ID:

dsi_26029

 Coordinate:

3r:6297872-6297992 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3r_6297993_6298290_-]; CDS [3r_6297993_6298064_-]; exon [3r_6297381_6297871_-]; CDS [3r_6297381_6297871_-]; intron [3r_6297872_6297992_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------##################################################
TAAATATACTTCAGTCGCAAAAAGCCACCGTCTTCTCAGCAAGTCAACAGGTAAACAAATAATTTTTGTTATAAAAACAGTGGCAATTCACGAGTAATTTGAAATGAGAATATACAATAATGTGTATGTTAACGTGAAAAATACCTAACACTTGATTGGATCACTTTCCAGCGTTGGCAGACAAATGTGGCAACAGCTGAGATCAGAAACGATCCGGAATG
**************************************************...((((((.....)))))).........((((....))))..(((.(((...(((..((((((((......))))))))..)))..))).)))...........(((((......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................TGAGATCAGAAACGAT........ 16 0 1 1.00 1 0 1 0 0
............AGTCGCAAAAAGCCACCG............................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0
.......ACTTCAGTCGCAAAAAGC.................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
...ATATACTTCAGTCGCAAAAAGC.................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................GCAACAGCTGAGATCAGAAACGATCCGGG... 29 1 1 1.00 1 0 0 1 0
.....ATACTTCAGTCGCAAAAAGC.................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
............................................................................................................................TATGTTAGCGAGAAAAA................................................................................ 17 2 20 0.05 1 0 0 0 1
......................................................................TTAAAAACAGTGGCA........................................................................................................................................ 15 1 20 0.05 1 0 1 0 0

Anti-sense strand reads

ATTTATATGAAGTCAGCGTTTTTCGGTGGCAGAAGAGTCGTTCAGTTGTCCATTTGTTTATTAAAAACAATATTTTTGTCACCGTTAAGTGCTCATTAAACTTTACTCTTATATGTTATTACACATACAATTGCACTTTTTATGGATTGTGAACTAACCTAGTGAAAGGTCGCAACCGTCTGTTTACACCGTTGTCGACTCTAGTCTTTGCTAGGCCTTAC
**************************************************...((((((.....)))))).........((((....))))..(((.(((...(((..((((((((......))))))))..)))..))).)))...........(((((......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
...............................................................................................................................................GGATTGTGACCTAAACTAG........................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0
.........................CTGGCAGAAGAGTCG..................................................................................................................................................................................... 15 1 3 0.67 2 0 0 0 2 0 0 0
.........................................................................................................................................................................................................TAGTCTTTACTAGGCGTTAG 20 3 7 0.43 3 3 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGTCTTTACTAGGCGTTA. 19 2 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................................AAGGATTGTGAACTAA................................................................ 16 1 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................AGTCTTTACTAGGCGTTAG 19 3 20 0.25 5 4 0 0 0 0 0 1
..........................TGGCAGAAGAGTCGC.................................................................................................................................................................................... 15 1 4 0.25 1 0 1 0 0 0 0 0
...........................................................ATTAAATAAAATATTTTTGTTACC.......................................................................................................................................... 24 3 5 0.20 1 0 0 0 0 1 0 0
..........................................................................................................................................TTAAAGGATTGTGAACTAA................................................................ 19 2 6 0.17 1 0 1 0 0 0 0 0
.....................................................................................................................................................................AAGGTCCCAACCGTC......................................... 15 1 14 0.14 2 0 0 0 0 0 2 0
.......................AGCTGGCAGAAGAGTCG..................................................................................................................................................................................... 17 2 10 0.10 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................TGGTGGACTCTAGTCT.............. 16 2 20 0.10 2 0 2 0 0 0 0 0
