dsi_26075

########################################################################################################################################################################################################################################################## ACAAAATAGACGAAATAGATGGAGGAGGCGGAGGCGGAGGAGGAGCTGGTGTACATAAGGTGCCGCCGATGCTTGATAATGAACCCGAGGCCGAGGAGCAGACGGCGACGGCAGAAGCACTCCCATTCGCATTAAACTTGAACGTGGCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCCAGCGGCGACACGACCACAAAAACGACGACGCCATGGATGGGGCCAAAAATAA ************************************************((.((((((((.(((((((((((((((......(((...((((..(((......((((.((.((.....)).))..))))......))).....))))..)))..))))))))))....)))))...))))).)))))(((...)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	O001 Testis	SRR618934 dsim w501 ovaries	M023 head	SRR902008 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
................................................GTGTACATAAGGTGCCGC........................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
..........................................................GGTGCCGCCGATGCTTGATAATGAACC.....................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0
.................................................................................................................................................GGTAAGGGAAGTCGAGCA.......................................................................................	18	2	2	0.50	1	0	0	1	0	0	0	0	0
...........................................................................................................................CGTTCGCGTTAGACTTGAAC...........................................................................................................	20	3	2	0.50	1	0	0	0	1	0	0	0	0
..................ATGGAGGAGGAGGAGGCGGAGGAG................................................................................................................................................................................................................	24	1	6	0.17	1	0	0	0	0	1	0	0	0
...........................................................................................................................................GTACGTGACAAGGGGAATC............................................................................................	19	3	14	0.14	2	0	0	0	0	0	2	0	0
.........................................GGAGGTAGTGTACATATGG..............................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	0	0	1
............................................................................................................CGGCAGCAGCACTCCC..............................................................................................................................	16	1	15	0.07	1	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................AACGACGACGCCTTG.................	15	1	17	0.06	1	0	0	1	0	0	0	0	0
..................ATGAAAGAGGCCGAGGCGGA....................................................................................................................................................................................................................	20	3	18	0.06	1	1	0	0	0	0	0	0	0
............................................................................................................................ATTAGCATTAACCTTAAACG..........................................................................................................	20	3	18	0.06	1	0	0	0	0	0	0	1	0

