dsi_260

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATATGTCGTGATAACTGGCGCCCGAGCAGGGACGTCCAGCGATCCATACATATACAGAATCACACTGAACACAGCATGTTCCAACCAACAAATAAAAATGCTACCACACAACT *********************************..((.(((......(((...((.((((((...(((..(((((((((.....))).)).))))..)))...))))))))...)))..........)))..))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	O002 Head	M025 embryo	SRR618934 dsim w501 ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
..................................................ATAAGGTAATATGTCGTG.......................................................................................................	18	0	1	15.00	15	12	3	0	0	0	0
..................................................ATAAGGTAATATGTCGTGA......................................................................................................	19	0	1	9.00	9	5	4	0	0	0	0
.................................................GATAAGGTAATATGTCGT........................................................................................................	18	0	1	5.00	5	3	2	0	0	0	0
.............................................................................................................ATACAGAATCACACTGAAC...........................................	19	0	1	3.00	3	0	0	3	0	0	0
............................................................ATGTCGGCATAGCTGGCGCCCG.........................................................................................	22	3	1	1.00	1	0	0	0	1	0	0
................................GCGATCAGCTGGGTCGCGATAAGGCT.................................................................................................................	26	2	1	1.00	1	0	0	0	0	1	0
.........GCTGAATCAGACTCGTACC...............................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0
................................................CGATAAGGTAATATGTCGT........................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
.................TGACTCGTACCTCCTGC.........................................................................................................................................	17	2	6	0.17	1	0	0	0	0	0	1
....................................TCAGCTGGGTCGTGAGAC.....................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0

