------CCCCAT--AAGAT-------------------------------------TCTAAGA-----AATGTCTTTATT-TCAACAAAATATTGTTTTATTAAA-----------------------------------------------AAA---AGTG-------------------------T----------------------------------------------CTAACGCT---ACTTTACTTCTAAAAAAAC-T----T------------------------------GTTCT-TTTCTCCCAGATTCCCACCACAATCACTGACAGACATGTGGCTCACGATGCTGTCGATGA
droTak1 scf7180000415272:21124-21347 + G------------------------------------------------------T---TATTGTCTATATATACTTGGATTA--------------------------CTGGTTA-ACCG-CCC-----------AATTTACTAATGTCCCTATCTACTATTTCTTTAAAATGA-------------------ACAAGTATAGAATAA-----------TATT------------------------------------------------------------AAGAAT----------------------------------CAATATCC-CATATAGCAA---CGTT-------------------------T----------------------------------------------CTAACTTATTTGTACTTCTTATAAAA-ACCCC----T------------------------------GTTCT-CTTCCGCCAGATTCCCACCACAATCACTGACAGACATGTGGCTAACGATGCTGTCGATGA
droEle1 scf7180000491349:684650-684951 - TGGGCATTATTCAAGGCAATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGT---TAAAGTTTCTATCTACTTAGATTG--------------------------GGTGT-A-CCCA-CCT-----------ATTTTAGCACTGTCCCTATCTACT-TTTTT----------------------------------------------------------T-AAAAAGTAACTATAAATAATAGAGA-----AATAACTTCAAGTTAAGGGAAATGGT-----------------------------------------G-----TTT-------------TTGCT-------------------------CTTATCTACTCCATAAATATAATAATTCTGTTCCAAAAAAATAATGTAC--------------------AATA-ATG-C----GC-----------------------------------TCATTTCCAGATTCCCACCACAATCACTGACAGACATGTGGCTGACGATGCTGTCGATGA
droRho1 scf7180000777200:503837-504078 + TGGGCATTGTTTAAGGCCATGTCGCACATGCTCTGCATAGGCTATGGCAGGTGAGT---TAATGTTCCTATCTACTTTGGTTT--------------------------CTTGT-A-CCCA-C-------------------CTACTGTCCCTATCTACT-T------GAACCGAATAATAATTCTCTCTTAAATGCTGATGAA------------------------------------------------------------------------------------------------------------------------TAATGTCC-CATAAGACAA--------------------------------T----------------------------------------------CTGACTAATTATT-----------------ATTC---------------------------------------CCACTTGCAGATTCCCACCACAATCACTGACAGACATGTGGCTGACGATGCTGTCGATGA
droFic1 scf7180000453215:735684-735943 + TGGGCATTGTTCAAGGCCATGTCGCATATGCTCTGTATAGGCTACGGCAGGTGAGT---AAATGTCCCCAACCACTTGGATTA--------------------------GTT-------------------------------------------CTTCT-TCATG----------------------------------------------------------G-GAAGAGTTTACTTAAATTGTGTAGGTTGTTGGTCACCTAAGATTGGGATTCATGGT-----------------------------------------T-----TTT----------------------------------------------------------AATAAGATAATGCTATTATAGAAGTAACATTGCT--------------------AACA-CCC-C----TTTC---------------------------------TTTTCCACAGATTTCCACCACAATCACTGACAGACATGTGGCTCACGATGCTATCGATGA
droKik1 scf7180000302411:307461-307516 - TGGGCACTGTTTAAGGCCATGTCGCATATGCTGTGCATAGGCTATGGCAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:14535133-14535198 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-T----GC-----------------------------------TTATTATTAGATTCCCACCACAATCACTGACAGACATGTGGCTGACGATGCTATCGATGA
droBip1 scf7180000396428:291136-291212 - TGGGCGTTGTTCAAGGCCATGTCGCATATGTTGTGCATAGGCTACGGCAGGTGAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAACTATACTACCATAAT
dp5 3:17433854-17434012 + TGGGCATTGTTCAAGGCTATGTCGCACATGCTGTGCATTGGCTACGGCAGGTATGT-------GTCTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAAA-TCCACTCCCACTCTTTTCGTGATGAAAACTTTAATCATACGTTCT-ATTGTTGCAGATTTCCACCACAATCACTGACAGACATGTGGCTGA---------------
droPer2 scaffold_31:358172-358330 - TGGGCATTGTTCAAGGCTATGTCGCACATGCTGTGCATTGGCTACGGCAGGTATGT-------GTCTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAAA-TCCACTCCCACTCTTTTCGTGATGAAAACTTTAATCATACGTTCT-ATTGTTGCAGATTTCCACCTCAATCACTGACAGACATGTGGCTGA---------------
droWil2 scf2_1100000004510:645507-645562 - TGGGCATTATTCAAGGCCATGTCGCATATGCTGTGCATAGGTTACGGCAGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:19143199-19143254 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGATTTCCGCCACAATCACTGACGGACATGTGGCTGACGATGCTCTCGATGA
