ID:

dsi_26023

 Coordinate:

3l:9932849-9932998 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.2 -3.7

Flybase annnotation

exon [3l_9932750_9932848_-]; CDS [3l_9932750_9932848_-]; intron [3l_9932849_9933298_-]

Repeatable elements

NameClassFamilyStrand
(TCG)nSimple_repeatSimple_repeat+
mature
star
  1. 2l:7961807-7961824 -
  2. 2l:9673818-9673835 -
  3. 2l:13066954-13066971 +
  4. dsi_26023  3l:9932885-9932902 -
  5. 3l:13277211-13277228 +
  6. 3l:15942619-15942636 -
  7. 3r:3632815-3632832 -
  8. 3r:7394127-7394144 +
  9. 3r:11548042-11548059 +
  10. 3r:19570866-19570883 +
  11. dsi_12080  3r:20252548-20252565 +
  12. 3r:26532886-26532903 -
  13. x:6060248-6060265 -
  14. x:8119300-8119317 +
  15. x:8323329-8323346 +
  16. x:13972049-13972066 -
  17. x:14550691-14550708 +
  18. x:15896650-15896667 -
  19. x:19800173-19800190 +

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTAACAATAAGCTGGTGGCCAGTGGGACGACCTTGGGGCAACCGTCGGCAGTTGTTGCAGGTGCGGTTGCTCCCGGGAATGTTGCCGCTGGCGCCGACGACACTGACAACGACGATGACGATTATGATGAGGACGACGAGACCGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCCGGTGACGACGACGAGGAGGCCGACGATGATGATGACGATGAC
**************************************************************************************************************************************************................(((((((......))))))).......************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................................................CGACGATGATGATGACGATGAC 22 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
..................................TTCTGGGAACCGTCGGCAGTT................................................................................................................................................................................................... 21 3 4 1.25 5 0 0 0 5 0 0 0 0 0 0 0
................................................................................................................TACGATGACGATGATGATCAGGACGAC............................................................................................................... 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................AACCGTCGGCAGTTGTTGCAGGTG......................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GATGGAGTCGATGAAATTGG............................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................ACGATGACGATGATGATCAGGAC.................................................................................................................. 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...TAACAATAAGCTGGTGGCCAGTGGGA............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................ATGATGATGATGATGATAATGATGATGGA........................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CGATGATGATGACGATGAC 19 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGATGATGATGATGATATT.................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................................TCTGGGAACCGTCGGCAGTT................................................................................................................................................................................................... 20 3 4 0.75 3 0 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GACGAGGTGGCCGACG................. 16 1 11 0.73 8 8 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGATGATGATGATGATA...................................................................................... 18 0 19 0.58 11 11 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATCACCGGTGACGACGACGAT........................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................ATGATGATGATGATG......................................................................................... 15 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TAAGGATGGAGTCGATGAA.................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATGACGATTATGTTGAAGACGA................................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................GGTGCGGTTGCTCGCGCCAA......................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GACGAGGTGGCCGACGA................ 17 1 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0
..................................................CAGTTGCTGTAGGAGCGGTTGC.................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................ACGATGATGATCAGGACGACGATA........................................................................................................... 24 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................GATGATGATGATGATGATAT..................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGATGATGAGGATGATATTGCT................................................................................. 23 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................GACGATGATGATCAGGACGAC............................................................................................................... 21 2 10 0.20 2 0 0 1 0 1 0 0 0 0 0 0
...................................................................................................................................................TGATGATAATGATGATATGTATG................................................................................ 23 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................GATTATGATGAGGAA.................................................................................................................. 15 1 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0
...................................................................................................................................AGGACGACGATACTGATGAT................................................................................................... 20 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................GCAGGCGCGGTTGATCC............................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGTATCGCCGGCTAC.................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2
..............................GACCTTGGCGCAACGGT........................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................ATGACGATGATGATCAGGACGA................................................................................................................ 22 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
....................................CTGGGAACCGTCGGCAGTT................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
...................................TCTGGGAACCGTCGGCAGT.................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................GATGATGATGATGATGATA...................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATGACGATGATGATCAGGAC.................................................................................................................. 20 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................ATGACGATTATGTTGA...................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGTATCGCCGGTTC..................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................CACGATGATGATGACGATGA. 20 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................GTAGGTATCGCCGGT....................................... 15 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................GTGCTGAAGCTCCCGGGAA......................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGATGATGATGATGTTAT..................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTAATTGTTATTCGACCACCGGTCACCCTGCTGGAACCCCGTTGGCAGCCGTCAACAACGTCCACGCCAACGAGGGCCCTTACAACGGCGACCGCGGCTGCTGTGACTGTTGCTGCTACTGCTAATACTACTCCTGCTGCTCTGGCTACTACTACTACTACTATAACTACTACCTCAGCTACTTTAACCACTTTAATGTCCATAGCGGCCACTGCTGCTGCTCCTCCGGCTGCTACTACTACTGCTACTG
*************************************************************................(((((((......))))))).......************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body
.....................................................................................................................................ATGCTGCTATGGCTACTACTACT.............................................................................................. 23 2 2 0.50 1 1 0 0 0
......................................................................................................................................CGCTGCTCTGGCTACTCCTAC............................................................................................... 21 2 2 0.50 1 1 0 0 0
