ID:

dsi_25972

 Coordinate:

3l:7213061-7213210 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-0.5 -0.4 0.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

TGTTATACAAATGCGATTCGTATACTATTAACGACAAATTGTTAATGTTTTATGCAGACACTATAAAATCAACACAAATGAACGCAACTATATATTGAAATAATGATAATGATGCACTGCACGGCAGGTTTTTGCACATTGCACCACCTAAAAAATATATACATATATTATATATATAAATATATATATTTTTATTGTAGTTATACACTTGAAAGAAACAAAATGATATAACGGGCAAGAGAAACCGGAA
********************************************************************...............(((..(((.((((........))))))).)))..........***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 O001
Testis
 SRR902008
ovaries
 M024
male body		 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
................................................................................................................................................................................................................................GATATAACGGGCAAGAGAAACCGGAA 26 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0
....................................................................TCAACACAAATGAACGCAACTATATA............................................................................................................................................................ 26 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.....TACAAATGCGATTCGTATACTAT.............................................................................................................................................................................................................................. 23 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATACACTTGAAAGAAACATAATGATA...................... 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATATATTTTTATTGTAGTTAT.............................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAATGATAATGATGCACTGCACGGC............................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TACACTTGAAAGAAACAAAATGATATAA................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGTTATACACTTGAAAGA.................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................AATGCACTGCACGGCAGGT......................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TGATAATGATGCACTGCACGGCAGGT......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAATGATACTGATGCACTGCACGGCAGGT......................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AACAAAATGATATAACGGGCAAGAGA........ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........TGCGATTCGTATACTATTAACGACAA..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................TCAACACAAATGAACGCAACTATATAT........................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................TTTTATGCAGACACTATAAAATCAACAAAA............................................................................................................................................................................. 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAAAATGATATAACGGGCAA............ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGATATAACGGGCAAGAGAAAC..... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATGATACTGATGCACTGCACGGCAGGT......................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................AATCAACACAAATGAACGCAACT................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................ATAATGATAATGATGCACTG................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............GATTCGTATACTATTAACGAC....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGATATAAGGGGCAAGAAA........ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....ATACAAATGCGATTCGTATACTATT............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........TGCGATTCGTATACTATTAACGACA...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AACAAAATGATATAACGGGCA............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATACACTTGAAAGAAACAAAATGATAAA.................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................TTCGTATACTATTAACGACAAATTGT................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TGCAGACACTATAAAATCAACACAAA............................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGATATAACGGGCAAGAGAAACCGGA. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGAAACAAAATGATATAACGGGCAAGAGA........ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTATTGTAGTTATACACTTGAAAGA.................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATACACTTGAAAGAAACAAAATGATA...................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....TACAAGTATGATTCGTATACTATT............................................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TGAACGCAACTATATATTGAAATAATG................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATGATATAACGGGCAAGAGA........ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...TATACAAATGCGATTCGTATACTA............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................AAATTGTTAATGTTTTATGC................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........AATGCGATTCGTATACTATTAAC.......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.GTTATACAAATGCGATTCGTA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TGAACGCAACTATATATTGAAATAATGAT............................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTAATGTTTTATGCAGACAC............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................TATATTTTTATTGTAGTTATACACT......................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....TACAAATGCGATTCGTATACTATT............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................TAATGAAATAATGATACTGATGCACTGC.................................................................................................................................. 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TTATGCAGACACTATAAAATCAACAAA.............................................................................................................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AATAATGATACTGATGCACTGCACGGC............................................................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAATGATATAACGGGCAAGAGAAAC..... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGAACGCAACTATATATTGAAATAATGA................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTATTGTAGTTATACACTTGAAAG................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCACGGCAGGTTTTTGCACATTGC............................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................CACTATAAAATCAACACAAATGAACGCAAC.................................................................................................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........AAATGCGATTCGTATACTATTAACG......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GGCTGGTTTTCGCAGATTGC............................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................CTATAAGATCAACAGAAA............................................................................................................................................................................ 18 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AATGATATGACGGGGAA............ 17 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........AAATGCGATACGTAT................................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................TACTATTAACGTCTAAT................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................TTAACGACAGAGTGTTA.............................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACAATATGTTTACGCTAAGCATATGATAATTGCTGTTTAACAATTACAAAATACGTCTGTGATATTTTAGTTGTGTTTACTTGCGTTGATATATAACTTTATTACTATTACTACGTGACGTGCCGTCCAAAAACGTGTAACGTGGTGGATTTTTTATATATGTATATAATATATATATTTATATATATAAAAATAACATCAATATGTGAACTTTCTTTGTTTTACTATATTGCCCGTTCTCTTTGGCCTT
*****************************************************************************************************************************...............(((..(((.((((........))))))).)))..........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.......................TGATAATTGCTGTTTAACAAT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................ACGTGTAACGTGGTGGATTTT................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................ATATAAAAATAACATCAATAT............................................. 21 0 1 1.00 1 0 0 1 0 0
................................................................................................................................................................................................................AACGTTCTTTGTTTTACT........................ 18 1 4 0.25 1 0 0 0 1 0
...............................................................................................................................................................................................................GCATGTTCTTTGTTTTACTAT...................... 21 3 10 0.10 1 0 0 0 1 0
.......................................................................................................................GTGCAGTCCAAACACGT.................................................................................................................. 17 2 10 0.10 1 0 0 0 0 1

Generated: 04/23/2015 at 09:59 PM