GGTGTTGCTCGACTTAGTCTGAGCATGGCGGACGCTAGTCGACCCAGCGCTATTCCATTATACAGCACTATTGACCGCGGGCTCGTCCCTGCAGGTCGCTAGGTATGTATATGTCTTAGTGTGACTTGTGTCGTACAAGGTTGGTTGTTTATTTTTACGATGGTGTGTTGA *********************************..((.(((......(((...((.((((((...(((..(((((((((.....))).)).))))..)))...))))))))...)))..........)))..))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	SRR902009 testis	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head	O002 Head	M024 male body	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR1275483 Male prepupae	SRR553487 NRT_0-2 hours eggs
.........................................................................ACCGCGGGCTCGTCCCTGTACTT...........................................................................	23	3	9	13.00	117	44	26	35	0	5	1	0	0	1	0	4	1	0
.........................................................................ACCGCGGGCTCGTCCCTGCACTT...........................................................................	23	2	1	6.00	6	5	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTG................................................................................	18	0	13	5.85	76	40	6	0	12	0	0	12	0	6	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGAA..............................................................................	20	1	8	2.63	21	14	7	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCT.................................................................................	17	0	17	1.71	29	22	0	0	0	2	3	0	0	0	2	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGTA..............................................................................	20	1	8	1.50	12	11	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTTGTCCCTGCA..............................................................................	20	1	5	1.20	6	5	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................GACCGCGGGCTCGTCCCTG................................................................................	19	0	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0
..........................................................................CCGCGGGCTCGTCCCTGCA..............................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGCA..............................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................AGGTCGCTAGGTATGTATATGTCTT......................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................TGACCGCGGGCTCGTC....................................................................................	16	0	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCC...................................................................................	15	0	20	0.80	16	11	0	0	0	1	0	0	0	0	3	0	0	1
.........................................................................ACCGCGGGCTCGTCCC..................................................................................	16	0	17	0.65	11	7	0	1	0	3	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGTAC.............................................................................	21	2	11	0.64	7	2	4	0	0	0	0	1	0	0	0	0	0	0
.........................................................................GCCGCGGGCTCGTCCCTGC...............................................................................	19	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGTACGT...........................................................................	23	2	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GCGGGCTTGTCCCTCCAGGC...........................................................................	20	3	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGCACTTG..........................................................................	24	3	5	0.40	2	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................GACCGCGGGCTCGTCCCTGAAC.............................................................................	22	2	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCGGGCTCGTCCCTG................................................................................	17	0	13	0.23	3	3	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTTTATTTTTACG............	15	0	9	0.22	2	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................CCGCGGGCTCGTCCCTGTACTT...........................................................................	22	3	10	0.20	2	2	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACAGCGGGCTCGTCCCTGCT..............................................................................	20	2	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGTACCT...........................................................................	23	3	6	0.17	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCGGGCTTGTCCCTCCA..............................................................................	19	2	6	0.17	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGCTT.............................................................................	21	2	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................TTTACCGCGGGCTCGTCCCTG................................................................................	21	1	6	0.17	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTTGTCCCTTCA..............................................................................	20	2	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTTGTCCTAGCAG.............................................................................	21	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................ACCGCGTGCTCGTCCCTG................................................................................	18	1	13	0.15	2	0	0	0	2	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGAACGTG..........................................................................	24	3	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGAACTTC..........................................................................	24	3	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCTGGCTCGTCCCTG................................................................................	18	1	15	0.13	2	0	0	0	1	0	0	1	0	0	0	0	0	0
..........................................................................CCGCGGGCTCGTCCCTGAA..............................................................................	19	1	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTTGTCCCTACCG.............................................................................	21	3	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCTGTACAT...........................................................................	23	3	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCTTCCCTG................................................................................	18	1	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................GCCGCGGGCTCGTCCCTG................................................................................	18	1	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................CCGCGGGCTCGTCCC..................................................................................	15	0	17	0.06	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCGGGCTCGTCCCT.................................................................................	16	0	17	0.06	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGTCCCGTCCCTG................................................................................	18	2	18	0.06	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCACT.................................................................................	17	1	18	0.06	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCCCG................................................................................	18	1	18	0.06	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCGGGCTTGTCCCTTCCG.............................................................................	20	3	19	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGCGGGCTCGTCCTTG................................................................................	18	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCGGGCTTGTCCCTACCG.............................................................................	20	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:16350747-16350917 +	dsi_260	CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGACGTCCAGCG-ATCCATACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------AATG---------C-------------TACCACAC---------AACT
droSec2	scaffold_7:430577-430747 +		CCACAACGAGCTCAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGACGTCCAGCG-ATCCATACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------AATG---------C-------------TACCACAC---------AACT
dm3	chr2L:16783857-16784034 +		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGACGTCCAGCG-ATTCATACATATA----------------CAGATC-CATAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AAAAA------AA--AATG---------C-------------TACCACAC---------AACT