.................................................................................................................................................CTACTACTACTACTACTATA..................................................................................... 20 0 5 0.40 2 2 0 0 0
................................................................................................................................................................................AGCTGCTTTAATCACTTTACT..................................................... 21 3 4 0.25 1 0 0 1 0
........................ACCCTGCTGGATCCCCT................................................................................................................................................................................................................. 17 2 6 0.17 1 0 1 0 0
................................................................................................................................................GCTACTACTACTACTACTA....................................................................................... 19 0 20 0.15 3 3 0 0 0
...............................................................................................................................................GGCTACTACTACTACTACTA....................................................................................... 20 0 10 0.10 1 1 0 0 0
.............................................................................................................TTTCTTCTACTGCTAATACT......................................................................................................................... 20 2 11 0.09 1 1 0 0 0
...................................ACCCCGTTGGCTGCCCT...................................................................................................................................................................................................... 17 2 13 0.08 1 0 1 0 0
............................................................................................CGCGGCTGCGGCAACTGTTG.......................................................................................................................................... 20 3 14 0.07 1 0 0 0 1
................................................................................................................................................GCTACTACTACTACTA.......................................................................................... 16 0 20 0.05 1 1 0 0 0
..............................................................................................................................................TGGACACTACTACTACTACT........................................................................................ 20 2 20 0.05 1 1 0 0 0
....................................................................................................................................................CTACTACTACTACTAT...................................................................................... 16 0 20 0.05 1 1 0 0 0
...................................................................................................................................TCCTGCTGGTCTGGCC....................................................................................................... 16 2 20 0.05 1 0 1 0 0
.............................................................................................................................................CTGACTACTACTACTACTACT........................................................................................ 21 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9932799-9933048 - dsi_26023 CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTT---GCAGGTGCGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC------------GATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droSec2 scaffold_8200:1258-1509 - CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTT---GCAGGTGCGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC---------GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC-----GTGACGACGACGAAGAAGCCGAC---GATGATGATGACGATGAC---------------
dm3 chr3L:10188046-10188298 - CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCCG---CGGCAGTTGTT---GCAGGTGCGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ATGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC---------GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droEre2 scaffold_4784:10176406-10176655 - CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCGG---CGACAGGTGTT---GCAAGTGGGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC------------GATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGCGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droYak3 3L:10173480-10173738 - dya_758 CATTAAC---AA---------TAAA--------------CTGGT-GGCCAGT---------------GG---GCCGACCTTGGGGCAACCGGCGGCGACAGGTGTT---GCAAGTGGGG---------------------------------TTGCCCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------CGACGACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC---------GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droEug1 scf7180000409711:2042995-2043247 - CATTAAC---AA---------TAAG--------------CTGGT-GACCAGT---------------GG---GACGACCTTGGGGCAACCGG---CAACACTTGTTGCTGCCGGTGTTG---------------------------------TTGCTCCGGGGAATGT-------------TGCTGCTGGC------ACC------G-----------------------------TTGACACG------------------GACAA------CGCTGACGATGA---CGAATAT-----------GAT-----G---------AGGACGAC---GAG---------------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droBia1 scf7180000302428:7572458-7572716 + CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTCGGGGCAACCGG---CAACACTTGTT---GCCGGT------------------------------------GTTGCTCCCGGGAGTGT-------------TGCCGCTGGC------ACC------G-----------------------------ACAACGATAAC------AACGACACGGACAA------CGTAGACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAG---------------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGATGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droTak1 scf7180000415209:211316-211571 - CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---AACGACCTTGGGGCAGCCGG---CGACACATGTT---GCCGGT------------------------------------GTTGCTCCCGGGAATGT-------------TGCTGCTGGC------ACC------G------------------ACAACA-----ACGACATT------------------GACAA------CGCCGACGATGA---CGATTAT-----------GAG-----G---------ACGACGAC---GAGGAC------------GATGATGATGATGATGATATTGATGATGGGGTCGATGAAATTGGTGAAATTGCAGGTATCGCC----GGTGACGATGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droEle1 scf7180000490564:1003514-1003763 - CATTAAC---AA---------TAAG--------------CTGGT-GTCCAGT---------------GC---TACGACCTTGGGGCAACCAG---CAGCACTTGTT---GCCGGT------------------------------------GTTGCTCCGGGGAGTGT-------------TGCTGCTGGC------ACC------G-----------------------------ACGACACT------------------GACAA------CGCTGACGATGA---CGAATAT-----------GAT-----G---------AGGACGAC---GAGGAC------------GATGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGATGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droRho1 scf7180000780105:215105-215354 + CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---TGCGACCTTGGGGCAACCTG---CAACACTTGTT---GCCGGT------------------------------------GTTGCTCCGGGGGGTGT-------------TGCTGCTGGC------ACC------G-----------------------------ACGACACT------------------GACAA------CGCTGACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGGAC------------GATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGATGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droFic1 scf7180000453841:876482-876755 + CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GGGACGACGACCTTGGGGCAACAGCCGGCAGCAGTTGTTGTTGCAGGCAAT---------------------------------GTTGCTCCGGGGAATGT-------------TGCCCCTGGC------GCCGGC---A-----------------------------ATGACATA------------------GACAA------CGCTGACGATGA---CGATTAT-----------GATGAG--G---------ACGACGAC---GAGGACGAT------GATGATGATGATGGTGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------
droKik1 scf7180000302334:252007-252274 + CAATAAT---AA---------TAAT--------------CTGGT-GGCCAGT---------------GC---GGCGACCTTGGGGCCACTTGCCACACCAGGTGTG---GCAGGT------------------------------------GTTGCTCCGGGGATAGT-------------TGCCACTGGC---GCCACC------G-----------------------------ACAACACT------------------GACAA------CAACGACGACGACGACGAGGAC--GACGAGTATGAT-----G---------ATGACGAGGACGAG---------------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTACAGGTATCGCC----GGTGCCGATGACGAGGAGGCCGAT---GATGATGATGACGACGAC---------------