......................TCGGTGTCAGAAGAATCGTC................................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................ACCCCCTTGTCGGCTCTAG................. 19 3 18 0.06 1 0 1 0 0 0 0 0
..............................................................................................................................................................CGAGTGATAGGTCGCA............................................... 16 2 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:6297822-6298042 - dsi_26029 TAAATATACTTCAGTCGCAAAAAGCCACCGTCTTCTCAGCAAGTCAACAGGTAAACAAAT-----AAT---------------T-TTTG--TTATAAAAACAG--------------------------TGGCAATTCACG-----------------------AG---------------------------------------------------------------------------TAATTTGAAATGAGAATATACAATAAT--------------------------GTGT--------ATGTTAACGTGAAAAATACCT------------------------------------------------------A----------------------------------ACACTTGATTGGAT--CA-CTTTCCAGCGTTGGCAGACAAATGTGGCAACAGC------------------------------TGAGATCAGAAACGATCCGGAATG
droSec2 scaffold_25:799947-800167 - TCAATATACTTCAGTCGCAAAAAGCCACCGTCTTCTCAGCAAGTCAACAGGTAAAAAAAT-----AGT---------------T-TTTG--GTATAAAAACAG--------------------------TGGCAATTTGCG-----------------------AA---------------------------------------------------------------------------TAATTTGAAATGAGAATATACAATAAT--------------------------GTGT--------ATGTTTACATGAAAAATACCT------------------------------------------------------A----------------------------------ACTCTTGATTGGAT--CA-TTTTTCAGCGTTGGCAGACAAATGTGGCAACAGC------------------------------TGAGATCAGAAACGATCCGGAATG
dm3 chr3R:14958429-14958661 + TTAATATACTTCAGTCGCAAAAACCCATCGTCTTCTCTGCAAGTCAACAGGTAAACAAATAATAA-GG---------------T-TTTG--GTATAAAAACAG--------------------------TGGCAATTTACG-----------------------AA---------------------------------------------------------------------------TAAATTGAAATGAGAATATACAATAAT--------------------------GTGTATATGTTTATGTTTACATGAAAAATACAT------------------------------------------------------A----------------------------------ACTCTTGATTGGAT--CA-TTTTCCAGCGTTGGCAGACAAATGTGCCAACAGC------------------------------TGAGATCAGAAACGATCCGGAATG
droEre2 scaffold_4770:6668180-6668341 - TAAATATTCTTCAGTCGCAAAAAGCCAGCGTCTTTTCTGCAAGTCAACAGGTAAACAAT-----------------------------------------------------------------------------TTACG-----------------------AA---------------------------------------------------------------------------CAACTTTAAATGAGA----------------------------------------------------------------AATACCT------------------------------------------------------AG----------------------------------T-TATACTTGGAT--CA-TGTTTCAGCGTTGGCAGACAAATGTGGCAGCACC------------------------------TGAGATCAGAAGCGATCCGGAATG
droYak3 3R:3641744-3641984 + TAAATATTCTTCAGTCGCAGAAAACCACCGTATTTTCTGCAAGTCAACAGGTAAACAAAC-----ATT---------------GTTTTA--CTATAAAAATAG--------------------------AGCCAATCGACG-----------------------AA---------------------------------------------------------------------------ACATTCTAAATGAGAATATATA-----CATAT-TCAATATATAAATATATAATATGT--------GTGTTTACATA-AAAATACCT------------------------------------------------------A----------------------------------TTTTATTATTGCAT--CA-TGTTTCAGCGATGGCAGACAAATGTTGCAACAGT------------------------------TGAGATCAGAAACGATCCGGAATG
droEug1 scf7180000409804:1207735-1207994 + TTATTATTCAACAGTCGCAAAAAGCGTCTCTCTTCTCTGCCAGTCAGAAGGTAAACAAAT-----ACT---------------T-TTTA--TTACCAA--------CAAAGAA-------TGTAAGGAAA------------AGGGTTTAACAGGCAGATTAATAGTAAGAA---------------------------------------------------------------------ATTTTCTAAA-----AGGTTGA-----GAACTATCA---------------------------------------------A-----TATGGT------------------------------------------------GTTACATTATTATAAAGTATAAATATATATA---TATATAAAATAAAA--TA-TATTTCAGCGTTGGCAGGCTAATGTGGCAGCAGC------------------------------TGAGCCAAGAGATGACCAGGAATG
droBia1 scf7180000302402:716304-716576 + TAATAATACAACGGTCTCAGAAGGCGGCTCTCTTTTCTGCTAGTCAACAGGTAAACAAAT-----AGT---------------C-TTTA--CAATAAAAAT---------CAAATAAAAATGAAAT-AAA------------AGCGTTATAAAGGCAAGTTCAGAG---------------------------------------------------------------------------TAATTGTCAATGAGAAGAGAGA-----TAGATATCAATATTTATATAAATTTTA-GC--------GTGTTCCCATTATCTTTATCT------------------------------------------------------A-----------------------------TATAATCTCATTACTGGAC--TA-TATTCTAGCGCTGGCAGACAAATGTGGCCGCAGC------------------------------CGAGGTCAGAGACGACCCAGAATG
droTak1 scf7180000415256:457733-457945 + TAGTAATACAACAGTCGCACAAAGCGGCCCTCTTTTCTGCCAGTCAACAGGTAAACAAAT-----AGG---------------G-GTT--TAT-------TACAAGCAATGAAATAAAAATA--AT-AA--------------------------------------AAAGTATTTTTCAATGGAGAATAATAAGTCCCATAAATT-----------------------------------------------------------------------------------------------------------------AAAT---------------------------------------------------------------------------------------------TCCTATTATTTAAC--TA-TATTTTAGCGCTGGCAGACAAATGCGGCCACAGC------------------------------TGAGGTCAGAGAAGATCCGGAATG