TGTTTTATCTGCTTTATCTACCTCCTCCGCCTCCGCCTCCTCCTCGACCACATGTATTCCACGGCGGCTACGAACTATTACTTGGGCTCCGGCTCCTCGTCTGCCGCTGCCGTCTTCGTGAGGGTAAGCGTAATTTGAACTTGCACCGTTCCCTTTAGCTCGTAGTTGTCCGCCTTTTAGAATTACTGCGGAAGCCGGTCGCCGCTGTGCTGGTGTTTTTGCTGCTGCGGTACCTACCCCGGTTTTTATT ************************************************((.((((((((.(((((((((((((((......(((...((((..(((......((((.((.((.....)).))..))))......))).....))))..)))..))))))))))....)))))...))))).)))))(((...)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
...........................................................CCCGGGGGCTACGAACTA.............................................................................................................................................................................	18	2	2	0.50	1	0	1	0	0
...................................................................................................TCTGCCGCTCCCGTCTTCA....................................................................................................................................	19	2	3	0.33	1	0	0	1	0
.....................................................GTATTCCACGGCCGC......................................................................................................................................................................................	15	1	3	0.33	1	1	0	0	0
...............................................................GCGGCTACGAAGTAT............................................................................................................................................................................	15	1	4	0.25	1	1	0	0	0
TCCTTTATCTGCTTTATCT.......................................................................................................................................................................................................................................	19	2	5	0.20	1	1	0	0	0
............................................................ACGGCTGCTACGAAGTATC...........................................................................................................................................................................	19	3	9	0.11	1	1	0	0	0
............................................................ACCGCGGCTACGAAGTA.............................................................................................................................................................................	17	2	9	0.11	1	1	0	0	0
.............................................................CCGCGGCTACGAAGTA.............................................................................................................................................................................	16	2	20	0.10	2	2	0	0	0
............................................................ACCGCGGTTACGAACTA.............................................................................................................................................................................	17	2	18	0.06	1	1	0	0	0
..............................................................CGCGGCTACGAAGTAT............................................................................................................................................................................	16	2	19	0.05	1	1	0	0	0
................................................................................................................................................................................................AGCCGGTTGCCGCTG...........................................	15	1	20	0.05	1	1	0	0	0
.........................................................................................................................................................................................CTGTGGAAGGTGGTCGCCG..............................................	19	3	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................GTGGCCGCTGTGCTCGGGT..................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:1524453-1524702 -	dsi_26075	ACAA--------A-ATAGACG---------A------AATAGATGGAGGAGGCGG---AGGCGG---AGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACCCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGACGGCA------GAAGCACTCCCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA
droSec2	scaffold_2:1640767-1640992 -		ATGG------------------------------------------A------GG---AGGCGG---AGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACCCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGACGGCA------GAAGCACTCCCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA
dm3	chr3L:1614569-1614809 -		ACAA--------A-ATAGACG---------A------AATAGATG---------T---AGGCGG---AGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGTTTGATAATGAACCCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGGCGGCA------GAAGCACTCTCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA
droEre2	scaffold_4784:1594018-1594255 -		ACAA--------A-ATAGACG---------A------AATAGATGGC------GG---AGGAGG---AGGAGGA-------GC-------------------------------------------------------------------------------CGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACCCGAGGACG---AG------------------------GAGC------------------------------AGACGGCGGCGACA------GAAG------CATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA
droYak3	3L:1565633-1565888 -		ACAA--------A-ATAGACG---------A------AATAGATGGC------GC---AGGTAGAGAAGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACTCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGGCGGCAGAGGCAGAAGCATTCGCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AAACC---------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GTGGCCAAAAATAA
