ID:

dsi_26032

 Coordinate:

3l:15962977-15963218 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -39.0 -39.0

Flybase annnotation

CDS [3l_15962794_15962976_-]; exon [3l_15962361_15962976_-]; CDS [3l_15963219_15963614_-]; exon [3l_15963219_15963621_-]; intron [3l_15962977_15963218_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCAAGCAAAAATTGGCCAGCTGCGGAGCTCCAGGAGTTGTGTCCGTTTCGGTGGGTTTTATAAATCGATTTGTGAAAAATATAATCTATATATGTAAGTCCGACTGCTTTTAAAGTTTAAAGGACTTCGAGATGACCATATAGATATGACAAAATTTAAATGATTTTTGTTGATAATAATTCATTCAAATTGTTAAGTAGTTTTCTAACAGGAGTTTTTAAAAAAATATATTTTCATACCTTTGAACGTCATAATATTGGAAAGCTAATAAACTTTTTGTTACCATTTCTAGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGATACGAGCAAGTA
**************************************************((((.(((((((((....))))))))).......(((((((..((..((((((...(((((((...)))))))...))).))).)).)))))))((((((....((((((.((((((((((((((((((((......))))))))........)).))))))))))))))))..........((((......)))).)))))).((((((....))))))(((.....))).))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................................................................................................................................................................................................ATTTCTAGGCTGGAAAAGC....................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GCTGGAAACGCCGCAGC................................. 17 1 2 1.50 3 0 3 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GCCGCAGCTGCCGTGGATCGATTG................. 24 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................GTTTAAAGGACTTCGAGATGACCAT........................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................TGTAAAGGACTTCAATATGACCA............................................................................................................................................................................................................ 23 3 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................AGTAGTTTTCTAACAGGGGT............................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TGTTGATAATAATTCTTC............................................................................................................................................................. 18 2 15 0.87 13 0 0 0 0 13 0 0
....................................................................................................................................................................................................................................................................................................GCTGGAAAAGCCGCAG.................................. 16 0 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................ATCGGTTGACGGAGACGA....... 18 2 3 0.33 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................GCTGGAAACGCCGCAGCTC............................... 19 2 5 0.20 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GCTGGAAACGCCGCAGGTG............................... 19 2 5 0.20 1 0 1 0 0 0 0 0
........................................................................................................................................................AATATAAATGATTGTAGTTGAT........................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 1 0 0 0
.......................................................................................................................................................................TGTTGATAATAATTCTT.............................................................................................................................................................. 17 1 5 0.20 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TATCGGGAGGTTTTAAAAAA..................................................................................................................... 20 3 11 0.18 2 0 0 0 0 0 1 1
..................................................................................................................................................................ATTTTTGTTGAAAATAATT................................................................................................................................................................. 19 1 8 0.13 1 0 0 0 0 0 1 0
..........ATTTGCCAGCTGCGGA............................................................................................................................................................................................................................................................................................................................ 16 1 10 0.10 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GCCGTGTATCGTTTGACCG............. 19 3 11 0.09 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................TGAAAGGCTAATAAACTT................................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0
........................................................................................................................................................................GTTGATAATAATTCTTC............................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................................GTGTTGATAATAATTCT............................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................TAGGAGCTTTTAAAAAAA.................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................................GTAGGCTGGAAACGCC...................................... 16 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

AGTTCGTTTTTAACCGGTCGACGCCTCGAGGTCCTCAACACAGGCAAAGCCACCCAAAATATTTAGCTAAACACTTTTTATATTAGATATATACATTCAGGCTGACGAAAATTTCAAATTTCCTGAAGCTCTACTGGTATATCTATACTGTTTTAAATTTACTAAAAACAACTATTATTAAGTAAGTTTAACAATTCATCAAAAGATTGTCCTCAAAAATTTTTTTATATAAAAGTATGGAAACTTGCAGTATTATAACCTTTCGATTATTTGAAAAACAATGGTAAAGATCCGACCTTTTCGGCGTCGACGGCACCTAGCTAACTGCCTATGCTCGTTCAT
**************************************************((((.(((((((((....))))))))).......(((((((..((..((((((...(((((((...)))))))...))).))).)).)))))))((((((....((((((.((((((((((((((((((((......))))))))........)).))))))))))))))))..........((((......)))).)))))).((((((....))))))(((.....))).))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
.................................................................................................CAGGTTGACGACAATTGCA.................................................................................................................................................................................................................................. 19 3 12 0.50 6 6 0 0 0 0
............................................................ATTTTGCTAATCAATTTTTATAT................................................................................................................................................................................................................................................................... 23 3 8 0.38 3 0 3 0 0 0
..................................................................................................................................................................................................................................................................CCTTTCGATTTTTTGA.................................................................... 16 1 9 0.11 1 0 0 0 1 0
.................TCGACGTCTCGAGGT...................................................................................................................................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 2 0 0
...................................................................................................................................................................................AAGTAAGTTGAACAAT................................................................................................................................................... 16 1 14 0.07 1 0 0 1 0 0
.................................................................................................................................................................................................................................................................................AAAAAAAATGGTGAAGATGCG................................................ 21 3 16 0.06 1 0 0 0 0 1

Generated: 04/23/2015 at 11:40 PM