droEle1 scf7180000490994:722074-722294 + TAGTTATACTACAGTCGCAAAAAGCGGCTCTCTTTTCGGCCAGTCAACAGGTAAACCAAT-----ATT---------------G-TTT--CA-------ACATTAACA--------------------------ATACAAT-----------------------AA---------------------------------------------------------------------------CAATTCTAAAAGAGGAGAAAAAATTGT--------------------------G-----------------------------------------------------------ATGGAAAAAGAAATTTAGTTGTGCAC--------------------------------AGAATCTCATAGTTTGAATATA-TTTTATAGCGATGGCAGACAAATGTGGCTGCAGC------------------------------TGAGATCAGAGACGATCCAGAATG
droRho1 scf7180000777405:118298-118529 - TCTCATTAATTCAATCGCAAAAAGCGATTCTAACGCTCGGTTCTCAAAAGGTAAC-AAGTACTAA-GT----ATCAA--------------GAATT---------------AA-------T-------------------CTAGGAACTACTAGGCGGTTT--------------ATCAAGTGGAGTTTTCT------------TTACGGTGCCATTATTCACCATTGGCGAGCAAACAAAGCAATCAAAACGAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TA-TATTTCAGCGCTGGCAAACTAGTACGGCATCGGC------------------------------TGAAGCTAGAGACGATCAAGAATG
droFic1 scf7180000453812:74173-74406 - TTATTATTTTGCAGTCACAAAAAGCTGCTCCCATTTTAGCCAGTCAACAGGTAAACAAAT-----GAT---------------A-TTT--CGAACC-------AAACAATGAA-------TGAAAT------------------GTTATATCTAATAGCTCATAATTAGAACATTTTCCAGTGGAGGAATTT------------ATATAATA------------------------------------------------------TT--------------------------TTAT--------TTGAATTCAGCA-----------------------------------------------------------------------------------------------------AATAATTGGTA--TA-TATTTTAGCGATGGCAAACAAATGTGGCTACAGC------------------------------TGAGATCAGAGAGGACCCCGAATG
droKik1 scf7180000300058:126922-127208 - TATATATTATTCAGTCGCAAAGAGCGGCATTCTTTTCCACCAGTCAACAGGTAAACAACA-----TAT---------------T-TTTT--ATGCAGA--------CAAAAGC-------TATAAAAACTAGGAGTTTGTT-----------------------CG---------------------------------------------------------------------------GAAATTCAAATAAAACTATGAGATAAT--------------------------AATT--------TTTCCCCCATAAGAATTACTTACATCGACTTGCTCTTTCGAAAAAATTATTCAAAAAACCATATGGCTGTGGGAAAA---------------------------------ACTTATGTTTATGA--TA-CATTCCAGCGTTGGCAGACGAATGCGGCTGCCGC------------------------------TGAAACCAGAGACGATCCGGAATG
droAna3 scaffold_13340:23440770-23440928 - TATATTTATTACAGTCGCAAAAAGCGGCTCTCTCTTCCATTAAACAAAAAGTAAATATTA-----ATT-------------CCA---TTTC--ACAAT-----AAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------TATAATAATAATAA--CG-TTTCCCAGAGGTGGCAGACAAATGTGGCAGCCAC---------------------------CAATGAAGCTCGAACCGATCCGGAATG
droBip1 scf7180000396395:444941-445100 - TATATTTGTTACAGTCGCAAAAAGCGGCTCTCTCTTCCATTAAACAAAAAGTAAACAATA-----ATA-------------CAA---TTTC--ACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCT------------------------------------------------------AA---------------------------------TAGAATAATAGAGT--GATGATTCCAGAGATGGCAGACCAATGTGGCAGCAAC---------------------------AAATGAGGCTAGAACCGATCCGGAATG
dp5 2:6901582-6901745 + TATCTATAATTCAGGCGCAAAAAGCAGCCCTCTCTGTCAGCAGTCCGCTGGTAAATATAT-----AGTATACATATAGATCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------TAT-----CACGGT------------------------------------------------GATATACGT-------------------------------TTTT-GAA--TC-TCTTGCAGCGTTGGCAGACCACAGCAGCTGTAGC------------------------------AGAGCCCAGAAATGATGAAGAGTG
droPer2 scaffold_0:757968-758131 + TATCTATAATTCAGGCGCAAAAAGCAGCCCTCTCTGTCCGCTGTCCGCTGGTAAATATAT-----AGTATACATATAGATCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------TAT-----CACAGT------------------------------------------------GATATACGT-------------------------------TTTT-GAA--TC-TCCTGCAGCGTTGGCAGACCACAGCAGCTGTAGC------------------------------AGAGCCCAGAAATGATGAAGAGTG
droWil2 scf2_1100000004585:7635388-7635507 + CAGTCATTTGTAGGTCAAAGTTA------------------------------------T-----GGTAAAAATAATGTTCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------AAC-----TTA----------------------------------------------------------------------------------------TTTCACTTACC--AT-AATTTCAGCGGTGCCAAACTAATGCAGCAACTGC------------------------------CCTTGCTCGGGATGATAATGAATG
droVir3 scaffold_13047:17449927-17450015 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TA-TTGTTCAGCGCCTGCAAACAAGTGCAGCGAGCAGCGCTCTAAATGTATCGGAAAACGAACCATCCATAGCTAGACC---TGCGGGCTG
droMoj3 scaffold_6540:5638821-5638890 - CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGCGTTGTCAAAGCACAGCAGCCGCGGT---CA---------------AGGAGTCAAGCGTTGCTAGAGATGACGTCGAGTG