droAna3 scaffold_13337:15097860-15098145 - dan_2655 CATTAACAACAA---------CAA-----CAACAACAATGTGGT-GGGCGGT---------------GG---TGCGATCTTGGGGCAAGCGG---CGACACCTGTT---GCAGATA------------------------------------TTGCCACT-GCCCCGGGAGCGGGCGC---TGCTGCCACC------ACT------G-----------------------------CCGACACT------------------GACGC---------TGACGACGA---TTTGTACGA--T------GATGA-CG----------AGGACGCG---GAGGACGATGGGGAGGAAGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCGCC----GGCGACGACGACGAGGAGGGCGAC---GATGATGATGAGGACGAC---------------
droBip1 scf7180000394330:52786-53083 + CATTAACAACAA---------CAAC--------------TTGGT-GGCCGGT---------------GGTGCAACAATCTTGGGGCAACCGG---CGACACCTGTT---GCCGGAGAGGTTGCAGGAATAGCT------------------GCTG-TCCCGGGAGCGG------GCGCTACTGCCACTGAC------GCC--------------------------------------GACACT---------GACGACGCGGACGA------CGATGACGACGA---TTTGTACGA--T------GATGA-CG----------AGGACGAA---GAGGACGAA------GAGGACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTGCAGGTATCGCC----GGCGATGACGACGAGGAAGGCGAC---GATGATGATGAGGACGAC---------------
dp5 XR_group6:8581581-8581842 - dps_3105 TAATAAC---AA---------CCAA--------------ATAGT-CGCCGGA---------------CC---AGCGGCCCTGGGGAAGCCCG---CACCGG------------GG------------------------------------GCTGATCCCGGGCCTGT-------------TGCTACCGGC------GGCGCCACCG-----------------------------ACAACGATGACGACGCTGACGACGCTGACGA------C------GCTGA---CGACGAC-----------GAC-----GAGTACGATGAGGACGAT---------------------GAGGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATAGCC----GGCGACGACGACGAGGAGGCCGAC---GATGATGAGGACGACGAC---------------
droPer2 scaffold_0:4873201-4873421 - CGCCAAC---AG---------CAAGGTGGTAGTGATGACGAGGAGGGCTATG---------------GG---GGCTACTATGGCGGCGCTAG---TGGCAGTGG------------------------------------------------CTACTACG-GTGGCGG-------------TGCCAGTGGC------GGT------T-----------------------------ACGGC---------------------GACGA------CGATGATGATGA---TGAGTCT-----------GAT-----G---------ACGATTACGACGATGAC------------GACGAAGATGAGGATG------ATGACGAAGATGAAGA------------GTCA---AGCGCC----AGCGAGGTCGAGAAAGATGCAGCC---GATAA----------------------------
droWil2 scf2_1100000004837:487289-487619 + dwi_2263 TAATAAT---AATAACAATAACAAT--------------TTAGT-TGTCAGTCAAGCAGCAGCAGCAGC---AGCAACTTTGGGTCAGCCAG---TGGGAG-CGCT---GG--GCGTGGCC---------------CTGCCTCCGGCTAGTGCTGGTTCAGGTTTAGT-------------TACTGCTGCAGTGGCCACT------GATAACGCCGACAGCAATAATAATA-----ATAATAAT------------GACAACGACGA------CGAAGACGATGA---CGACTAT-----------GAT-----G---------ATGATGAT---GATGAT---------GATGATGAAGATGATGATGATATTGATGATGGGGTCGATGAAATTGATGAAATTGCAGGTCTAACT----GGTGATGACGATGAGGAGGCTGAC---GATGATGACGATGACGAC---------------
droVir3 scaffold_13049:15967863-15968127 - dvi_20140 TAACAAT---AA---------CAAT--------------TTAGT-TGTCAGC---------------------ACCGCTCCGGCGCAGCCAG---TAGTAGGCGCT---GTGGGCGTGGCAACTGGGCCAAATGCAGCGC------------CTGCTGCTGTTAATGT-------------TGCCGCCGGC------GCA------G-----------------------------CGT---CT------------------GACGA---CGAA---GACGATGACGATGAGGAC-----------GAT-----G---------AATATGAT---GAT------------GATGATGGTGATGATGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGC-GCTGACAGGT---GACGACGAGGAGTCTGACGACGATGACGATGATGACGAC---------------
droMoj3 scaffold_6680:20817359-20817629 + dmo_2552 CAACAAC---AA---------CGAT--------------CTAGT-CGTCAGC---------------------ACCGCTCCGGCGCAGTCGG---CGGTGGGCGCT---GTGGGCGTGTCAGCGGGGCCGATCGCAGCGC------------CTGCTGCTGGTATTAG-------------TGGCGCCGGT------GCA------G----------------------C-GTCTGATGACGAA------------------GACGA------CGACGACGACGA---CGAGGAC-----------GAT-----G---------AATATGAT---GAT------------GATGATGATGGTGGTGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGC-GCTGACAG---GTGACGACGAGGAGGCTGACGACGACGAAGATGACGATGAT---------------
droGri2 scaffold_15110:12692211-12692454 + TCCGGCC---CA---------GCAA--------------GTAGT-GGGCG------------------------TGGCAGTGGGACAGCCAC---TTGCAG------------------------------------CGC------------CCGCTGCT------GC-------------TAATGCTGGT------GCC------G-----------------------------GTGCAGCG------------------TCCGACGATGAT---GACTATGACGACGAGGAC-----------GAT-----G---------AATATGAT---GAT------------GATGATTATAGTGATGATGATATTGATGAAGGAGTCGATGAA---------ATTACAGGTGC-GCTGACAGGTGAC---GACGAGGAGGCTGACGACGATGATGATGACGATGACGATGATGATATTATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTT---GCAGGTGCGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC------------GATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGATGAC---------------2213.00300300000000000000
......................................................................................AACCGT---CGGCAGTTGTT---GCAGGTG............................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GATGGAGTCGATGAAATTGG...................................................................................2011.00100000000000100000
...TAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GA......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GATGATGATGACGATGAC---------------1921.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATATT..........................................................................................................2011.00100000100000000000
..................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATA............................................................................................................18190.5811000000000011000000
..................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATG...............................................................................................................15200.5010000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATAT...........................................................................................................2050.20100000000001000000
.................................................................................................................................................................................................................................................................................................GATTAT-----------GAT-----G---------AGGAA.......................................................................................................................................................15200.15300000003000000000
.................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATA............................................................................................................19170.06100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTATCGCC----GGTTC.......................................................16200.05100000010000000000
droSec2
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTT---GCAGGTGCGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC---------GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC-----GTGACGACGACGAAGAAGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................GG---GACGACCTTGGGGCAACC......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCCG---CGGCAGTTGTT---GCAGGTGCGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ATGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC---------GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATA............................................................................................................202011.35227000000000000000000000060000001950380000000000000000000000000000000000000000000000000000000000000000000000000100000000661640003001030011700006600000000000000000000000000000040005623000000000000000000000030150000000000015121200000000000000000100000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATGATGATGACGATGAC---------------2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GGAGTCGATGAAATTGGTGAAATTA...........................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGAT.............................................................................................................20202.555100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................C---------GATGATGATGATGATGATGATA............................................................................................................2352.201100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GATGATATTGATGATGGAGTCG.............................