ID:

dsi_26089

 Coordinate:

3l:7223352-7223430 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7222103_7223351_+]; CDS [3l_7222103_7223351_+]; CDS [3l_7223431_7223609_+]; exon [3l_7223431_7223943_+]; intron [3l_7223352_7223430_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------##################################################
CGCGCCGCGCTGGCCGGGCGTCTACACGTTCACCGTTTGCCTGAGATCGGGTGAGTTTCTAAAAGAGTTTGCATTGAATAGTACATTGTCATTGGAAGGGATTCTCACACAATGTCCCCTCTGTTTCAGACTCGTATTTGGGTATGGATCAGCAGCAGGAGCTGAAGCTGGATGTACAG
**************************************************(((((..(((.....(((..(((.((.......)).))).))).....)))..))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
......................TACACGTTCACCGTTTGCCTGAGA..................................................................................................................................... 24 0 1 2.00 2 0 1 0 1 0 0 0
.........................................................................................................................................................AGCAGGAGCTGAAGCTGGAT...... 20 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................................ATGGATCAGCAGCAGGAGCT................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................CAGCAGCAGGAGCTGAAGCTG......... 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................TATGGATCAGCAGCAGGAGCTGAAGC........... 26 0 1 1.00 1 0 0 0 0 0 1 0
............................................................................................................................ATCGGACTCGTATTTGGGT.................................... 19 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................CGGACTCGTATTTGGGTATGGATCAGC.......................... 27 1 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................TCGGACTCGTATTTGGGTATGGATCAGC.......................... 28 1 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................GTATTTGGGGATGGATCAGCAGCAGGA................... 27 1 1 1.00 1 0 0 1 0 0 0 0
...................GTCTACACGTTCACCGTT.............................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0
.....................CTACACGTTCACCGTTTGCCTGAGA..................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................ATGGATCAGCAGCAGGAGCTG............... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................TTTGGGTATGGATCAGCAGCAGGAGCT................ 27 0 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................................................................GGATCAGCAGCAGGAGCTG............... 19 0 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................................ATGGATCAGCAGCAGGA................... 17 0 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................AGTTGGGTATCGATCAGC.......................... 18 2 3 0.33 1 0 0 1 0 0 0 0
..........................................................................................................................................................GCAGGAGCTGAAGCT.......... 15 0 7 0.14 1 0 1 0 0 0 0 0
...........................................................................................................................GATCGGACTCGTATTTGGGT.................................... 20 3 7 0.14 1 0 0 1 0 0 0 0
.................................................................................................CGGATTCTCACGCAATG................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 1
................................................................................................................................................................GCTGAAGCTGGATGAA... 16 1 11 0.09 1 0 0 0 0 0 1 0
CGAGCCGCGCGGGCCG................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

GCGCGGCGCGACCGGCCCGCAGATGTGCAAGTGGCAAACGGACTCTAGCCCACTCAAAGATTTTCTCAAACGTAACTTATCATGTAACAGTAACCTTCCCTAAGAGTGTGTTACAGGGGAGACAAAGTCTGAGCATAAACCCATACCTAGTCGTCGTCCTCGACTTCGACCTACATGTC
**************************************************(((((..(((.....(((..(((.((.......)).))).))).....)))..))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.CGCGACGCGATCGGCCCG................................................................................................................................................................ 18 2 3 0.33 1 1 0 0
.............................................................................................GCTTGCCTAAGAGTGTGCTA.................................................................. 20 3 4 0.25 1 0 1 0
.................................................................................................................................................CCAAGTCGTCGTCCTCG................. 17 1 16 0.13 2 0 0 2
.......................................................................................................GAGTGTGATACAGGGGT........................................................... 17 2 9 0.11 1 0 0 1
......................................................................................................................GAGACCAAGTCTGAG.............................................. 15 1 9 0.11 1 1 0 0

Generated: 04/23/2015 at 10:12 PM