ID:

dsi_26039

 Coordinate:

3r:4455975-4456124 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.9 -46.7 -46.7

Flybase annnotation

CDS [3r_4456125_4456304_+]; exon [3r_4456125_4456304_+]; intron [3r_4455045_4456124_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCACTCCGATTCGTTGGCATTGCCAGACGCTCTGGCGTCGCGGAGAATCAATGGGCGGACATGGGCGATGTGATTGTGGGTGATATCATGGGCGATGGGCTGATCAGGGCACTTTGTATGCGGGCCCGGCTGACGGGCAGTGGTTCTTTCGCACGCCTCCTGCCTAACTAATTGGGTCTGATGCCTCCGTCTATTTATAGTGGCGCTGTTCGCCCTCTCGCTGGTCCAGTGCCTCGGCCTGCCCGATCCC
**************************************************(((((((((....((((((((.(((...))).)))))....((((...(((......)))...))))...(((((((((.....((((((.(((..........)))..))))))......)))))))))..))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body
..........................................................................................................................................................................ATAGGGTCTGACGCCT................................................................ 16 2 7 1.29 9 0 7 0 0 2 0 0 0
..................................................................GATGTGATTGTGGGTGAT...................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................ACGTATAGGGTCTGATGCCT................................................................ 20 3 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................TGGGCGACGGGGTGATAAGGGC............................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................TGGGCAAAGCGCTGATCAGGGC............................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................CGATGTGATTGTGGGTGATATCAA................................................................................................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0
........................................CGGAGAATCAATGGGCGGACA............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................TGGACGGTGTGCTGATCAGGGC............................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................TGGGCGGAGGACTGATCAGGGC............................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................TGGACGGTGGACTGATCAGGGC............................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................ACTGATGCCTCCGTGTA......................................................... 17 2 5 0.20 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................TATAGGGTCTGACGCCT................................................................ 17 3 20 0.20 4 0 4 0 0 0 0 0 0
.......................................................................................................................................................................................................GTGGCGCTGTTGCCCGTCTCG.............................. 21 3 6 0.17 1 0 0 1 0 0 0 0 0
.................................................................CGATGTGATAGTGGGCGA....................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0
...............................................................................................AGGACTGATCAGGGCATTTT....................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0
..................................................................................................................TATGTGCGGGCCCGGCT....................................................................................................................... 17 2 11 0.09 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................ATGGTTGGGCTGTTCGCCC................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
...............................................................GGGGATGGGATTGTGGGT......................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

CGTGAGGCTAAGCAACCGTAACGGTCTGCGAGACCGCAGCGCCTCTTAGTTACCCGCCTGTACCCGCTACACTAACACCCACTATAGTACCCGCTACCCGACTAGTCCCGTGAAACATACGCCCGGGCCGACTGCCCGTCACCAAGAAAGCGTGCGGAGGACGGATTGATTAACCCAGACTACGGAGGCAGATAAATATCACCGCGACAAGCGGGAGAGCGACCAGGTCACGGAGCCGGACGGGCTAGGG
**************************************************(((((((((....((((((((.(((...))).)))))....((((...(((......)))...))))...(((((((((.....((((((.(((..........)))..))))))......)))))))))..))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..................................................................................................................................................................GGATTGAATAACCCAGATTA.................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................AAGGAGTGCGGAGGACGG...................................................................................... 18 2 4 0.50 2 1 0 0 0 1 0 0
.........................................................................................................................................................................ACAAACCAGACTACGGAGGCA............................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0
.................................................................................................................................................................................GACTACGGGGGCTGATA........................................................ 17 2 15 0.27 4 0 0 1 2 0 0 1
.....................................................................................................................................................................................................................GGAGAGCGAGCTGGTCAC................... 18 2 8 0.25 2 0 0 2 0 0 0 0
...........................................................................................CGGTACCCAACTAGTCTCGT........................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGTCAGGGAGCCGG........... 15 1 17 0.12 2 0 0 0 2 0 0 0
...............................................................................................................................CCGACTGCCCGCCACTA.......................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 1 0
................................................................................................................................................................................AGACTACGGAGACAG........................................................... 15 1 17 0.06 1 0 1 0 0 0 0 0
...................................................................................................................................................AAGACTGCGGAGGACGAAT.................................................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................ACCAGGTCACGCAGC.............. 15 1 19 0.05 1 0 0 0 1 0 0 0

Generated: 04/24/2015 at 08:12 AM