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATGATA............................................................................................................21201.65330000000000000000000000000000041001000000000000000000000000000000000000000000000000000000000000000000000000000000000000040003000000000000000200000000000000000000000000000000011050000000000000000000000100300000000000600100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GGAGTCGATGAAATTGGTGA................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCGATGAAATTGGTGAAATTACA.........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATTGATGATGGAGTCGATGAA........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTCGATGAAATTGG...................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATGATATTGATGATGGAGTCGATG..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATTGATGATGGAGTCGATG..........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCGATGAAATTGGTGAA...............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGCCGAC---GATGATGAT........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGCCGAC---GATGATGATGA......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCC----GGTGACGACGACGAGGAG..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATG...............................................................................................................18200.851700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATGATGATGACGATG.................1840.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATGATGATGACGATGA................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATGAT.............................................................................................................21200.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGAGGAGGCCGAC---GATGAG...........................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGATAT...........................................................................................................18100.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATGATA............................................................................................................22150.4770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000002000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GATGATGATGACGATGA................18120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGACGACGAGGAGA.........................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATA............................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CC---------GATGATGATGATGATGATG...............................................................................................................21110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATGATGATGACGA...................17120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATGATGATGACGAT..................1760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................C---------GATGATGATGATGATGATGA..............................................................................................................21200.1530000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATA............................................................................................................18200.1530000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATG...............................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGAT.............................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATAT...........................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................C---------GATGATGATGATGATGA.................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTTGGGGCAACCGG---CGACAGGTGTT---GCAAGTGGGG---------------------------------TTGCTCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------C---GACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC------------GATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGCGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGATGA................2122.5051000220
...............................................................................................................................................................................................................................................................................................................................................................................................................................C----GGCGACGACGACGAGGAGGC........................................2111.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGATG.................2020.5010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGAT..................1930.3310000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GATGATGATGACGATGA................18110.2731000020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATGATGATGACGAT..................1880.1310000010
..................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATA............................................................................................................18200.1020000020
droYak3
CATTAAC---AA---------TAAA--------------CTGGT-GGCCAGT---------------GG---GCCGACCTTGGGGCAACCGGCGGCGACAGGTGTT---GCAAGTGGGG---------------------------------TTGCCCCCGGGAATGT-------------TGCCGCTGGC------GCC------G-----------------------------ACGACACT------------------GACAA------CGACGACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGACC---------GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGAT..................1927.501507000080000
.....................................................................................................................................................................................................................................................................................GACGATGA---CGATTAT-----------GAT-----G---------AGGACGA.....................................................................................................................................................2611.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGATG.................2021.00200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGATGA................2120.50100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATGATGATGACGATG.................1960.33200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGACGA...................1890.22202000000000
.................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATA............................................................................................................19200.05100100000000
droEug1
CATTAAC---AA---------TAAG--------------CTGGT-GACCAGT---------------GG---GACGACCTTGGGGCAACCGG---CAACACTTGTTGCTGCCGGTGTTG---------------------------------TTGCTCCGGGGAATGT-------------TGCTGCTGGC------ACC------G-----------------------------TTGACACG------------------GACAA------CGCTGACGATGA---CGAATAT-----------GAT-----G---------AGGACGAC---GAG---------------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotal
No Reads
droBia1
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---GACGACCTCGGGGCAACCGG---CAACACTTGTT---GCCGGT------------------------------------GTTGCTCCCGGGAGTGT-------------TGCCGCTGGC------ACC------G-----------------------------ACAACGATAAC------AACGACACGGACAA------CGTAGACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAG---------------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGATGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotal
No Reads
droTak1
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---AACGACCTTGGGGCAGCCGG---CGACACATGTT---GCCGGT------------------------------------GTTGCTCCCGGGAATGT-------------TGCTGCTGGC------ACC------G------------------ACAACA-----ACGACATT------------------GACAA------CGCCGACGATGA---CGATTAT-----------GAG-----G---------ACGACGAC---GAGGAC------------GATGATGATGATGATGATATTGATGATGGGGTCGATGAAATTGGTGAAATTGCAGGTATCGCC----GGTGACGATGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotal
No Reads
droEle1
CATTAAC---AA---------TAAG--------------CTGGT-GTCCAGT---------------GC---TACGACCTTGGGGCAACCAG---CAGCACTTGTT---GCCGGT------------------------------------GTTGCTCCGGGGAGTGT-------------TGCTGCTGGC------ACC------G-----------------------------ACGACACT------------------GACAA------CGCTGACGATGA---CGAATAT-----------GAT-----G---------AGGACGAC---GAGGAC------------GATGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGATGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotal
No Reads
droRho1
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GG---TGCGACCTTGGGGCAACCTG---CAACACTTGTT---GCCGGT------------------------------------GTTGCTCCGGGGGGTGT-------------TGCTGCTGGC------ACC------G-----------------------------ACGACACT------------------GACAA------CGCTGACGATGA---CGATTAT-----------GAT-----G---------AGGACGAC---GAGGAC------------GATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGATGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotal
No Reads
droFic1
CATTAAC---AA---------TAAG--------------CTGGT-GGCCAGT---------------GGGACGACGACCTTGGGGCAACAGCCGGCAGCAGTTGTTGTTGCAGGCAAT---------------------------------GTTGCTCCGGGGAATGT-------------TGCCCCTGGC------GCCGGC---A-----------------------------ATGACATA------------------GACAA------CGCTGACGATGA---CGATTAT-----------GATGAG--G---------ACGACGAC---GAGGACGAT------GATGATGATGATGGTGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCGCC----GGTGACGACGACGAGGAGGCCGAC---GATGATGATGACGATGAC---------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAATAAT---AA---------TAAT--------------CTGGT-GGCCAGT---------------GC---GGCGACCTTGGGGCCACTTGCCACACCAGGTGTG---GCAGGT------------------------------------GTTGCTCCGGGGATAGT-------------TGCCACTGGC---GCCACC------G-----------------------------ACAACACT------------------GACAA------CAACGACGACGACGACGAGGAC--GACGAGTATGAT-----G---------ATGACGAGGACGAG---------------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTACAGGTATCGCC----GGTGCCGATGACGAGGAGGCCGAT---GATGATGATGACGACGAC---------------SizeHit CountTotal NormTotal
No Reads
droAna3
CATTAACAACAA---------CAA-----CAACAACAATGTGGT-GGGCGGT---------------GG---TGCGATCTTGGGGCAAGCGG---CGACACCTGTT---GCAGATA------------------------------------TTGCCACT-GCCCCGGGAGCGGGCGC---TGCTGCCACC------ACT------G-----------------------------CCGACACT------------------GACGC---------TGACGACGA---TTTGTACGA--T------GATGA-CG----------AGGACGCG---GAGGACGATGGGGAGGAAGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCGCC----GGCGACGACGACGAGGAGGGCGAC---GATGATGATGAGGACGAC---------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGAC---GATGATGATGAGG....................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATGATGATGAGGA...................1870.715000023
.................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATATT..........................................................................................................2130.672000002
..............................................................................................................................................................................................................................................................................................................................................................GAAGATGATGATGATGAT................................................................................................................18190.051000001
droBip1
CATTAACAACAA---------CAAC--------------TTGGT-GGCCGGT---------------GGTGCAACAATCTTGGGGCAACCGG---CGACACCTGTT---GCCGGAGAGGTTGCAGGAATAGCT------------------GCTG-TCCCGGGAGCGG------GCGCTACTGCCACTGAC------GCC--------------------------------------GACACT---------GACGACGCGGACGA------CGATGACGACGA---TTTGTACGA--T------GATGA-CG----------AGGACGAA---GAGGACGAA------GAGGACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTGCAGGTATCGCC----GGCGATGACGACGAGGAAGGCGAC---GATGATGATGAGGACGAC---------------SizeHit CountTotal NormTotal
No Reads
dp5
TAATAAC---AA---------CCAA--------------ATAGT-CGCCGGA---------------CC---AGCGGCCCTGGGGAAGCCCG---CACCGG------------GG------------------------------------GCTGATCCCGGGCCTGT-------------TGCTACCGGC------GGCGCCACCG-----------------------------ACAACGATGACGACGCTGACGACGCTGACGA------C------GCTGA---CGACGAC-----------GAC-----GAGTACGATGAGGACGAT---------------------GAGGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATAGCC----GGCGACGACGACGAGGAGGCCGAC---GATGATGAGGACGACGAC---------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................CTGGGGAAGCCCG---CACCGG------------GG------------------------------------GCTGATCC.................................................................................................................................................................................................................................................................................................................................2911.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATATTGATGATGGA.................................................................................................2311.0010000100000
droPer2
CGCCAAC---AG---------CAAGGTGGTAGTGATGACGAGGAGGGCTATG---------------GG---GGCTACTATGGCGGCGCTAG---TGGCAGTGG------------------------------------------------CTACTACG-GTGGCGG-------------TGCCAGTGGC------GGT------T-----------------------------ACGGC---------------------GACGA------CGATGATGATGA---TGAGTCT-----------GAT-----G---------ACGATTACGACGATGAC------------GACGAAGATGAGGATG------ATGACGAAGATGAAGA------------GTCA---AGCGCC----AGCGAGGTCGAGAAAGATGCAGCC---GATAA----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................GTGATGACGAGGAGGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................1814.004400000
......................................................................................................................................................................................................................................................................................................................................GATTACGACGATGAC------------GACGAAGATGAGG..................................................................................................................2813.003300000
...................................................................................................................................................................................................................................................................................................................................................AC------------GACGAAGATGAGGATG------ATGAC....................................................................................................2313.003300000
..............................................................................................................................................................................................................................................................................................................................................CGATGAC------------GACGAAGATGAGGAT................................................................................................................2212.002000002
............................GTAGTGATGACGAGGAGGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.........................................................................................................................................................................................................................................................................................................................................................................TGAGGATG------ATGACGAAGATGA............................................................................................2112.002200000
..................................................................................................................................................................................................................................................................................................AGTCT-----------GAT-----G---------ACGATTACGAC.................................................................................................................................................2012.002200000
........................................................................................................................................................................................................................................................................................................................................TTACGACGATGAC------------GACGAAGATGAGG..................................................................................................................2612.002000002