droMoj3 scaffold_6496:12832023-12832330 + TGGGCATTATTCAAAGCCATGTCACATATGCTGTGCATAGGATACGGCAGGTAAGC---AAAAACTGCATATAATATCAAT-AGATGAATATTTTATATATATTGTATTGTGATAAACTCAATCTATTTGATCTTT--T---ATACTGTTTAT-------------------------------------------------AATATTTTTTTATATTTAAAATA----------------------------------------------------ATATTGAATTTTTTAATAGTATGTA---GTATATATATATAAATAAAG---T--TCC----A--CTTTTATCTCTTATCATATCTTATCAAT------------------------------------------------------------------------------------T----GA-----------------------------------CCTTTTGCAGATTTCCACCACAATCACTGACGGATATGTGGCTAACGATGCTATCGATGA
droGri2 scaffold_15245:13181059-13181114 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGATTTCCTCCACAATCACTGACGGACATGTGGCTGACGATGCTGTCGATGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGTTGTTAATGTCCCAATCTACTCCCATTA--------------------------TGGGG-A-TCTA-C---------------TTTACTGCTGTCCCCATCTACG-TTCCATTGCGAAGA-------------------TCCTGCACAGGACAAACATGTAGCTAAATTCAA----------------------------------------------------AAAGAACCTAGCAATA-TATGTA---CTAAATGTATATAAGGA-------------------------------------------CAACTGCCTCCTC-----AT-CAAT--------------------------------------TTTTTGTATTATCACTAATA-ATC-T----CG-----------------------------------TTCTTTCCAGATTCCCGCCACAATCACTGACAGACATGTGGCTAACGATGCTATCGATGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACTAATA-ATC-T----CG-----------------------------------TTCTTTCCAG..................................................2712.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACATGTGGCTAAC..............1811.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................ATATAAGGA-------------------------------------------CAACTGCCT.....................................................................................................................................................................................1811.00100100000000000000
droSec2
TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGTTGTTAATGTCCCAATCTACTCCGATTA--------------------------TGGGT-A-TCTA-C---------------TTTACTGCTGTCCCCATCTACG-TTCCATTGCGAAGA-------------------TCCTGCACAGGACAACCTTGTGGCTAAATTCAAA---------------------------------------------------AAAGAAACTAGTAATA-TGTGTAGTAGTACATGTTTATAAGGA-------------------------------------------CAACTGCCTC--------AT-CAAG--------------------------------------TTTTTGTATTATCACTAAAA-ATC-T----CG-----------------------------------TTCTTTCCAGATTCCCGCCACAATCACTGACAGACATGTGGCTGACGATGCTATCGATGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGTTGTTAATGTCCCAATCTACTC---------------------------------------------------------------TACTGCTGTCCCCATCTACG-TTCCATTGCGAAGA-------------------TCCTGCACAGGACAA-----------------------------------------------------------------------AATATACTAGCAATA-TATGCA---------------------------------------CT---CGTT-------------------------A----------------------------------------------CTA--TAACTTGTATTATCACTAATA-ATC-T----CG---------------------------------TATTTTTTCTAGATTCCCGCCACAATCACTGACAGACATGTGGCTGACGATGCTATCGATGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACAGACATGTGGCTGACGAT...........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGGCCATGTCGCACATGCTCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGAGTTGTTAATGTCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGTGGCTGACGATG..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGTGGCTGACGATGCTATCGATG.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGTGGCTGACGATGCTATCGA...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTGACAGACATGTGGCT.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACATGCTCTGCATAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................TGCTCTGCATAGGCTACGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGCCACAATCACTGACAGACAT.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATGTCGCACATGCTCTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CATGTCGCACATGCTCTGCATAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACATGTGGCTGACGAT...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA-ATC-T----CG---------------------------------TATTTTTTCTAGATC...