droEre2	scaffold_4845:19854434-19854604 +		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGACAAC------------------------------GGACGTCCAGCG-ATCCACACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------AATG---------C-------------TACCACAC---------AACT
droYak3	2R:4318093-4318263 -		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGGGCAC------------------------------GGACGTCCAGCG-ATCCATACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------TATG---------C-------------TACCACAC---------AACT
droEug1	scf7180000408961:356783-356947 +		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGTTGGGTCGTGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCCATCAG------------------------------GGACGCCCAGCG-ATCCATACATATA----------------CAGAAT---TAC----------------------ACAGAACA-----CGCATGTTCCAACCA---A-ATA-AA---------------AG---------C-------------AACCACAC---------AACT
droBia1	scf7180000301468:951564-951727 +		CCACAATGAGCTGAATCAGACTCGTACCGCCTGCGATCAGTTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCAAAAAG------------------------------GGACGCCCAGCG-ATCCACACATATA----------------CAGAAT---GAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-ATA-AA----------------G---------C-------------AATCACAC---------AACT
droTak1	scf7180000415914:530406-530569 +		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-CGACA-----------------------------------AGTGGCGCCCGAGCAG------------------------------GGACGCCGATCG-ATCCACACATATA----------------CAGAAT---TAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-ATA-AA----------------G---------C-------------CAACACAC---------AACT
droEle1	scf7180000490579:558917-559083 -		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGACCAG------------------------------GGACGCCCAGCG-ATTCATACATATATA--------------CAGAAAT--TAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-AAAAAA-------------AAGA---------C-------------AACCACAC-------------
droRho1	scf7180000780103:198592-198756 -		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGACCAG------------------------------GGACGCCCAGCG-ATTCATACATATATA--------------CAGAAT---TAC----------------------ACTGAACA-----CGCATGTTCCAACCAAGA----A-AA-------------AATG---------C-------------AACCACAC-------------
droFic1	scf7180000454078:710851-711014 +		CCACAACGAGCTCAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATG--TGTCG-CGATA-----------------------------------ACTGGCGCCCGCGTTG------------------------------GGACGCCCAGGC-ATCCATACATATA----------------CAGAAC---CAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-ATAAAA-------------AATA---------G-------------AACCACAC-------------
droKik1	scf7180000302472:50231-50416 +		CCACAACGAGCTGAATCAGACTCGTACCGCTTGCGATCAGTTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------AGTGGCGCCCGACCAG----A------AACACCTC--CAGTC-T--GGGCGCCCAGGG-ATCCACACATATA----------------CAAAAT---CAC----------------------ACTGAACCGA---TGCATGTTTAAACCA---A-ATAAAA-------------AAAG---------C------------AAACCACAC---------AACT
droAna3	scaffold_12916:7343535-7343730 +		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCTTCACCAG----G------ATATCATC--CTGAT-G--TGGCGCCCAGGG-ATACACACATATAAA--------------CAGAATA--TAC----------------------ACTGAACA-----TGCATGTTCCAATAA---A-ATAAAA-------------AATA---------AAATCAAAAATATAAACCACAC---------A---
droBip1	scf7180000396566:513163-513349 +		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGACCCACCAG----G------AT--ACTC--CTGAC-A--GGTCGCCCAGGG-ATACACACATATATA--------------CAGAATGTACAC----------------------ACTGAACA-----TGCATGTTCCAA------A-ATAAATGATAA--------AAAA---------A-------------AACCACAC---------AA-T
dp5	4_group3:2996279-2996500 -		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGATGGGTCGCGATAAGGTAATA--TGTCG-CGATC-----------------------------------ACAAGCACCCAACCCCAGAGGTCTGCAAAACCCTC--TGGGT-T--GGGTGCCTTATG-GTCCACACATATCTGAATACGAGTACACACAGAAC---CACCACTGAACACTGAAAACTTAAAACTGAACA-----CGCATGTTCCAACCA---A----------------------AG---------C-------------T-CCACAC---------AACT
droPer2	scaffold_1:4482817-4483038 -		CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGATGGGTCGCGATAAGGTAATA--TGTCG-CGATC-----------------------------------ACAAGCACCCAACCCCAGAGGTCTGCAAAGCCCTC--TGGGT-T--GGGTGCCTTATG-GTCCACACATATCTGAATACGAGTACACACAGAAC---CACCACTGAACACTGAAAACTTAAAACTGAACA-----CGCATGTTCCAACCA---A----------------------AG---------C-------------T-CCACAC---------AACT
droWil2	scf2_1100000004577:1141086-1141253 +		CCACAACGAGTTGAATCAGACTCGCACTGCTTGCGATCAATTGGGTCGCGATAAGGTAATA--TGTCGGTCATAT-GTCCCG---TCGCTG-TGGGATTGAAATCT-----------------------------------CTAAGCGAGTTCAG--CGGGCATATG-CACCACACATATA----------------CAC-----------------------------------------------------CAA----CAACACC-AA---------------AA---------A-------------AACTACAC-------TGAACT
droVir3	scaffold_12963:10131664-10131861 +		CCACAATGAGTTGAATCAAACTCGTACCGCCTGCGATCAGTTGGCTCGCGATAAGGTAATA--TGTCGGCCATAT-GCAACGTGTTCGC-GATC-----------TCCTACTGGCGATCGTGA----------------------------CTACGG--GGCAAATG-GACCACACATATACACCTAATTAAATACATAGA-----TAC----------------------A----CTA-----CGCATGTAACACACA---C-ACA-CA---------------CA---------C-------------AGACACAC---------ACAT
droMoj3	scaffold_6500:2812046-2812190 +		CCACAATGAGTTGAATCAAACTCGTACCGCCTGCGATCAGTTGGCCCGCGATAAGGTAATA--TGTTG-TGGCA-----------------------------------TATGG-------------------------------------------------------GCCACACATATAC-------------------------------------------------ACCGAACACACAACGCATGTACCAC--A---A-ACA-CA-------------AACA---------C-------------ACACACACGCACACA--CTCT
droGri2	scaffold_15252:13266156-13266363 +		CCACAATGAGTTGAATCAAACTCGTACCGCCTGCGATCAGTTGGCTCGCGATAAGGTAATATATGTCGGACATATTGCAACTGGGTCGCTGATCCGATTCTGATCT--------------CGA---------------------------TCTAT--GTGGCATATGTGGCCACACATATACA--------------CCTAAT---TAC----------------------ACAC---A-----CTCACG-AACACACA---C-ACA-CA-----CACAGACAAAAGCATGTGCCAC-------------AAACACAC---------ACCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGACGTCCAGCG-ATCCATACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------AATG---------C-------------TACCACAC---------AACT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................ATAAGGTAATA--TGTCG-TG....................................................................................................................................................................................................................................................................	18	1	15.00	15	0	0	0	0	12	3	0	0	0	0	0	0	0	0	0	0	0
..................................................ATAAGGTAATA--TGTCG-TGA...................................................................................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0
.................................................GATAAGGTAATA--TGTCG-T.....................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATA----------------CAGAAT---CAC----------------------ACTGAAC.............................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCGATCAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................CGATAAGGTAATA--TGTCG-T.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCACAACGAGCTCAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGACGTCCAGCG-ATCCATACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------AATG---------C-------------TACCACAC---------AACT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............ATCAGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0
...................................ATCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	1	0	0
.........................ACCGCCTGCGATCAGCTGGGTCGCGA........................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...........................................................TA--TGTCG-TGATA-----------------------------------ACTGGC........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
.................AGACTCGTACCGCCTGCGA.......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
............................GCCTGCGATCAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	1
......................CGTACCGCCTGCGATCAGCTGGG..............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
....................CTCGTACCGCCTGCGATCAGCT.................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
..................................GATCAGCTGGGTCGCGATAAGG...................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
........AGCTCAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
............................GCCTGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
...............TCAGACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.................AGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.........................................................................A-----------------------------------ACTGGCGCCCGAGCAG------------------------------G...............................................................................................................................................................................	18	3	0.33	1	0	0	1	0