.................................................ATG---------------GG---GGCTACTATGGCGGCGCT......................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..................................ATGACGAGGAGGGCTATG---------------GG---........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCC----AGCGAGGTCGAGAAAGAT..........................................2111.001000001
.........................................................................................................................................................................................................................................................................GA------CGATGATGATGA---TGAGTCT-----------GAT-----G---------............................................................................................................................................................2511.001000001
....................................GACGAGGAGGGCTATG---------------GG---........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.................................................................................................................................................................................................................................................................................................................................................TGAC------------GACGAAGATGAGGATG------ATGAC....................................................................................................2511.001100000
..........................................................................................................................................................................................................................................................................................................................................ACGACGATGAC------------GACGAAGATGAGGATG------AT.......................................................................................................2911.001100000
..............................................................................TATGGCGGCGCTAG---TGGCA............................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.................................................................................GGCGGCGCTAG---TGGCAGT..........................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
........................................................................................................................................................................................................................................................................CGA------CGATGATGATGA---TGAGTC..........................................................................................................................................................................................2111.001000001
......................AAGGTGGTAGTGATGACGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................GATGACGAGGAGGGCTATG---------------GG---........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...................................................................................................................................................................................................................................................................................................................................................................CGAAGATGAGGATG------ATGACG...................................................................................................2011.001000001
...............................................................................................................................................................................................................................................................................................................................................GATGAC------------GACGAAGATGAGGAT................................................................................................................2111.001000001
.................................GATGACGAGGAGGGCTATG---------------GG---GG......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...............................GTGATGACGAGGAGGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
............................GTAGTGATGACGAGGAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........G---------CAAGGTGGTAGTGATGACGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGTCGAGAAAGATGC........................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................C----AGCGAGGTCGAGAAAGA...........................................1811.001000001
................................TGATGACGAGGAGGGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................A---AGCGCC----AGCGAGGTCGAGAAAGATGC........................................2711.001100000
.....AC---AG---------CAAGGTGGTAGTGATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...........................GGTAGTGATGACGAGGAGGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................AGA------------GTCA---AGCGCC----AGCGAGGT....................................................2111.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGTCGAGAAAGATGC........................................2011.001001000
.........................................................................................................................................................................................................................................................................GA------CGATGATGATGA---TGAGTC..........................................................................................................................................................................................2020.501000001
.............................................................................................................................................................................................................................................................................................................................................................................GATG------ATGACGAAGATGAAGA------------.............................................................................2020.501000001
.........................................................................................................................................................................................................................................................................................................................................................................TGAGGATG------ATGACGAAGATGG............................................................................................2120.501100000
droWil2
TAATAAT---AATAACAATAACAAT--------------TTAGT-TGTCAGTCAAGCAGCAGCAGCAGC---AGCAACTTTGGGTCAGCCAG---TGGGAG-CGCT---GG--GCGTGGCC---------------CTGCCTCCGGCTAGTGCTGGTTCAGGTTTAGT-------------TACTGCTGCAGTGGCCACT------GATAACGCCGACAGCAATAATAATA-----ATAATAAT------------GACAACGACGA------CGAAGACGATGA---CGACTAT-----------GAT-----G---------ATGATGAT---GATGAT---------GATGATGAAGATGATGATGATATTGATGATGGGGTCGATGAAATTGATGAAATTGCAGGTCTAACT----GGTGATGACGATGAGGAGGCTGAC---GATGATGACGATGACGAC---------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................GGGGTCGATGAAATTGAA..................................................................................1811.00100010
............................................................................ACTTTGGGTCAGCCAG---TGGGAG-CGCT---GG--...............................................................................................................................................................................................................................................................................................................................................................................2811.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTGAC---GATGATGACGATGACGAC---------------2711.00110000
......................................................................................................................................................................................................................................................................................................................................GATGAT---GATGAT---------GATGATGA..........................................................................................................................20200.35700070