droEug1	scf7180000409007:433258-433477 -		ACGG------------------------------------------A------G------GCGG---CGGAGGATTGGGTAGC-----------------------------------------------------------------------------AGTGGTGGACAT---AAGG------------TGCCGCCAATGTTTGATAATGAACTCGAGGCCG---AA------------------------GAGC------------------------------GACCGGCGGCGGC------------------AGAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GAGGCCAAAAATAA
droBia1	scf7180000300910:1733231-1733486 -		ATGA--------G-ATCAGCG---------G------CGCCGG---CGGA---GGAGGAGGTGG---AGGAGGC-------AC-------------------------------------------------------------------------------TGCTGTACAT---AAGG------------TGCCGCCGATGTTTGATAATGAACTCGAGGCCG---AG------------------------GAGC------------------------------AGGCGACGACGTCG------GA---------GGAGGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGAG---------------------------------------------------------AGAGG---CGACAC------GACCACAGCCGCAAA------------------------------------------------------------------------AACGACGACGCCATTACCATTACCATGGGG------GAGGCCAAAAATAA
droTak1	scf7180000415095:165269-165496 +		-------------------CG---------A------AATAAATGGA------G---------------GAGGA-------GC----------------------------------------------------------------------------AAGTGGTGTACAT---AAGG------------TGCCGCCGATGTTTGATAATGAACTCGAGGTCG---GG------------------------CA------------------------------------------AGAA------GAGGGTGAGGCTTTCACATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGGG---------------------------------------------------------AGAAG---CGACACAACTACGACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATTAGCGCGGATTTGGCCAAAAATAA
droEle1	scf7180000491249:3966705-3966903 +		AA--------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGTGTACAT---AAGGCGGTGGTGCTGCTACTACCGACGGTTGATAATGAACTCGAGGGCG---TA------------------------CAT---------------------------------------GCGGT------------------AGAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AAAGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA
droRho1	scf7180000776850:336533-336746 +		ACGG------------------------------------------C------G---------------GAGG-----------------------------------------------------------------------------------------AGGTGTACAT---AAGG------------TGCTAGCGATGTTTGATAATGAACTCGAGGCCG---AG------------------------GAGC------------------------------GTTCGGCGGCAGCA------GAGGCAGAGGCAAAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCGTCGGCA---------------------------------------------------------AGCAG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA
droFic1	scf7180000454113:468016-468226 +		ACAG------------------------------------------C------G---------------A-------------------------------CAGCGATATA----------------------------------------------------CATGCACAT---AAGG---------------------TGTTTGATAATGAACTCGAGGCCG---AG------------------------GA---------------------------------------------------------------AGAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCCAGAAGC------------------------AGAAGCAGAATCA---------------GAAGCGACGAAAC---GACGACCACA------AAATC---------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GTGGCCAAAAATAA
droKik1	scf7180000302577:84081-84306 -		ACGG------------------------------------------A------G---------------GAGGA-------GG-------------------------------------------------------------------------------CAGTGTACAT---AAGG---------------------TGTTTGATAATGAACCCGAGGCCG---AG------------------------AGGA------------------------------GGGCAACGACGACGAAG---GC---------GGCAGCATTAAACTTGAACGTGG----------------------------------------------------------------------TGGA------------------GGCGGTG--------GCGAAGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------A---G---CGACAC------GACCACA------AAGGCAGAG------TC---------------------------------------------------------AGCGACGACGCC------------ATGGATGTGGATGTGGCCAAAAATAA
droAna3	scaffold_13337:12489276-12489621 -		ACAT------------------------------------------A------G---------------AAGG--------------------------------------------------------------------------------TGGTGCCGATGATGTACAT---AAGG---------------------CGTTTGATAATGAACTCGAGGCTG---ATGGCGATGATGG---------CGCTGAGTGGCGGGTGGATGTGGAGGTGGAGGTGG---A---GGCGGCAGCA------GC---------AGCAGCATTAAACTTGAACGCCACC--------------------------------------------------ATA-GAGGTGGCG----------------------------CTGGTG--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGTCCGATTCCGAGTCCGAATCCGAGTCCGAGTCAGAATC---ATCA---------GA---AGCTA---CTACAC------GACCACA------AAAACAGAACCAGTAGAATTAGAGATAATCG--------------AGAAAAACAA-------------------AATGACGACGCC------------ATGAAT------TTGGCCAAAAATAA
droBip1	scf7180000396589:1497956-1498271 +		ACAT------------------------------------------A------G---------------AAGG--------------------------------------------------------------------------------TGGTGGCGATGATGTACAT---AAGG---------------------CGTTTGATAATGAACTCGAGGCTGGCCACGGCGATGATGATGAGTGGGATGATGAGCGGCG---------------------------GGC------AGCG------GC---------GGTAGCATTAAACTTGAACGCCACC--------------------------------------------------GTA-GAGGTGGCG----------------------------CTGGTG--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGTCCGAGTC------------------------AGAATCTGTATCAGGAGAAGGAGAAGCAAAAG---CTACAC------GACCACA------AAAACAGCA------GAATCGGGGAAAACAG--------------AGAAAAACAA-------------------AATGACGACGCC------------ATGAAT------TTGGCCAAAAATAA