dm3

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGACGTCCAGCG-ATTCATACATATA----------------CAGATC-CATAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AAAAA------AA--AATG---------C-------------TACCACAC---------AACT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................GATCAGCTGGGTCGCGATA......................................................................................................................................................................................................................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCGATCAGCTGGGTCGCGAT.......................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAA.....................................................................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCGATCAGCTGGGTCGC..........................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAGCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................TA-----------------------------------ACTGGCGCCCGAGCAG------------------------------GG..............................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................AGCTGGGTCGCGATAAGGATC................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CAGCTGGGTCGCGATC......................................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TGGCGCCCGAGCAG------------------------------GGAC............................................................................................................................................................................	18	10	0.40	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................A-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGAC............................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GCTGGGTCGCGATAAGAC..................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................ACTGGCGCCCGAGCAG------------------------------GGA.............................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................A-----------------------------------ACTGGCGCCCGAGCAG------------------------------GGACAC..........................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGACAAC------------------------------GGACGTCCAGCG-ATCCACACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------AATG---------C-------------TACCACAC---------AACT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................GCCTGCGATCAGCTGGGTCG...........................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	2	1	0
..........................CCGCCTGCGATCAGCTGGGTCGC..........................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................CGTACCGCCTGCGATCAGCTG................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
....AACGAGCTGAATCAGACTCG...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............ATCAGACTCGTACCGCCTG..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...CAACGAGCTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....AACGAGCTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........AGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................CGTACCGCCTGCGATCAGCTGGGTC............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................TA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATG.................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...............................TGCGATCAGCTGGGTCGCGATAAGG...................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
....AACGAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
........AGCTGAATCAGACTCGTAC................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...................................ATCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................GTACCGCCTGCGATCAGCTGGGTCGC..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
...................................ATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