droGri2 scaffold_15074:6143700-6143788 + AAATAC-TTATCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--TG-TTTTTCAGCGTTATCAGAGTACTGCCATCGCAGG---TC---------------AGAAGCCAACTGCAGCTAGAGACGATGTCGAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAAATATACTTCAGTCGCAAAAAGCCACCGTCTTCTCAGCAAGTCAACAGGTAAACAAAT-----AAT---------------T-TTTG--TTATAAAAACAG--------------------------TGGCAATTCACG-----------------------AG---------------------------------------------------------------------------TAATTTGAAATGAGAATATACAATAAT--------------------------GTGT--------ATGTTAACGTGAAAAATACCT------------------------------------------------------A----------------------------------ACACTTGATTGGAT--CA-CTTTCCAGCGTTGGCAGACAAATGTGGCAACAGC------------------------------TGAGATCAGAAACGATCCGGAATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCAGAAACGAT........1611.00100000000001000000
............AGTCGCAAAAAGCCACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.......ACTTCAGTCGCAAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...ATATACTTCAGTCGCAAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGC------------------------------TGAGATCAGAAACGATCCGGG...2911.00100100000000000000
.....ATACTTCAGTCGCAAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
droSec2
TCAATATACTTCAGTCGCAAAAAGCCACCGTCTTCTCAGCAAGTCAACAGGTAAAAAAAT-----AGT---------------T-TTTG--GTATAAAAACAG--------------------------TGGCAATTTGCG-----------------------AA---------------------------------------------------------------------------TAATTTGAAATGAGAATATACAATAAT--------------------------GTGT--------ATGTTTACATGAAAAATACCT------------------------------------------------------A----------------------------------ACTCTTGATTGGAT--CA-TTTTTCAGCGTTGGCAGACAAATGTGGCAACAGC------------------------------TGAGATCAGAAACGATCCGGAATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................AACAG--------------------------TGGCAATTTGCG-----------------------AA---------------------------------------------------------------------------T.........................................................................................................................................................................................................................................................................................2013.0030102
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC------------------------------TGAGATCAGAAACGATCC......2513.0030120
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC------------------------------TGAGATCAGAAAC...........1912.0021010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------------------TGAGATCAGAAACGATCC......2011.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTGGCAACAGC------------------------------TGA.....................1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC------------------------------TGAGATCAGAAACGAT........2211.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAATGTGGCAACAGC------------------------------TGAG....................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGCAACAGC------------------------------TGAGATCA................2111.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATGTGGCAACAGC------------------------------TGAG....................2211.0010010
.......ACTTCAGTCGCAAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..................................................................................................AACAG--------------------------TGGCAATTTGCG-----------------------AA---------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................1911.0010001
..................................CTCAGCAAGTCAACAGGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.......ACTTCAGTCGCAAAAAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................................................T---------------T-TTTG--GTATAAAAACAG--------------------------TGGC......................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
......TACTTCAGTCGCAAAAAGCCACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
............AGTCGCAAAAAGCCACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGACAAATGTGGCAACAGC------------------------------TGA.....................2611.0010010
...ATATACTTCAGTCGCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC------------------------------TGAGATCAGAAACGATCCGGAAT.2811.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATGTGGCAACAGC------------------------------TGA.....................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATGTGGCAACAGC------------------------------TGA.....................2011.0010100
dm3