dp5	XR_group8:4171806-4172148 -		ACACGGATCCGCA-ATGGAC--------------------------------------AGGCGG---AGAAGGT-------GCTGCCGCTGCCGCCTCCGCTGCCGCCGCCGCTGCT-GTCTCCGTGAACGCC---------------ACAAATGATGATGATGATGTACAT---AAGG---------------------TGTTTGATAATGAACTCGAACCTC---AT------------------------GGGCGTCGG------------------CCGGGGGAGAC------AGCA------GC---------AGCAACATTAAACTTGAACGTGCCC---------------------------------------------------------------------GATGCCGATGCCGATGCCGAAGGTGTTGGCGAGC---AGAAGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGCC---------------------------------------------------------A---G---CGACAC------GACCACA------ACGACAGCG------AC------------------------------------GG---------------CGACGGCGACTACGCC------------ATGGATGTGGATGTGCCCAAAAATAA
droPer2	scaffold_29:407661-407988 -		ACACGGATCCGCA-ATGGAC--------------------------------------AGGCGG---AGAAGGT-------GCT---------GCCACCGCC----------------------------------------------ACAAATGATGATGATGATGTACAT---AAGG---------------------TGTTTGATAATGAACTCGAACCTC---AT------------------------GGGCGTCGG------------------CCGGGGGAGACAGCAGCAGCA------GC---------AGCAGCATTAAACTTGAACGTGCCC---------------------------------------------------------------------GATGCCGATGCCGATGCCGAAGGTGTTGGCGAGC---AGAAGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGCC---------------------------------------------------------A---G---CGACAC------GACCACG------ACCACAACG------ACAGCGAGAACGACGGCGA------------------CGG---------------CGACGGCGACTACGCC------------ATGGATGTGGATGTGCCCAAAAATAA
droWil2	scf2_1100000004540:1212772-1213087 -		ACGA--------A-ATCACAG---------A------AATAGA---------------------------CAT--------------------------------------------------------------------------------GGATGAGAAGGAGACACATTGTAG---------------------GACGTTTGATAATGAACCCAATGCTC---TT------------------------GAGC------------------------------AAAT---------------------------AAAAACATTCAACTTGAACGTAAAAGTACAGCAGGAGGATGAGGAGGAGGAGGAGGATGAGGAGCAGCGACTGAAGGAGAAGGAAGCGCTAGCCAAA------------------GGTGTTGGCGAGCAAAAAATGGAAATTGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGGCGGC------------------------------------------------------AGCAG---AGACAC------GACGATG------ATCATTGCT------AC------------------------------------GA---------------CTACAGCGTCGACGCC------------ATGGAT------GTGGCCAAAAATAA
droVir3	scaffold_13049:5276501-5276804 +		ACATGCCTTTGCC------------------TGTTGA------------------------------------T-------GCT---------GTCAATGATAATGATGATGATGCTCA--------------TCATCATGATGATGT-----TGATGATGATGATGTACGG---ATGG------------------CGGCATTTGATAATGAACTCAACGCTC---GC------------------------GAGC------------------------------A---------------------------------AACATTAAACTTGAACGTGGAA------------------------------------------------------------------GCCGAAGGCGTTGTCGTTGT------CGTTGGCGAGC---TAAAGGAAATTGAGCAGCAACAGGCGGAAAATTTTAATGACGCCTTCGGGT------------------------------------------------------------GG---CGACAT------GACAATA------ACAACAACA------ACAACAACAACAACAACAA------------------TAG---------------C---GATGGCGACGCC------------ATGAAT------ATGGCCAAAAATAA
droMoj3	scaffold_6680:3641036-3641381 +		ACATGGATTCGCA-GCGGAC-----------AGTTGA------------------------------------T-------GCT---------GACAATGACAATGATGATGATGA---TCTCAATGG-----TCATCGCGATGATAA-----TAATGTTGATGATGTACAT---AAGG------------C------GGCATTTGATAATGAACTCAACGCTC---AC------------------------GAGC------------------------------A---------------------------------AACATTAAACTTGAACGTCGAA------------------------------------------------------------------ATTGAA------------------GGCGTTGGCGAGC---GAAAGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTTGGGT------------------------------------------------------------GG---CGACAC------GACAACA------ACAACAGCA------ACAGCAAGAACAACAGCAACATCAACAATGAGAACAACAACAACGAAGGCAACGTCGACGACGACGACGCC------------ATGAATGCTGGTAATGCCAAAAATAA
droGri2	scaffold_15110:13710793-13711075 -		ACATGGATCTGTATATGGATATGAATGTGGATGTGGATGTTG------------------ACGA---TGATGAT-------GA------------------------TG-------------------------------------------ATGATGATGGTGATGTACAT---AAGT---------------CGACGGCATTTGATAATGAACTCAATGATC---AC------------------------GAAC------------------------------A---------------------------------AACATTAAACTTGAACGTGGGA---------------------------------------------------------------CAAGCTGAAGGCG---------------TTGTTGGCGTAC---AAAAGGAAATCGAGCATCAACCGGCGGAAAATTTTAATGACGCCTTTGGGT------------------------------------------------------------GG---CGACAC------GACCACA------AGAACAACA------ACA------------------------------------ACAACGAA------------GGCAACGACGAC------------GTGGGT------ACTGCCAAAAATAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACAA--------A-ATAGACG---------A------AATAGATGGAGGAGGCGG---AGGCGG---AGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACCCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGACGGCA------GAAGCACTCCCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................GTGTACAT---AAGG------------TGCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GG------------TGCCGCCGATGCTTGATAATGAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATGG------------------------------------------A------GG---AGGCGG---AGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACCCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGACGGCA------GAAGCACTCCCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................GAGC------------------------------AGACGGCGACGGCA------GAAG...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0