droYak3

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGGGCAC------------------------------GGACGTCCAGCG-ATCCATACATATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCATGTTCCAACCAACAA-ATA-AA-------------TATG---------C-------------TACCACAC---------AACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................CAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	21	1	3.00	3	2	0	0	0	0	0	1	0	0	0	0
.......................................GCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	19	2	2.00	4	0	0	0	0	0	0	4	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..................................GATCAGCTGGGTCGCGAT.......................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............GAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................ACCGCCTGCGATCAGCTGGGTC............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............ATCAGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................ATCAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCGAT.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGCTGGGTCG...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TATA----------------CAGAAT---CAC----------------------ACTGAACACA----GCAT..................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................GCGATCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........TGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................CGTACCGCCTGCGATCAGC..................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................AGACTCGTACCGCCTGCGATCAGCT.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................GTACCGCCTGCGATCAGCTGG...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................GACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............GAATCAGACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................TCAGCTGGGTCGCGATA......................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................AGACTCGTACCGCCTGCG........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGC..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................TGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............AATCAGACTCGTACCGCCTG..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................GCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................CGTACCGCCTGCGATCAGCTG................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................TCAGCTGGGTCGCGATAAGG...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................GATCAGCTGGGTCGCGATAA.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGTTGGGTCGTGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCCATCAG------------------------------GGACGCCCAGCG-ATCCATACATATA----------------CAGAAT---TAC----------------------ACAGAACA-----CGCATGTTCCAACCA---A-ATA-AA---------------AG---------C-------------AACCACAC---------AACT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCACAATGAGCTGAATCAGACTCGTACCGCCTGCGATCAGTTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCAAAAAG------------------------------GGACGCCCAGCG-ATCCACACATATA----------------CAGAAT---GAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-ATA-AA----------------G---------C-------------AATCACAC---------AACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-CGACA-----------------------------------AGTGGCGCCCGAGCAG------------------------------GGACGCCGATCG-ATCCACACATATA----------------CAGAAT---TAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-ATA-AA----------------G---------C-------------CAACACAC---------AACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGACCAG------------------------------GGACGCCCAGCG-ATTCATACATATATA--------------CAGAAAT--TAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-AAAAAA-------------AAGA---------C-------------AACCACAC-------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCCCGACCAG------------------------------GGACGCCCAGCG-ATTCATACATATATA--------------CAGAAT---TAC----------------------ACTGAACA-----CGCATGTTCCAACCAAGA----A-AA-------------AATG---------C-------------AACCACAC-------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCACAACGAGCTCAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATG--TGTCG-CGATA-----------------------------------ACTGGCGCCCGCGTTG------------------------------GGACGCCCAGGC-ATCCATACATATA----------------CAGAAC---CAC----------------------ACTGAACA-----CGCATGTTCCAACCA---A-ATAAAA-------------AATA---------G-------------AACCACAC-------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCACAACGAGCTGAATCAGACTCGTACCGCTTGCGATCAGTTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------AGTGGCGCCCGACCAG----A------AACACCTC--CAGTC-T--GGGCGCCCAGGG-ATCCACACATATA----------------CAAAAT---CAC----------------------ACTGAACCGA---TGCATGTTTAAACCA---A-ATAAAA-------------AAAG---------C------------AAACCACAC---------AACT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGCTTCACCAG----G------ATATCATC--CTGAT-G--TGGCGCCCAGGG-ATACACACATATAAA--------------CAGAATA--TAC----------------------ACTGAACA-----TGCATGTTCCAATAA---A-ATAAAA-------------AATA---------AAATCAAAAATATAAACCACAC---------A---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................GCCTGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	22	1	11.00	11	0	0	0	0	1	10
............................GCCTGCGATCAGCTGGGTCG...........................................................................................................................................................................................................................................................................................	20	1	10.00	10	1	0	0	2	0	7
........AGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	20	1	9.00	9	4	0	0	0	0	5
.......................................GCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	19	1	8.00	8	2	0	0	0	4	2
...............TCAGACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	6
............................GCCTGCGATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	27	1	5.00	5	1	0	0	0	0	4
...CAACGAGCTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5
.........GCTGAATCAGACTCGTACCGCCT...........................................................................................................................................................................................................................................................................................................	23	1	4.00	4	2	0	0	0	0	2
......................................AGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
..................GACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	21	1	4.00	4	4	0	0	0	0	0
..................GACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	4
..................GACTCGTACCGCCTGCGATCAGC..................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
......................CGTACCGCCTGCGATCAGCTGGGTC............................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
................CAGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
............GAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	19	1	3.00	3	2	0	0	0	0	1
............GAATCAGACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	3
................CAGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCGATA......................................................................................................................................................................................................................................................................................	25	1	3.00	3	2	0	0	0	0	1
...............................TGCGATCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	26	1	3.00	3	1	0	0	0	0	2
..............ATCAGACTCGTACCGCCTGCGATCAGC..................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCGATAAGG...................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
......................CGTACCGCCTGCGATCAGC..................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...................................ATCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	1
....................................TCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
........AGCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	1
.............AATCAGACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
...............TCAGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
......................................AGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
................................GCGATCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATA......................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	1	0
.........GCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	1	0
............GAATCAGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
.........GCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	1
................CAGACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	1
.......................................GCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
......................CGTACCGCCTGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
..................GACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
............GAATCAGACTCGTACCGCCT...........................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGC..........................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
.....................................CAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	0	0	0	0	1
.......GAGCTGAATCAGACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................GTACCGCCTGCGATCAGCTGGG..............................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................CCGCCTGCGATCAGCTGGGTCG...........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................CAGACTCGTACCGCCTGCGATCAGCT.................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
......CGAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................ACCGCCTGCGATCAGCTGGGT.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............TCAGACTCGTACCGCCTGCGATCAGCT.................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........TGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................AGACTCGTACCGCCTGCGATCAGC..................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................ATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
...................ACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........GCTGAATCAGACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
CCACAACGAGCTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................CGTACCGCCTGCGATCAGCT.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGCT.................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................GCCTGCGATCAGCTGGGTCGCGA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................ACCGCCTGCGATCAGCTGGGTC............................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................GTACCGCCTGCGATCAGCTGGGTCG...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............AATCAGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................TCAGCTGGGTCGCGATAAGG...................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................CAGCTGGGTCGCGATAAGG...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
....AACGAGCTGAATCAGACTCG...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................AGACTCGTACCGCCTGCG........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......................GTACCGCCTGCGATCAGCTGGGTC............................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....ACGAGCTGAATCAGACTCGT..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.............................CCTGCGATCAGCTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................ACCGCCTGCGATCAGCTGGG..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......GAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................CCGCCTGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................CGCCTGCGATCAGCTGGGTCG...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............TCAGACTCGTACCGCCTGCG........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................CCTGCGATCAGCTGGGTCGCGA........................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................AGACTCGTACCGCCTGCGATCAGCTG................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................CTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................GATCAGCTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................AGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..ACAACGAGCTGAATCAGAC......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............ATCAGACTCGTACCGCCTGCG........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................TCGTACCGCCTGCGATCAGCTGG...............................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................CAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................CTGCGATCAGCTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............TCAGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............AATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGCTG................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGCTGGGTC............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....AACGAGCTGAATCAGACTC....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................AGACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................AGCTGGGTCGCGATAAGG...................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
............GAATCAGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................ATCAGCTGGGTCGCGATA......................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..ACAACGAGCTGAATCAGACTCG...................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................CGCCTGCGATCAGCTGGGTCGCG.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................GACTCGTACCGCCTGCGATCAGCTGG...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................G----G------ATATCATC--CTGAT-G--TGGC............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...............TCAGACTCGTACCGCCTGCGATCAGCTG................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
...............TCAGACTCGTACCGCCTGCGATCAG...................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................CAGACTCGTACCGCCTGCGATCAGC..................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................GTACCGCCTGCGATCAGCTGG...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................AGACTCGTACCGCCTGCGATCAGCTGGG..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................CTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	18	4	0.25	1	1	0	0	0	0	0

droBip1

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAATA--TGTCG-TGATA-----------------------------------ACTGGCGACCCACCAG----G------AT--ACTC--CTGAC-A--GGTCGCCCAGGG-ATACACACATATATA--------------CAGAATGTACAC----------------------ACTGAACA-----TGCATGTTCCAA------A-ATAAATGATAA--------AAAA---------A-------------AACCACAC---------AA-T	Size	Hit Count	Total Norm	Total
No Reads