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGT---TAATGTCCCAATCTACTTCGATTA--------------------------TTGGC-A-TCTA-C---------------TT--ATGCTGTTTCCATCTACG-ATCCTTTGTAAAGG-------------------ACAAGCA-----------AGTAGCTATATTCAA-----------------------------------------------------AAGAAACTAGCACTA-TTTGTA---A--TATATATAGGAGGAAGG---A--CGC----A--CT---C--------------TAGTCAACTGGCTC--------ATACAGG--------------------------------------T-------TTATCAATAATA-ATC-T----CG-----------------------------------TTTCTTGCAGATTCCCGCCACAATCATTGACGGACATGTGGCTGACGATGCTTTCCATGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TGGGCATTGTTCAAGGCCATGTCGCACATGCTCTGCATAGGCTACGGCAGGTAAGT---TAATGTCCCAATCTACTCCGATTA--------------------------TTGGC-T-TCTA-C---------------TTTACTGCGGTCCCCATCTACG-TTCCTATGTAAAGG-------------------ACAAGCA-----------ATTAGATAAATT-------------------------------------------------------------------------------------------AGGAGGAAGT---A---------------------------------------TTGGCTC--------ATACAAG--------------------------------------T----ATTTTATCACTAATA-ATC-T----CA-----------------------------------TTTTTTACAGATTCCCGCCACAATCATTGACGGACATGTGGCTGACGATGCTTTCCATGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................GTCGCACATGCTCTGCATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000
...........................................................................................................................................................................................................................AAATT-------------------------------------------------------------------------------------------AGGAGGAAGT---A---------------------------------------TTGGCTC--------............................................................................................................................................................................2311.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACATGTGGCTGACGATGCT........2411.00110000000000
droEug1
TGGGCATTGTTTAAGGCTATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGT---TAAAGGCG------------ATTA--------------------------------------------------------TCACTGTAGTTACAAATTATA-ATCCA-------AG-------------------TCCTGAAAACG------------------------------------------------------------------------------------------------------------------------AATAACC-CAAAAAAGAG---CGTT-------------------------CTTATCTTATACATA------------------------------------------TGTAT-AACCCTAATA-------------------------------------AAATGTTGT-TTTTTTTTAGATTCCCACCACAATCACTGACAGACATGTGGCTAACGATGCTTTCGATGASizeHit CountTotal NormTotal
No Reads
droBia1
TGGGCATTGTTCAAAGCCATGTCGCACATGCTTTGCATAGGCTACGGCAGGTGAGT---TAATGTCCCTAACTACTTGAGCTA-------------------------ACTGGT-A-ACCA-TTC-----------AA-TTACTACTGTCCCTATCTACT-CATCTTTGAAGTGA-------------------CCCCAT--AAGAT-------------------------------------TCTAAGA-----AATGTCTTTATT-TCAACAAAATATTGTTTTATTAAA-----------------------------------------------AAA---AGTG-------------------------T----------------------------------------------CTAACGCT---ACTTTACTTCTAAAAAAAC-T----T------------------------------GTTCT-TTTCTCCCAGATTCCCACCACAATCACTGACAGACATGTGGCTCACGATGCTGTCGATGASizeHit CountTotal NormTotal
No Reads
droTak1
G------------------------------------------------------T---TATTGTCTATATATACTTGGATTA--------------------------CTGGTTA-ACCG-CCC-----------AATTTACTAATGTCCCTATCTACTATTTCTTTAAAATGA-------------------ACAAGTATAGAATAA-----------TATT------------------------------------------------------------AAGAAT----------------------------------CAATATCC-CATATAGCAA---CGTT-------------------------T----------------------------------------------CTAACTTATTTGTACTTCTTATAAAA-ACCCC----T------------------------------GTTCT-CTTCCGCCAGATTCCCACCACAATCACTGACAGACATGTGGCTAACGATGCTGTCGATGASizeHit CountTotal NormTotal
No Reads
droEle1
TGGGCATTATTCAAGGCAATGTCGCACATGCTCTGCATAGGCTACGGCAGGTGAGT---TAAAGTTTCTATCTACTTAGATTG--------------------------GGTGT-A-CCCA-CCT-----------ATTTTAGCACTGTCCCTATCTACT-TTTTT----------------------------------------------------------T-AAAAAGTAACTATAAATAATAGAGA-----AATAACTTCAAGTTAAGGGAAATGGT-----------------------------------------G-----TTT-------------TTGCT-------------------------CTTATCTACTCCATAAATATAATAATTCTGTTCCAAAAAAATAATGTAC--------------------AATA-ATG-C----GC-----------------------------------TCATTTCCAGATTCCCACCACAATCACTGACAGACATGTGGCTGACGATGCTGTCGATGASizeHit CountTotal NormTotal
No Reads
droRho1