dm3

ACAA--------A-ATAGACG---------A------AATAGATG---------T---AGGCGG---AGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGTTTGATAATGAACCCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGGCGGCA------GAAGCACTCTCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGCC------------ATGGAT------GGGGCCAAAA....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------GCAAGGGAAATCGAGCATCAACA...................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GAGC------------------------------AGACGGCGGCGGCA------GAA....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGGCGGAAAATCTTAA....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGA..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCGAGCATCAACAGGCGGAAAATC........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATCAACAGGCGGAAA...........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------..............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGAC.................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC---------------------------------------------------------AGCGG---CGACAC------GACC.....................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACGACGCC------------ATGGAT------GGGGCC........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCG.............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGC..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................G------------------------GAGC------------------------------AGACGGCGGCGGCA------GAA....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCC------------ATGGAT------GGGGCCAAA.....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACAA--------A-ATAGACG---------A------AATAGATGGC------GG---AGGAGG---AGGAGGA-------GC-------------------------------------------------------------------------------CGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACCCGAGGACG---AG------------------------GAGC------------------------------AGACGGCGGCGACA------GAAG------CATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGCC------------ATGGAT------GGGGCC........	21	1	1.00	1	1	0	0	0	0	0	0
.......................................................................GGA-------GC-------------------------------------------------------------------------------CGGTGTACAT---AAGG------------TGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------.........................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0

droYak3

ACAA--------A-ATAGACG---------A------AATAGATGGC------GC---AGGTAGAGAAGGAGGA-------GC-------------------------------------------------------------------------------TGGTGTACAT---AAGG------------TGCCGCCGATGCTTGATAATGAACTCGAGGCCG---AG------------------------GAGC------------------------------AGACGGCGGCGGCAGAGGCAGAAGCATTCGCATTCGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AAACC---------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GTGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CG...................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................GAACTCGAGGCCG---AG------------------------GAGC------------------------------AGA........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCATCAACAGGCGGAAAATC........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCC---------------------------------------------------------AGCGG---CGACAC------GACC.....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