dp5

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGATGGGTCGCGATAAGGTAATA--TGTCG-CGATC-----------------------------------ACAAGCACCCAACCCCAGAGGTCTGCAAAACCCTC--TGGGT-T--GGGTGCCTTATG-GTCCACACATATCTGAATACGAGTACACACAGAAC---CACCACTGAACACTGAAAACTTAAAACTGAACA-----CGCATGTTCCAACCA---A----------------------AG---------C-------------T-CCACAC---------AACT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...CAACGAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	8	0	0	0	0	0	0
......CGAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	1	0	5	0	0	0	0	0	0
....AACGAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	6	0	0	0	0	0	0
.....ACGAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	5	0	0	0	0	0	0
..ACAACGAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	1	0	4	0	0	0	0	0	0
............................GCCTGCGATCAGATGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	4	0	0	0	0
.....ACGAGCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	3	0	0	0	0	0	0
.......................................GATGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	0	0	0	1	0	0	0	0
............GAATCAGACTCGTACCGCCT...........................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	2	0	0	0	1	0	0	0	0
............................GCCTGCGATCAGATGGGTC............................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	0	0	0	1	1	0	0	0
...................................ATCAGATGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0	0	0	0
...CAACGAGCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.......GAGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0
..........................CCGCCTGCGATCAGATGGGT.............................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	1	0	0	0	0
....AACGAGCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	2	0	0	0	0	0	0
..........................CCGCCTGCGATCAGATGGGTCGCG.........................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0
.......................................GATGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	1	0	0	0	0	0	0
..................................GATCAGATGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0
................................GCGATCAGATGGGTCGCGATAAGGCTG................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................CCGCCTGCGATCAGATGGGTC............................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	1	0	0	0	0
.................AGACTCGTACCGCCTGCG........................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGATGGGTCGCG.........................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0	0	0	0
............................GCCTGCGATCAGATGGGTCGCGAT.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......GAGCTGAATCAGACTCGTA.................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CAGACTCGTACCGCCTGCGATCAGATG................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........GCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................AGATGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...CAACGAGCTGAATCAGACTCGTACCGCCT...........................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................TCAGATGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................CGATCAGATGGGTCGCGAT.......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GAGCTGAATCAGACTCGTACCG..............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....ACGAGCTGAATCAGACTCGTACCGCCT...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AGACTCGTACCGCCTGCGATCAGA..................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGATGGGTC............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................AGACTCGTACCGCCTGCGATCAGATGGGC.............................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...CAACGAGCTGAATCAGACTCGTACCG..............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TCGTACCGCCTGCGATCAGATGGGTC............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................GCCTGCGATCAGATGGGTCGCGATA......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................GTACCGCCTGCGATCAGATGGGTCGCG.........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................CGCCTGCGATCAGATGGGTCGCG.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......CGAGCTGAATCAGACTCGTA.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CGAGCTGAATCAGACTCGTAC................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................GATCAGATGGGTCGCGAT.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........AGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AGACTCGTACCGCCTGCGATCAGATG................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............GAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGATGGGT.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................AGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................CAGACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....AACGAGCTGAATCAGACTC....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............TCAGACTCGTACCGCCTGCGATCAGATG................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................CAGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................CCTGCGATCAGATGGGTC............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................CTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GAATCAGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................ATCAGATGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............ATCAGACTCGTACCGCCTGCGATCAGAT.................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................ATCAGATGGGTCGCGATA......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................CGTACCGCCTGCGATCAGAT.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................CGTACCGCCTGCGATCAGATG................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........GCTGAATCAGACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...CAACGAGCTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGATGGGTCG...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................TCGTACCGCCTGCGATCAGA..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................GACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................TCAGATGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............TCAGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGATGGGTCGCGATAAGGTAATA--TGTCG-CGATC-----------------------------------ACAAGCACCCAACCCCAGAGGTCTGCAAAGCCCTC--TGGGT-T--GGGTGCCTTATG-GTCCACACATATCTGAATACGAGTACACACAGAAC---CACCACTGAACACTGAAAACTTAAAACTGAACA-----CGCATGTTCCAACCA---A----------------------AG---------C-------------T-CCACAC---------AACT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................GATGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	19	1	8.00	8	0	0	0	0	0	8
............................GCCTGCGATCAGATGGGTCG...........................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3
...................................ATCAGATGGGTCGCGATA......................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	3
........AGCTGAATCAGACTCGTACC...............................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0
...................................ATCAGATGGGTCGCGATAA.....................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
............................GCCTGCGATCAGATGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
............................GCCTGCGATCAGATGGGTCGCG.........................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.......................................GATGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	0	0	1
.........GCTGAATCAGACTCGTACCG..............................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................GTCCACACATATCTGAATACGAGTA..........................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.......................................GATGGGTCGCGATAAGGCTG................................................................................................................................................................................................................................................................................	20	3	1.33	4	0	0	0	0	0	4
..................GACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........................TACCGCCTGCGATCAGATGGGTCGCG.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..................GACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................................AGATGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...........................CGCCTGCGATCAGATGGGTC............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................CAGACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...............TCAGACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......GAGCTGAATCAGACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
............................GCCTGCGATCAGATGGGTCGCGA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................CGCCTGCGATCAGATGGG..............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.......................................GATGGGTCGCGATAAGGTA.................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...CAACGAGCTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................................GATCAGATGGGTCGCGATA......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.................AGACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................GATCAGATGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................CGCCTGCGATCAGATGGGT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.CACAACGAGCTGAATCAGA.......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droWil2