TTAATATACTTCAGTCGCAAAAACCCATCGTCTTCTCTGCAAGTCAACAGGTAAACAAATAATAA-GG---------------T-TTTG--GTATAAAAACAG--------------------------TGGCAATTTACG-----------------------AA---------------------------------------------------------------------------TAAATTGAAATGAGAATATACAATAAT--------------------------GTGTATATGTTTATGTTTACATGAAAAATACAT------------------------------------------------------A----------------------------------ACTCTTGATTGGAT--CA-TTTTCCAGCGTTGGCAGACAAATGTGCCAACAGC------------------------------TGAGATCAGAAACGATCCGGAATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTGGCAGACAAATG................................................................1812.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGACAAATGTGCCAAC.........................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------------------TGAGATCAGAAACGATCCG.....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTCTCTGCAAGTCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGACAAATGTGCCAACA........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC------------------------------TGAGATCAGAAACGAT........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTTGATTGGAT--CA-TTTTCCAG................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAACAAATAATAA-GG---------------T-......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAATGTGCCAACAGC------------------------------T.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGCGTTGGCAGACAAA..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC------------------------------TGAGATCAGAAAC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CTTCAGTCGCAAAAACCCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TACAT------------------------------------------------------A----------------------------------ACTCTTGATTGGAT--CA-TTTT....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGACAAATGTGCCAA..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAAACCCATCGTCTTCTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCAACAGC------------------------------TGAGATCAGAAACGAT........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTTCTCTGCAAGTCAACAGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAAATATTCTTCAGTCGCAAAAAGCCAGCGTCTTTTCTGCAAGTCAACAGGTAAACAAT-----------------------------------------------------------------------------TTACG-----------------------AA---------------------------------------------------------------------------CAACTTTAAATGAGA----------------------------------------------------------------AATACCT------------------------------------------------------AG----------------------------------T-TATACTTGGAT--CA-TGTTTCAGCGTTGGCAGACAAATGTGGCAGCACC------------------------------TGAGATCAGAAGCGATCCGGAATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....ATTCTTCAGTCGCAAAAAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
......................AGCCAGCGTCTTTTCTGCAAGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.....ATTCTTCAGTCGCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
TAAATATTCTTCAGTCGCAGAAAACCACCGTATTTTCTGCAAGTCAACAGGTAAACAAAC-----ATT---------------GTTTTA--CTATAAAAATAG--------------------------AGCCAATCGACG-----------------------AA---------------------------------------------------------------------------ACATTCTAAATGAGAATATATA-----CATAT-TCAATATATAAATATATAATATGT--------GTGTTTACATA-AAAATACCT------------------------------------------------------A----------------------------------TTTTATTATTGCAT--CA-TGTTTCAGCGATGGCAGACAAATGTTGCAACAGT------------------------------TGAGATCAGAAACGATCCGGAATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................AAACCACCGTATTTTCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...ATATTCTTCAGTCGCAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAACGATCCGGAATG1911.00100000010000
.....................AAACCACCGTATTTTCTGCAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCAACAGT------------------------------TGAGAT..................1811.00100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAACGATCCGGAATG1811.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGCAACAGT------------------------------TGAGAT..................1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCAACAGT------------------------------TGAGATCAGAAAC...........2511.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGACAAATGTTGCAACAGT------------------------------TG......................2411.00100000010000
droEug1
TTATTATTCAACAGTCGCAAAAAGCGTCTCTCTTCTCTGCCAGTCAGAAGGTAAACAAAT-----ACT---------------T-TTTA--TTACCAA--------CAAAGAA-------TGTAAGGAAA------------AGGGTTTAACAGGCAGATTAATAGTAAGAA---------------------------------------------------------------------ATTTTCTAAA-----AGGTTGA-----GAACTATCA---------------------------------------------A-----TATGGT------------------------------------------------GTTACATTATTATAAAGTATAAATATATATA---TATATAAAATAAAA--TA-TATTTCAGCGTTGGCAGGCTAATGTGGCAGCAGC------------------------------TGAGCCAAGAGATGACCAGGAATGSizeHit CountTotal NormTotal
No Reads
droBia1
TAATAATACAACGGTCTCAGAAGGCGGCTCTCTTTTCTGCTAGTCAACAGGTAAACAAAT-----AGT---------------C-TTTA--CAATAAAAAT---------CAAATAAAAATGAAAT-AAA------------AGCGTTATAAAGGCAAGTTCAGAG---------------------------------------------------------------------------TAATTGTCAATGAGAAGAGAGA-----TAGATATCAATATTTATATAAATTTTA-GC--------GTGTTCCCATTATCTTTATCT------------------------------------------------------A-----------------------------TATAATCTCATTACTGGAC--TA-TATTCTAGCGCTGGCAGACAAATGTGGCCGCAGC------------------------------CGAGGTCAGAGACGACCCAGAATGSizeHit CountTotal NormTotal