ACGG------------------------------------------A------G------GCGG---CGGAGGATTGGGTAGC-----------------------------------------------------------------------------AGTGGTGGACAT---AAGG------------TGCCGCCAATGTTTGATAATGAACTCGAGGCCG---AA------------------------GAGC------------------------------GACCGGCGGCGGC------------------AGAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AGCGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GAGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGA--------G-ATCAGCG---------G------CGCCGG---CGGA---GGAGGAGGTGG---AGGAGGC-------AC-------------------------------------------------------------------------------TGCTGTACAT---AAGG------------TGCCGCCGATGTTTGATAATGAACTCGAGGCCG---AG------------------------GAGC------------------------------AGGCGACGACGTCG------GA---------GGAGGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGAG---------------------------------------------------------AGAGG---CGACAC------GACCACAGCCGCAAA------------------------------------------------------------------------AACGACGACGCCATTACCATTACCATGGGG------GAGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------CG---------A------AATAAATGGA------G---------------GAGGA-------GC----------------------------------------------------------------------------AAGTGGTGTACAT---AAGG------------TGCCGCCGATGTTTGATAATGAACTCGAGGTCG---GG------------------------CA------------------------------------------AGAA------GAGGGTGAGGCTTTCACATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGGG---------------------------------------------------------AGAAG---CGACACAACTACGACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATTAGCGCGGATTTGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AA--------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGTGTACAT---AAGGCGGTGGTGCTGCTACTACCGACGGTTGATAATGAACTCGAGGGCG---TA------------------------CAT---------------------------------------GCGGT------------------AGAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------AAAGG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACGG------------------------------------------C------G---------------GAGG-----------------------------------------------------------------------------------------AGGTGTACAT---AAGG------------TGCTAGCGATGTTTGATAATGAACTCGAGGCCG---AG------------------------GAGC------------------------------GTTCGGCGGCAGCA------GAGGCAGAGGCAAAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCGTCGGCA---------------------------------------------------------AGCAG---CGACAC------GACCACA------AA------------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GGGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAG------------------------------------------C------G---------------A-------------------------------CAGCGATATA----------------------------------------------------CATGCACAT---AAGG---------------------TGTTTGATAATGAACTCGAGGCCG---AG------------------------GA---------------------------------------------------------------AGAAGCATTAAACTTGAACGT----------------------------------------------------------------------------------------------------G--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCCAGAAGC------------------------AGAAGCAGAATCA---------------GAAGCGACGAAAC---GACGACCACA------AAATC---------------------------------------------------------------------AACGACGACGCC------------ATGGAT------GTGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACGG------------------------------------------A------G---------------GAGGA-------GG-------------------------------------------------------------------------------CAGTGTACAT---AAGG---------------------TGTTTGATAATGAACCCGAGGCCG---AG------------------------AGGA------------------------------GGGCAACGACGACGAAG---GC---------GGCAGCATTAAACTTGAACGTGG----------------------------------------------------------------------TGGA------------------GGCGGTG--------GCGAAGGAAATCGAGCATCAACAGGCGGAAAATCTTAATGACGCCTTCGGCC---------------------------------------------------------A---G---CGACAC------GACCACA------AAGGCAGAG------TC---------------------------------------------------------AGCGACGACGCC------------ATGGATGTGGATGTGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACAT------------------------------------------A------G---------------AAGG--------------------------------------------------------------------------------TGGTGCCGATGATGTACAT---AAGG---------------------CGTTTGATAATGAACTCGAGGCTG---ATGGCGATGATGG---------CGCTGAGTGGCGGGTGGATGTGGAGGTGGAGGTGG---A---GGCGGCAGCA------GC---------AGCAGCATTAAACTTGAACGCCACC--------------------------------------------------ATA-GAGGTGGCG----------------------------CTGGTG--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGTCCGATTCCGAGTCCGAATCCGAGTCCGAGTCAGAATC---ATCA---------GA---AGCTA---CTACAC------GACCACA------AAAACAGAACCAGTAGAATTAGAGATAATCG--------------AGAAAAACAA-------------------AATGACGACGCC------------ATGAAT------TTGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................TGGATGTGGAGGTGGAGGTGG---A---GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................CGATGATGG---------CGCTGAGTGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...T------------------------------------------A------G---------------AAGG--------------------------------------------------------------------------------TGGTGCCGATGATGTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAATCCGAGTCCGAG..........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................GGTGGATGTGGAGGTGGAGGTGG---A---.......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................GGTGGATGTGGAGGTGGAGGTGG---A---G......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAGTAGAATTAGAGATA.................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................GATGTGGAGGTGGAGGTGG---A---GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCGGTCCGATTCCGAGTCCG........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................GGATGTGGAGGTGGAGGTGG---A---GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................GTGGATGTGGAGGTGGAGGTGG---A---G......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTAGAATTAGAGATA.................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---AGCTA---CTACAC------GACCACA------............................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGAAATCGAGCT.........................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................GTGG---A---GGCGGCAGCA------GC---------AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................GGTGGATGTGGAGGTGGAGGTGG---...........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................TGGAGGTGGAGGTGG---A---GGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................GGAGGTGGAGGTGG---A---GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.18	3	0	0	0	0	1	2
.............................................................................................................................................................................................................................................................................TGGAGGTGGAGGTGG---A---GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................GTGGAGGTGGAGGTGG---A---GG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	2