CCACAACGAGTTGAATCAGACTCGCACTGCTTGCGATCAATTGGGTCGCGATAAGGTAATA--TGTCGGTCATAT-GTCCCG---TCGCTG-TGGGATTGAAATCT-----------------------------------CTAAGCGAGTTCAG--CGGGCATATG-CACCACACATATA----------------CAC-----------------------------------------------------CAA----CAACACC-AA---------------AA---------A-------------AACTACAC-------TGAACT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........TGAATCAGACTCGCACTGCT............................................................................................................................................................................................................................................................................................................	20	1	10.00	10	10	0	0	0	0
..................................GATCAATTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	24	1	6.00	6	6	0	0	0	0
............GAATCAGACTCGCACTGCT............................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0
....................CTCGCACTGCTTGCGATCAATTGGGTCGC..........................................................................................................................................................................................................................................................................................	29	1	3.00	3	2	0	0	0	1
.........GTTGAATCAGACTCGCACT...............................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
.......................................ATTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	18	3	2.00	6	6	0	0	0	0
........AGTTGAATCAGACTCGCACTGCT............................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
..ACAACGAGTTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
.........GTTGAATCAGACTCGCACTGCTTGC.........................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	1	0	0	0
............................GCTTGCGATCAATTGGGT.............................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
.....................................CAATTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
..................GACTCGCACTGCTTGCGATCAATTGGTC.............................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0
.......................................ATTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	19	3	1.67	5	3	0	2	0	0
.............AATCAGACTCGCACTGCT............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.........................ACTGCTTGCGATCAATTGGGTCG...........................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...........................TGCTTGCGATCAATTGGGT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
CCACAACGAGTTGAATCA.........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
................CAGACTCGCACTGCTTGCGATC.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...........TGAATCAGACTCGCACTGC.............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
...CAACGAGTTGAATCAGACT.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
...................ACTCGCACTGCTTGCGATCAATTGGGTCG...........................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
......................................AATTGGGTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
.................................CGATCAATTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
..........TTGAATCAGACTCGCACTGCT............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.........GTTGAATCAGACTCGCACTGC.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
......................CGCACTGCTTGCGATCAATTGGGTCGC..........................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
.....................................CAATTGGGTCGCGATAAG....................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
........................CACTGCTTGCGATCAATTGGGTCG...........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
...................................ATCAATTGGGTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
............GAATCAGACTCGCACTGCG............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
...........TGAATCAGACTCGCACTGCTTGC.........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0