No Reads
droTak1
TAGTAATACAACAGTCGCACAAAGCGGCCCTCTTTTCTGCCAGTCAACAGGTAAACAAAT-----AGG---------------G-GTT--TAT-------TACAAGCAATGAAATAAAAATA--AT-AA--------------------------------------AAAGTATTTTTCAATGGAGAATAATAAGTCCCATAAATT-----------------------------------------------------------------------------------------------------------------AAAT---------------------------------------------------------------------------------------------TCCTATTATTTAAC--TA-TATTTTAGCGCTGGCAGACAAATGCGGCCACAGC------------------------------TGAGGTCAGAGAAGATCCGGAATGSizeHit CountTotal NormTotal
No Reads
droEle1
TAGTTATACTACAGTCGCAAAAAGCGGCTCTCTTTTCGGCCAGTCAACAGGTAAACCAAT-----ATT---------------G-TTT--CA-------ACATTAACA--------------------------ATACAAT-----------------------AA---------------------------------------------------------------------------CAATTCTAAAAGAGGAGAAAAAATTGT--------------------------G-----------------------------------------------------------ATGGAAAAAGAAATTTAGTTGTGCAC--------------------------------AGAATCTCATAGTTTGAATATA-TTTTATAGCGATGGCAGACAAATGTGGCTGCAGC------------------------------TGAGATCAGAGACGATCCAGAATGSizeHit CountTotal NormTotal
No Reads
droRho1
TCTCATTAATTCAATCGCAAAAAGCGATTCTAACGCTCGGTTCTCAAAAGGTAAC-AAGTACTAA-GT----ATCAA--------------GAATT---------------AA-------T-------------------CTAGGAACTACTAGGCGGTTT--------------ATCAAGTGGAGTTTTCT------------TTACGGTGCCATTATTCACCATTGGCGAGCAAACAAAGCAATCAAAACGAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TA-TATTTCAGCGCTGGCAAACTAGTACGGCATCGGC------------------------------TGAAGCTAGAGACGATCAAGAATGSizeHit CountTotal NormTotal
No Reads
droFic1
TTATTATTTTGCAGTCACAAAAAGCTGCTCCCATTTTAGCCAGTCAACAGGTAAACAAAT-----GAT---------------A-TTT--CGAACC-------AAACAATGAA-------TGAAAT------------------GTTATATCTAATAGCTCATAATTAGAACATTTTCCAGTGGAGGAATTT------------ATATAATA------------------------------------------------------TT--------------------------TTAT--------TTGAATTCAGCA-----------------------------------------------------------------------------------------------------AATAATTGGTA--TA-TATTTTAGCGATGGCAAACAAATGTGGCTACAGC------------------------------TGAGATCAGAGAGGACCCCGAATGSizeHit CountTotal NormTotal
No Reads
droKik1
TATATATTATTCAGTCGCAAAGAGCGGCATTCTTTTCCACCAGTCAACAGGTAAACAACA-----TAT---------------T-TTTT--ATGCAGA--------CAAAAGC-------TATAAAAACTAGGAGTTTGTT-----------------------CG---------------------------------------------------------------------------GAAATTCAAATAAAACTATGAGATAAT--------------------------AATT--------TTTCCCCCATAAGAATTACTTACATCGACTTGCTCTTTCGAAAAAATTATTCAAAAAACCATATGGCTGTGGGAAAA---------------------------------ACTTATGTTTATGA--TA-CATTCCAGCGTTGGCAGACGAATGCGGCTGCCGC------------------------------TGAAACCAGAGACGATCCGGAATGSizeHit CountTotal NormTotal
No Reads
droAna3
TATATTTATTACAGTCGCAAAAAGCGGCTCTCTCTTCCATTAAACAAAAAGTAAATATTA-----ATT-------------CCA---TTTC--ACAAT-----AAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------TATAATAATAATAA--CG-TTTCCCAGAGGTGGCAGACAAATGTGGCAGCCAC---------------------------CAATGAAGCTCGAACCGATCCGGAATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAAATGTGGCAGC.........................................................1811.001100000
....................AAAGCGGCTCTCTCTTCCATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC---------------------------CAATGAAGCTCGAACC...........1911.001010000
.ATATTTATTACAGTCGCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAAATGTGGCAGCCAC---------------------------C..........................2111.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC---------------------------CAATGAAGCTCGAACCGATCC......2411.001010000
..TATTTATTACAGTCGCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331001000
droBip1
TATATTTGTTACAGTCGCAAAAAGCGGCTCTCTCTTCCATTAAACAAAAAGTAAACAATA-----ATA-------------CAA---TTTC--ACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCT------------------------------------------------------AA---------------------------------TAGAATAATAGAGT--GATGATTCCAGAGATGGCAGACCAATGTGGCAGCAAC---------------------------AAATGAGGCTAGAACCGATCCGGAATGSizeHit CountTotal NormTotal
No Reads
dp5
TATCTATAATTCAGGCGCAAAAAGCAGCCCTCTCTGTCAGCAGTCCGCTGGTAAATATAT-----AGTATACATATAGATCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------TAT-----CACGGT------------------------------------------------GATATACGT-------------------------------TTTT-GAA--TC-TCTTGCAGCGTTGGCAGACCACAGCAGCTGTAGC------------------------------AGAGCCCAGAAATGATGAAGAGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACAGCAGCTGTAGC------------------------------AGA.....................2131.0030100200000
...................AAAAGCAGCCCTCTCTGTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGACCACAGCAGCT...........................................................2030.6720000101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACAGCAGCTGTAGC------------------------------AGAGC...................2330.6720000200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGACCACAGCAGCTGTA........................................................2330.6720200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGCAGCTGTAGC------------------------------AGA.....................2030.6720101000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGAAATGATGAAGAGTG2130.3310000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGGCAGACCACAGCAGCTGT.........................................................2330.3310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCCAGAAATGATGAAGA...2130.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCACAGCAGCTGTAGC------------------------------AGA.....................2230.3310100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTGTAGC------------------------------AGAGCCCA................2130.3310100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAAATGATGAAGAGC.1930.3310010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGAAATGATGAAGAGT.2130.3310100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGGCAGACCACAGCAGCTGTAGC------------------------------AG......................2830.3310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------------------AGAGCCCAGAAATGATGAAG....2230.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCACAGCAGCTGTAGC------------------------------AG......................2130.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------AGAGCCCAGAAATGATGAAG....2330.3310100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCAGCTGTAGC------------------------------AGA.....................1930.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------AGAGCCCAGAAATGATGA......2130.3310000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCACAGCAGCTGTAGC------------------------------AGAGCCCAG...............2830.3310100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGC------------------------------AGAGCCCAGAAATGATGAAGA...2630.3310100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGACCACAGCAGCTGTAGC------------------------------AGA.....................2830.3310010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------------------AGAGCCCAGAAATGATGAAGA...2330.3310100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGTAGC------------------------------AGAGCCCAGA..............1930.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------AGAGCCCAGAAATGATGAAGA...2430.3310000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTGTAGC------------------------------AGAGCCC.................2030.3310100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGAAATGATGAAGA...1930.3310100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGACCACAGCAGCTGT.........................................................2230.3310100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGC------------------------------AGAGCCCAGAAATGATGAAGAGT.2830.3310000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGACCACAGCAGCTGTAGC------------------------------AGA.....................2530.3310100000000
droPer2
TATCTATAATTCAGGCGCAAAAAGCAGCCCTCTCTGTCCGCTGTCCGCTGGTAAATATAT-----AGTATACATATAGATCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------TAT-----CACAGT------------------------------------------------GATATACGT-------------------------------TTTT-GAA--TC-TCCTGCAGCGTTGGCAGACCACAGCAGCTGTAGC------------------------------AGAGCCCAGAAATGATGAAGAGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................AGCAGCCCTCTCTGTCCGCTGTCCGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................CCTCTCTGTCCGCTGTCCGCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACAGCAGCTGTAGC------------------------------AGAGCCC.................2530.672200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCTGTAGC------------------------------AGAGCCCAGAA.............2530.672200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACAGCAGCTGTAGC------------------------------AGAGC...................2330.672000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCCAGAAATGATGAAGAGT.2230.331000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACAGCAGCTGTAGC------------------------------AGAG....................2230.331001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGC------------------------------AGAGCCCAGAAATGAT........2130.331001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCTGTAGC------------------------------AGAGCCCAGA..............2530.331100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGACCACAGCAGCTGT.........................................................1930.331000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGAAATGATGAAGAGT.2030.331000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGGCAGACCACAGCAGCTGT.........................................................2330.331001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGC------------------------------AGAGCCCAGAAAT...........1830.331100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAGC------------------------------AGAGCCCAGAAATGATG.......2530.331010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCACAGCAGCTGTAGC------------------------------AGA.....................2230.331100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCTGTAGC------------------------------AGAGCCCA................2330.331100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------AGAGCCCAGAAATGATGAAGAGT.2430.331000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCACAGCAGCTGTAGC------------------------------A.......................2030.331001000
droWil2
CAGTCATTTGTAGGTCAAAGTTA------------------------------------T-----GGTAAAAATAATGTTCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------AAC-----TTA----------------------------------------------------------------------------------------TTTCACTTACC--AT-AATTTCAGCGGTGCCAAACTAATGCAGCAACTGC------------------------------CCTTGCTCGGGATGATAATGAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TA-TTGTTCAGCGCCTGCAAACAAGTGCAGCGAGCAGCGCTCTAAATGTATCGGAAAACGAACCATCCATAGCTAGACC---TGCGGGCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACGAACCATCCATA....................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATGTATCGGAAAACGAACC...........................2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGCTAGACC---TGCGGGC..1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGCGTTGTCAAAGCACAGCAGCCGCGGT---CA---------------AGGAGTCAAGCGTTGCTAGAGATGACGTCGAGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCACAGCAGCCGCGGT---CA---------------AGGAGT............................2813.003200001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT---CA---------------AGGAGTCAAGCGTTGCT.................2212.002000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGT---CA---------------AGGAGTCAAGCGTTGCT.................2412.002100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGATGACGTCGAGTG1811.001000001
..C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGCGTTGTCAAAGCACAGCAG.............................................................2511.001000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT---CA---------------AGGAGTCAAGCGTTGCTAGA..............2511.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGCGTTGCTAGAGA............1821.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCACAGCAGCCGCGGT---CA---------------AGGA..............................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGCTAGAGATGACGTCGA...2111.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGCACAGCAGCCGCGGT---CA---------------AGGA..............................2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGCACAGCAGCCGCGGT---CA---------------AGGA..............................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTGTCAAAGCACAGCAGCCGCG........................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGCGTTGCTAGAGATGA.........2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGT---CA---------------AGGAGTCAAGCGTTGCT.................2311.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCCGCGGT---CA---------------AGGAG.............................2211.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGTTGCTAGAGATGACGTCGAGTG2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCACAGCAGCCGCGG.......................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTAGAGATGACGTCG....1911.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGCGTTGCTAGAGAT...........1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAGCAGCCGCGGT---CA---------------AGGAGTC...........................2611.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCCGCGGT---CA---------------AGGAGTCA..........................2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCGGT---CA---------------AGGAGT............................2011.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCCGCGGT---CA---------------AGGAGT............................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCCGCGGT---CA---------------AGGA..............................2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCAGCCGCGGT---CA---------------AGGA..............................2211.001100000
droGri2
AAATAC-TTATCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--TG-TTTTTCAGCGTTATCAGAGTACTGCCATCGCAGG---TC---------------AGAAGCCAACTGCAGCTAGAGACGATGTCGAATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTAGAGACGATGTCG....1930.33101
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTGCCATCGCAGG---TC---------------..................................2130.33110

Generated: 05/18/2015 at 09:42 PM