ID:

dsi_25997

 Coordinate:

3l:11482019-11482168 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.4 -31.4 -31.0 -31.0

Flybase annnotation

CDS [3l_11482169_11482221_-]; exon [3l_11482169_11482221_-]; intron [3l_11480218_11482168_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCGTGTGAGTGTGCTGGAGGCATTCGATCCCCTGCTAAACGACAATACTGGTAAGCAGCCTCAATGTTGTAATTAACGTGTAGCTCCCGGTCCTCGTGAAATCCCCCCACATTTTTCGCACCGTAAACTAAACTTGAAATACAGTCGAAAACTCGTGTGTTGCGATTCTTGGCCAGAGCATTCATTTGAGCTGCAAATAAAAATGATTGGCATAATAAAATTAGTTGATTTTTCAACTGCAGTTCTAGGA
**************************************************.((..(((.(((((.............(((..((((..((((.((((((........(((((((((((.((.(((..............))).))))))))...))))))))))).....)))).))))...)))))))))))....)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..................................................................TTGTAATTAACGTGTAGCTCCCG................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................AATTAACGTGTAGCTCCC.................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TTTGAGCTGCAAATAAAGATGATTGGCA...................................... 28 1 1 1.00 1 0 0 1 0 0 0 0
...................................TATACCCCAATACTGGTAAG................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................AATAGAATTAGTTGATT.................... 17 1 7 0.14 1 0 0 0 1 0 0 0
....................................................................................................................................................................ATTCTGGGCCATAGCAT..................................................................... 17 2 13 0.08 1 0 0 0 1 0 0 0
...............................................CTGGTAGGCACCCTCAA.......................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 1
...........................................................................ACGTTTAGCTCCGGGT............................................................................................................................................................... 16 2 18 0.06 1 0 0 0 0 0 1 0
.........................GATCCCCTGCTAAGGG................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

GGCACACTCACACGACCTCCGTAAGCTAGGGGACGATTTGCTGTTATGACCATTCGTCGGAGTTACAACATTAATTGCACATCGAGGGCCAGGAGCACTTTAGGGGGGTGTAAAAAGCGTGGCATTTGATTTGAACTTTATGTCAGCTTTTGAGCACACAACGCTAAGAACCGGTCTCGTAAGTAAACTCGACGTTTATTTTTACTAACCGTATTATTTTAATCAACTAAAAAGTTGACGTCAAGATCCT
**************************************************.((..(((.(((((.............(((..((((..((((.((((((........(((((((((((.((.(((..............))).))))))))...))))))))))).....)))).))))...)))))))))))....)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.................................CGAGTTGCTGCTATGACC....................................................................................................................................................................................................... 18 2 6 0.83 5 4 1 0 0 0
.................................CGAGTTGCTGCTATGACCA...................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................GACTTTTATTTTTGCTAGCCG....................................... 21 3 9 0.11 1 0 1 0 0 0
....................................................................................................................................................................................................................................AAAAAGTTCACTTCAAGAT... 19 2 9 0.11 1 0 0 1 0 0
................................GCGAGTTGCTGCTATGACC....................................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0
...................................GCTTGCTTTTATGACCATTC................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1
...................................................................................................................................................TTTTGAGAACACAAGGCT..................................................................................... 18 2 16 0.06 1 0 0 1 0 0
................................ACGATTTGCCGTAATG.......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0
.....................TAAGCTTGGGGACAAT..................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:16 AM