droBip1

ACAT------------------------------------------A------G---------------AAGG--------------------------------------------------------------------------------TGGTGGCGATGATGTACAT---AAGG---------------------CGTTTGATAATGAACTCGAGGCTGGCCACGGCGATGATGATGAGTGGGATGATGAGCGGCG---------------------------GGC------AGCG------GC---------GGTAGCATTAAACTTGAACGCCACC--------------------------------------------------GTA-GAGGTGGCG----------------------------CTGGTG--------GCAAGGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGTCCGAGTC------------------------AGAATCTGTATCAGGAGAAGGAGAAGCAAAAG---CTACAC------GACCACA------AAAACAGCA------GAATCGGGGAAAACAG--------------AGAAAAACAA-------------------AATGACGACGCC------------ATGAAT------TTGGCCAAAAATAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACACGGATCCGCA-ATGGAC--------------------------------------AGGCGG---AGAAGGT-------GCTGCCGCTGCCGCCTCCGCTGCCGCCGCCGCTGCT-GTCTCCGTGAACGCC---------------ACAAATGATGATGATGATGTACAT---AAGG---------------------TGTTTGATAATGAACTCGAACCTC---AT------------------------GGGCGTCGG------------------CCGGGGGAGAC------AGCA------GC---------AGCAACATTAAACTTGAACGTGCCC---------------------------------------------------------------------GATGCCGATGCCGATGCCGAAGGTGTTGGCGAGC---AGAAGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGCC---------------------------------------------------------A---G---CGACAC------GACCACA------ACGACAGCG------AC------------------------------------GG---------------CGACGGCGACTACGCC------------ATGGATGTGGATGTGCCCAAAAATAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................CAAATGATGATGATGATGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................GCT-GTCTCCGTGAACGCC---------------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................GTACAT---AAGG---------------------TGTTTGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................CGAACCTC---AT------------------------GGGCGTCGG------------------CC................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCTTCGGCC---------------------------------------------------------A---G---CGACAC------G........................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCTTCGGCC---------------------------------------------------------A---G---CGAC.................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................CTCGAACCTC---AT------------------------GGGCGTCGG------------------CC................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

ACACGGATCCGCA-ATGGAC--------------------------------------AGGCGG---AGAAGGT-------GCT---------GCCACCGCC----------------------------------------------ACAAATGATGATGATGATGTACAT---AAGG---------------------TGTTTGATAATGAACTCGAACCTC---AT------------------------GGGCGTCGG------------------CCGGGGGAGACAGCAGCAGCA------GC---------AGCAGCATTAAACTTGAACGTGCCC---------------------------------------------------------------------GATGCCGATGCCGATGCCGAAGGTGTTGGCGAGC---AGAAGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGCC---------------------------------------------------------A---G---CGACAC------GACCACG------ACCACAACG------ACAGCGAGAACGACGGCGA------------------CGG---------------CGACGGCGACTACGCC------------ATGGATGTGGATGTGCCCAAAAATAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAACG------ACAGCGAGAACG.................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................TGAACTCGAACCTC---AT------------------------GGGCGTCGG------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1