droVir3

CCACAATGAGTTGAATCAAACTCGTACCGCCTGCGATCAGTTGGCTCGCGATAAGGTAATA--TGTCGGCCATAT-GCAACGTGTTCGC-GATC-----------TCCTACTGGCGATCGTGA----------------------------CTACGG--GGCAAATG-GACCACACATATACACCTAATTAAATACATAGA-----TAC----------------------A----CTA-----CGCATGTAACACACA---C-ACA-CA---------------CA---------C-------------AGACACAC---------ACAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................ACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGAATCAAACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AATGAGTTGAATCAAACTCGT..................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CCGCCTGCGATCAGTTGGCTCGC..........................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GTTGGCTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................CTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ACAATGAGTTGAATCAAACTCG...................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTCGTACCGCCTGCGATCAGT..................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TGA----------------------------CTACGG--GGCAAATG-GAC................................................................................................................................................................	20	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AATGAGTTGAATCAAACTCG...................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CCGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACTCGTACCGCCTGCGATCAGTT.................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGTTGGCTCGC..........................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGTTGGCTCGC..........................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATGAGTTGAATCAAACTCGTAC................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TGA----------------------------CTACGG--GGCAAATG-GACCA..............................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ACAATGAGTTGAATCAAACTCGTA.................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TGA----------------------------CTACGG--GGCAAATG-GACC...............................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGTT.................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CCGCCTGCGATCAGTTGGCTCGCGA........................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGT..................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTACCGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATG-GACCACACATATACACCT.................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGTTGGCTC............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTCGTACCGCCTGCGATCAGTTGGCTCG...........................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AATGAGTTGAATCAAACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCGATCAGTTGGCTCGCGA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATCAGTTGGCTCGCGATAA.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGTTGGCTCGCGATAAG....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................GATCAGTTGGCTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTCGTACCGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGAATCAAACTCGTACCGCC............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CAATGAGTTGAATCAAACTC....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CAAACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGTTGGCTCGCG.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAAACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CTGCGATCAGTTGGCTCGC..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGCCTGCGATCAGTTGGCTCGC..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATCAGTTGGCTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATGAGTTGAATCAAACTCGTACC...............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGCCTGCGATCAGTTGGCTCGCGAT.......................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAACTCGTACCGCCTGCGATCAGTTG................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATCAGTTGGCTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTACCGCCTGCGATCAGTTGG...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATCAAACTCGTACCGCCTG..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CCTGCGATCAGTTGGCTCGC..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGTTGAATCAAACTCGTACC...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGAATCAAACTCGTACCGCCTGCG........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGTTGGCTCGCGAT.......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGTACCGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................CCGCCTGCGATCAGTTGGCTCGCGAT.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTCGTACCGCCTGCGATCAGTTG................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAACTCGTACCGCCTGCGATCAGTT.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GCCATAT-GCAACGTGTTCG...................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGTTGGCTCGCG.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CAGTTGGCTCGCGATAAGGCT.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCTGCGATCAGTTGGCTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TCAGTTGGCTCGCGATAAGGC..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................TCGTACCGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGAATCAAACTCGTACCGCCTGCGAT......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GAATCAAACTCGTACCGCCTGC.........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATCAGTTGGCTCGCGATAAG....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCAAACTCGTACCGCCTGCGATCA....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCTCGCGATAAGGTAATA--TGTC........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTCGTACCGCCTGCGATCC....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGTTGGCTCGCGATAA.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAGTTGAATCAAACTCGTACC...............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CCTGCGATCAGTTGGCTCGCGATAA.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAACTCGTACCGCCTGCGATCAGT..................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCGATCAGTTGGCTCGCGAT.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CCGCCTGCGATCAGTTGGCTCGCG.........................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATCAGTTGGCTCGCGAT.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATGAGTTGAATCAAACTCGTACCGCCT...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTACCGCCTGCGATCAGTTGGCTCGC..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TAT-GCAACGTGTTCGC-GATC-----------T.................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGCCTGCGATCAGTTGGCTCGCG.........................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TCGTACCGCCTGCGATCAGT..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AATCAAACTCGTACCGCCTG..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACTCGTACCGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TACCGCCTGCGATCAGTTGGCTCGCG.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGTACCGCCTGCGATCAGTT.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCCTGCGATCAGTTGGCT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGTACCGCCTGCGATCAGTTGGCTCG...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CACAATGAGTTGAATCAAACTCGT..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAACTCGTACCGCCTGCGATC.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CAATGAGTTGAATCAAACTCG...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTCGTACCGCCTGCGATCAG...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTCGTACCGCCTGCGATCAGTT.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AATGAGTTGAATCAAACTCGTACC...............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTACCGCCTGCGATCAGTTGGCTCT...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGAGTTGAATCAAACTCGTACC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTACCGCCTGCGATCAGT..................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCGATCAGTTGGCTCGCGATA......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTACCGCCTGCGATCAGTTT................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGAGTTGAATCAAACTCGTA.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AACTCGTACCGCCTGCGATCAGT..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................ACA-CA---------------CA---------C-------------AGACACAC---------ACA.	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................C-ACA-CA---------------CA---------C-------------AGACACAC---------ACA.	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCACAATGAGTTGAATCAAACTCGTACCGCCTGCGATCAGTTGGCCCGCGATAAGGTAATA--TGTTG-TGGCA-----------------------------------TATGG-------------------------------------------------------GCCACACATATAC-------------------------------------------------ACCGAACACACAACGCATGTACCAC--A---A-ACA-CA-------------AACA---------C-------------ACACACACGCACACA--CTCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..ACAATGAGTTGAATCAAACTCG...................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................ACTCGTACCGCCTGCGATCAGTTGGCC.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................TACCGCCTGCGATCAGTTGGCC.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................GTACCGCCTGCGATCAGTTGGCCCGC..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..ACAATGAGTTGAATCAAA.......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
..................AACTCGTACCGCCTGCGATCAGTTGGCC.............................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................CCCGCGATAAGGTAATA--TGTTG-TG....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................AACTCGTACCGCCTGCGATCAGT..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droGri2

CCACAATGAGTTGAATCAAACTCGTACCGCCTGCGATCAGTTGGCTCGCGATAAGGTAATATATGTCGGACATATTGCAACTGGGTCGCTGATCCGATTCTGATCT--------------CGA---------------------------TCTAT--GTGGCATATGTGGCCACACATATACA--------------CCTAAT---TAC----------------------ACAC---A-----CTCACG-AACACACA---C-ACA-CA-----CACAGACAAAAGCATGTGCCAC-------------AAACACAC---------ACCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................GCCTGCGATCAGTTGGCTCGCG.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
...CAATGAGTTGAATCAAACTCGTACCG..............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0

dsi_260

2l:16350797-16350867 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.8	-28.1