.....................................................AAGCAGCAGCAGCAGC---AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................20200.15300030
..........................................................................................................................................................................................................................................................................................................................................AT---GATGAT---------GATGATGAAGATGATGAT................................................................................................................2690.11100100
....................................................................................................................................................................................................................................................................................................................T-----G---------ATGATGAT---GATGAT---------GATGATGAA.........................................................................................................................25200.10200110
.....................................................................................................................................................................................................................................................................................................AT-----------GAT-----G---------ATGATGAT---GATGA............................................................................................................................................19200.10200200
...................................................................................................................................................................................................................................................................................................................................................AT---------GATGATGAAGATGATGATG...............................................................................................................21200.10200011
..................................................................................................................................................................................................................................................................................................................................................GAT---------GATGATGAAGATGATGAT................................................................................................................21200.10200200
...............................................................................................................................................................................................................................................................................................................................................GATGAT---------GATGATGAAGATGATGAT................................................................................................................24110.09100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATGATGACGATGACGAC---------------21110.09100100
..........................................................................................................................................................................................................................................................................................................................................AT---GATGAT---------GATGATGAAGATGATGA.................................................................................................................25130.08100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GATGATGACGATGACGAC---------------19160.06100100
..............................................................................................................................................................................................................................................................................................................................................................GATGATGAAGATGATGATGAT.............................................................................................................21190.05100001
...................................................................................................................................................................................................................................................................................................................................................AT---------GATGATGAAGATGATGA.................................................................................................................19200.05100100
..........................................................................................................................................................................................................................................................................................................................................AT---GATGAT---------GATGATGAAGAT......................................................................................................................20200.05100100
........................................................................................................................................................................................................................................................................................................................................TGAT---GATGAT---------GATGATGAAGA.......................................................................................................................21200.05100010
.........................................................................................................................................................................................................................................................................................................................................GAT---GATGAT---------GATGATGAAGAT......................................................................................................................21200.05100100
...................................................................................................................................................................................................................................................................................................CTAT-----------GAT-----G---------ATGATGAT---GATGA............................................................................................................................................21200.05100010
.......................................................................................................................................................................................................................................................................................................................................ATGAT---GATGAT---------GATGATGAAGAT......................................................................................................................23200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAC---GATGATGACGATGA...................18200.05100010
...........................................................................................................................................................................................................................................................................................................................................T---GATGAT---------GATGATGAAGA.......................................................................................................................18200.05100010
....................................................................................................................................................................................................................................................................................................................................ATGATGAT---GATGAT---------GATGATGAAG........................................................................................................................24200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATGATGACGATGAC..................18200.05100010
