ID:

dsi_26077

Coordinate:

3r:10553780-10553929 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

0.4	0.6	0.7

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(CAA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

GTAATTTAAACAACAACACGCAACAACGAAACCCATAATTGAAACCACTCCAATAAATACATATTACAAATTCAACAACAACTCCAAAACCATGTCAACTACCTCAACAACCGTCACTGTAATTACAACCACAACTTCAACAACATACGACTCCAACAACAATTTCATCAACAACTCCAACCGAATTTCAACAACAACAGGCTCTTGCGCGCCGAATTGTATGCATTGAGGCGCAAGGGTGCGGCCAAGG *******************************************************************************************************....................................................................................***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
..........................................................................................................................TTACAACCACAACTTCAACAACATATT.....................................................................................................	27	2	1	2.00	2	2	0	0	0	0
.........................................................................................................AACAACCGTCACTGTAATTACAACCAC......................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..........................................................................................................ACAACCGTCACTGTAATTACAACCACAAC...................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................TGCGCGCCGAATTGTATGCATTGAGG...................	26	0	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................AATTTCAGGAACAACAGGCTC..............................................	21	2	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................TATGCATTGAGGCGCAAGGGTGCGGC.....	26	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................TGTAATTACAACCACAACTTCAACAA...........................................................................................................	26	0	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................TCATCAACAACTCCAACCGAATTTC.............................................................	25	0	1	1.00	1	1	0	0	0	0
.......................................................................................................TCAACAACCGTCACTGTAATTACAACCA.......................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................AACAACTCCAACCGAATTTCAACAACAA.....................................................	28	0	1	1.00	1	1	0	0	0	0
.............................................................................................................ACCGTCACTGTAATTACAACCACAAC...................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
................................................................................................GTCAACCTCAACAACCGTCACTGTAAT...............................................................................................................................	27	3	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................AATTGTATGCATTGA.....................	15	0	3	0.33	1	0	0	0	1	0
.............................................................................................................................................................................................................................TGCATTCAGGGGCAAGGTT..........	19	3	19	0.05	1	0	0	0	0	1
......................................................................................AAACGATGTCAACTA.....................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1
...........................................................................................................................TACAACCACAACATCCACA............................................................................................................	19	2	20	0.05	1	0	1	0	0	0

Anti-sense strand reads

CATTAAATTTGTTGTTGTGCGTTGTTGCTTTGGGTATTAACTTTGGTGAGGTTATTTATGTATAATGTTTAAGTTGTTGTTGAGGTTTTGGTACAGTTGATGGAGTTGTTGGCAGTGACATTAATGTTGGTGTTGAAGTTGTTGTATGCTGAGGTTGTTGTTAAAGTAGTTGTTGAGGTTGGCTTAAAGTTGTTGTTGTCCGAGAACGCGCGGCTTAACATACGTAACTCCGCGTTCCCACGCCGGTTCC ***********************************************************....................................................................................*******************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
..............................................................CAATGTTTAAGGTGTTGTTGAGT.....................................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0
.............................................................ACAATGTTTAAGGTGTTGTTGAGT.....................................................................................................................................................................	24	3	1	1.00	1	1	0	0	0	0	0
..........................................................................................................TGTTGGCAGTGATATTAAGGGT..........................................................................................................................	22	3	1	1.00	1	0	0	1	0	0	0
......................................................................AAGTTGTTGCTGAGGTTTTGGTG.............................................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
.........GGTTGTTGTGCGTTGTTGC..............................................................................................................................................................................................................................	19	1	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................TGTTAAAGTAGTTGTTC...........................................................................	17	1	3	0.67	2	0	2	0	0	0	0
.......................................ACTTTGGTGAAGTTAT...................................................................................................................................................................................................	16	1	9	0.56	5	0	5	0	0	0	0
..........GTTGTTGTGCGATGTTG...............................................................................................................................................................................................................................	17	1	2	0.50	1	0	1	0	0	0	0
....AAATTTGTTGTTGTTCGT....................................................................................................................................................................................................................................	18	1	2	0.50	1	0	0	0	1	0	0
.....................................................................AAAGTTGTTGCTGAGGTGTTGG...............................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................TTGGAGTTGTAGTTGTTGTAT.......................................................................................................	21	2	3	0.33	1	1	0	0	0	0	0
.............................................................................................................................GTTGAAGTTGAAGTTGTTGGAT.......................................................................................................	22	3	6	0.33	2	2	0	0	0	0	0
................................................................................................ATGATGGAGTTGTTGG..........................................................................................................................................	16	1	4	0.25	1	0	1	0	0	0	0
......................................AACTTTGGTGAAGTTAT...................................................................................................................................................................................................	17	1	6	0.17	1	0	1	0	0	0	0
...................................................................................TGTTTTGGTACAGTTG.......................................................................................................................................................	16	1	8	0.13	1	0	1	0	0	0	0
................................................................................................................................................................TTAAAGTAGTTGTTTTGGT.......................................................................	19	2	12	0.08	1	1	0	0	0	0	0
....................................................................TAAAGTTGTTGCTGAGGT....................................................................................................................................................................	18	2	12	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................TAAAGTTGTTGCTGAGGT.......................................................................	18	2	12	0.08	1	1	0	0	0	0	0
............................................................................................................................................GTTGTATGGTGAGGTTTATG..........................................................................................	20	3	14	0.07	1	0	1	0	0	0	0
..........GTTGTTGTGCGATGTTA...............................................................................................................................................................................................................................	17	2	19	0.05	1	0	1	0	0	0	0
.................................................................................................................AGTGACAATAATGTT..........................................................................................................................	15	1	19	0.05	1	0	0	0	0	1	0
...........................................................................GTTGCTGAGGTGTTGGT..............................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1
..........................................................................GGTTGTTGAGGTTTT.................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................AGGTTGCCTTAAAGT............................................................	15	1	20	0.05	1	0	0	0	0	1	0

Generated: 04/24/2015 at 10:44 AM