TGGGCATTGTTTAAGGCCATGTCGCACATGCTCTGCATAGGCTATGGCAGGTGAGT---TAATGTTCCTATCTACTTTGGTTT--------------------------CTTGT-A-CCCA-C-------------------CTACTGTCCCTATCTACT-T------GAACCGAATAATAATTCTCTCTTAAATGCTGATGAA------------------------------------------------------------------------------------------------------------------------TAATGTCC-CATAAGACAA--------------------------------T----------------------------------------------CTGACTAATTATT-----------------ATTC---------------------------------------CCACTTGCAGATTCCCACCACAATCACTGACAGACATGTGGCTGACGATGCTGTCGATGASizeHit CountTotal NormTotal
No Reads
droFic1
TGGGCATTGTTCAAGGCCATGTCGCATATGCTCTGTATAGGCTACGGCAGGTGAGT---AAATGTCCCCAACCACTTGGATTA--------------------------GTT-------------------------------------------CTTCT-TCATG----------------------------------------------------------G-GAAGAGTTTACTTAAATTGTGTAGGTTGTTGGTCACCTAAGATTGGGATTCATGGT-----------------------------------------T-----TTT----------------------------------------------------------AATAAGATAATGCTATTATAGAAGTAACATTGCT--------------------AACA-CCC-C----TTTC---------------------------------TTTTCCACAGATTTCCACCACAATCACTGACAGACATGTGGCTCACGATGCTATCGATGASizeHit CountTotal NormTotal
No Reads
droKik1
TGGGCACTGTTTAAGGCCATGTCGCATATGCTGTGCATAGGCTATGGCAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-T----GC-----------------------------------TTATTATTAGATTCCCACCACAATCACTGACAGACATGTGGCTGACGATGCTATCGATGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGTGGCTGACGATGC.........1911.001000001
droBip1
TGGGCGTTGTTCAAGGCCATGTCGCATATGTTGTGCATAGGCTACGGCAGGTGAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAACTATACTACCATAATSizeHit CountTotal NormTotal
No Reads
dp5
TGGGCATTGTTCAAGGCTATGTCGCACATGCTGTGCATTGGCTACGGCAGGTATGT-------GTCTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAAA-TCCACTCCCACTCTTTTCGTGATGAAAACTTTAATCATACGTTCT-ATTGTTGCAGATTTCCACCACAATCACTGACAGACATGTGGCTGA---------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................GTGCATTGGCTACGGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
droPer2
TGGGCATTGTTCAAGGCTATGTCGCACATGCTGTGCATTGGCTACGGCAGGTATGT-------GTCTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAAA-TCCACTCCCACTCTTTTCGTGATGAAAACTTTAATCATACGTTCT-ATTGTTGCAGATTTCCACCTCAATCACTGACAGACATGTGGCTGA---------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGGGCATTATTCAAGGCCATGTCGCATATGCTGTGCATAGGTTACGGCAGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................TGCATAGGTTACGGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
droVir3
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGATTTCCGCCACAATCACTGACGGACATGTGGCTGACGATGCTCTCGATGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCACAATCACTGACGGACATGT.....................2412.002000000000000000000000000000002000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCACAATCACTGACGGACA........................2211.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
TGGGCATTATTCAAAGCCATGTCACATATGCTGTGCATAGGATACGGCAGGTAAGC---AAAAACTGCATATAATATCAAT-AGATGAATATTTTATATATATTGTATTGTGATAAACTCAATCTATTTGATCTTT--T---ATACTGTTTAT-------------------------------------------------AATATTTTTTTATATTTAAAATA----------------------------------------------------ATATTGAATTTTTTAATAGTATGTA---GTATATATATATAAATAAAG---T--TCC----A--CTTTTATCTCTTATCATATCTTATCAAT------------------------------------------------------------------------------------T----GA-----------------------------------CCTTTTGCAGATTTCCACCACAATCACTGACGGATATGTGGCTAACGATGCTATCGATGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGTGGCTAACGATGCT........2111.001001000
...................................................................................................................................................................................................................................................................................................................................................................CATATCTTATCAAT------------------------------------------------------------------------------------T----GA-----------------------------------CCTTTTGCAG..................................................2711.001000100
........................CATATGCTGTGCATAGGATACGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
droGri2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGATTTCCTCCACAATCACTGACGGACATGTGGCTGACGATGCTGTCGATGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGACATGTGGCTGACG.............2011.00101

Generated: 05/18/2015 at 12:27 PM