...............................................................................................................................................................................................................................................................................................................................................................ATGATGAAGATGATGATGAT.............................................................................................................20200.05100100
.................................................................................................................................................................................................................................................................................................GACTAT-----------GAT-----G---------ATGATGAT---GA...............................................................................................................................................20200.05100010
......................................................................................................................................................................................................................................................................................................................................GATGAT---GATGAT---------GATGATGAAG........................................................................................................................22200.05100010
...........................................................................................................................................................................................................................................................................................................................................T---GATGAT---------GATGATGAAGATG.....................................................................................................................20200.05100100
...................................................................................................................................................................................................................................................................................................................................................AT---------GATGATGAAGATGATGAT................................................................................................................20200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATGATGACGATGACGA................20200.05100100
....................................................................................................................................................................................................................................................................................................................T-----G---------ATGATGAT---GATGAT---------GATGATGAAG........................................................................................................................26200.05100010
......................................................................................................................................................................................................................................................................................................................................GATGAT---GATGAT---------GATGATGAAGA.......................................................................................................................23200.05100010
...................................................................................................................................................................................................................................................................................................................AT-----G---------ATGATGAT---GATGAT---------GATG..............................................................................................................................21200.05100001
..............................................................................................................................................................................................................................................................................................................................................................GATGATGAAGATGATGAT................................................................................................................18200.05100100
droVir3
TAACAAT---AA---------CAAT--------------TTAGT-TGTCAGC---------------------ACCGCTCCGGCGCAGCCAG---TAGTAGGCGCT---GTGGGCGTGGCAACTGGGCCAAATGCAGCGC------------CTGCTGCTGTTAATGT-------------TGCCGCCGGC------GCA------G-----------------------------CGT---CT------------------GACGA---CGAA---GACGATGACGATGAGGAC-----------GAT-----G---------AATATGAT---GAT------------GATGATGGTGATGATGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGC-GCTGACAGGT---GACGACGAGGAGTCTGACGACGATGACGATGATGACGAC---------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................GATGGTGATGATGATGATATTGATGATGGAGT...............................................................................................3211.001000000000000000000000000000000000000000000000001000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGATGACGATGATGACG.................2211.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................C-----------GAT-----G---------AATATGAT---GAT------------GAT...............................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATGATGGTGATGATGATGATA............................................................................................................2120.501000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AC-----------GAT-----G---------AATATGAT---GAT------------GATA..............................................................................................................................2120.501000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GACGATGACGATGAGGAC-----------GAT-----G---------............................................................................................................................................................2230.331000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGATGATGACGAC---------------1870.292101000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACGACGATGACGAG........................1840.251000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GAT-----G---------AATATGAT---GAT------------GATA..............................................................................................................................1970.141000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGATGACGATGATGA...................20100.101100000000000000000000000000000000000000000000000000000000000000
droMoj3
CAACAAC---AA---------CGAT--------------CTAGT-CGTCAGC---------------------ACCGCTCCGGCGCAGTCGG---CGGTGGGCGCT---GTGGGCGTGTCAGCGGGGCCGATCGCAGCGC------------CTGCTGCTGGTATTAG-------------TGGCGCCGGT------GCA------G----------------------C-GTCTGATGACGAA------------------GACGA------CGACGACGACGA---CGAGGAC-----------GAT-----G---------AATATGAT---GAT------------GATGATGATGGTGGTGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGC-GCTGACAG---GTGACGACGAGGAGGCTGACGACGACGAAGATGACGATGAT---------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................TTGATGATGGAGTCGATGAA---------ATTA...........................................................................2411.001010000
droGri2
TCCGGCC---CA---------GCAA--------------GTAGT-GGGCG------------------------TGGCAGTGGGACAGCCAC---TTGCAG------------------------------------CGC------------CCGCTGCT------GC-------------TAATGCTGGT------GCC------G-----------------------------GTGCAGCG------------------TCCGACGATGAT---GACTATGACGACGAGGAC-----------GAT-----G---------AATATGAT---GAT------------GATGATTATAGTGATGATGATATTGATGAAGGAGTCGATGAA---------ATTACAGGTGC-GCTGACAGGTGAC---GACGAGGAGGCTGACGACGATGATGATGACGATGACGATGATGATATTATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGACGATGAC...............18200.05110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGATGACGAT..................18200.05110

Generated: 05/18/2015 at 08:46 AM