droWil2

ACGA--------A-ATCACAG---------A------AATAGA---------------------------CAT--------------------------------------------------------------------------------GGATGAGAAGGAGACACATTGTAG---------------------GACGTTTGATAATGAACCCAATGCTC---TT------------------------GAGC------------------------------AAAT---------------------------AAAAACATTCAACTTGAACGTAAAAGTACAGCAGGAGGATGAGGAGGAGGAGGAGGATGAGGAGCAGCGACTGAAGGAGAAGGAAGCGCTAGCCAAA------------------GGTGTTGGCGAGCAAAAAATGGAAATTGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTCGGGCGGC------------------------------------------------------AGCAG---AGACAC------GACGATG------ATCATTGCT------AC------------------------------------GA---------------CTACAGCGTCGACGCC------------ATGGAT------GTGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................TTGTAG---------------------GACGTTTGATAATGAACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
..............................A------AATAGA---------------------------CAT--------------------------------------------------------------------------------GGATGAGAAGGAGACACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
........................................AGA---------------------------CAT--------------------------------------------------------------------------------GGATGAGAAGGAGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------GACGATG------ATCATTGCT------AC------------------------------------GA---------------CT....................................................	23	1	1.00	1	1	0	0	0	0

droVir3

ACATGCCTTTGCC------------------TGTTGA------------------------------------T-------GCT---------GTCAATGATAATGATGATGATGCTCA--------------TCATCATGATGATGT-----TGATGATGATGATGTACGG---ATGG------------------CGGCATTTGATAATGAACTCAACGCTC---GC------------------------GAGC------------------------------A---------------------------------AACATTAAACTTGAACGTGGAA------------------------------------------------------------------GCCGAAGGCGTTGTCGTTGT------CGTTGGCGAGC---TAAAGGAAATTGAGCAGCAACAGGCGGAAAATTTTAATGACGCCTTCGGGT------------------------------------------------------------GG---CGACAT------GACAATA------ACAACAACA------ACAACAACAACAACAACAA------------------TAG---------------C---GATGGCGACGCC------------ATGAAT------ATGGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........TTGCC------------------TGTTGA------------------------------------T-------GCT---------GTCAATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------GCCGAAGGCGTTGTCGTT...............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATGAACTCAACGCTC---GC------------------------GAGC------------------------------A---------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---TAAAGGAAATTGAGCA.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AACGCTC---GC------------------------GAGC------------------------------A---------------------------------AACATTAAAC...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AATGATAATGATGATGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................ATGATAATGATGATGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................GATGATGT-----TGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA------ACAACAACA------ACAACAACAAC..................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACATGGATTCGCA-GCGGAC-----------AGTTGA------------------------------------T-------GCT---------GACAATGACAATGATGATGATGA---TCTCAATGG-----TCATCGCGATGATAA-----TAATGTTGATGATGTACAT---AAGG------------C------GGCATTTGATAATGAACTCAACGCTC---AC------------------------GAGC------------------------------A---------------------------------AACATTAAACTTGAACGTCGAA------------------------------------------------------------------ATTGAA------------------GGCGTTGGCGAGC---GAAAGGAAATCGAGCATCAACAGGCGGAAAATTTTAATGACGCCTTTGGGT------------------------------------------------------------GG---CGACAC------GACAACA------ACAACAGCA------ACAGCAAGAACAACAGCAACATCAACAATGAGAACAACAACAACGAAGGCAACGTCGACGACGACGACGCC------------ATGAATGCTGGTAATGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ACATGGATCTGTATATGGATATGAATGTGGATGTGGATGTTG------------------ACGA---TGATGAT-------GA------------------------TG-------------------------------------------ATGATGATGGTGATGTACAT---AAGT---------------CGACGGCATTTGATAATGAACTCAATGATC---AC------------------------GAAC------------------------------A---------------------------------AACATTAAACTTGAACGTGGGA---------------------------------------------------------------CAAGCTGAAGGCG---------------TTGTTGGCGTAC---AAAAGGAAATCGAGCATCAACCGGCGGAAAATTTTAATGACGCCTTTGGGT------------------------------------------------------------GG---CGACAC------GACCACA------AGAACAACA------ACA------------------------------------ACAACGAA------------GGCAACGACGAC------------GTGGGT------ACTGCCAAAAATAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_26075

3l:1524503-1524652 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-44.9	-44.7	-44.7