ID:

dsi_25968

 Coordinate:

x:20706326-20706475 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.1 -9.0 -8.7

Flybase annnotation

exon [x_20706476_20706615_-]; five_prime_UTR [x_20706476_20706615_-]; intron [x_20692716_20706470_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGTCTCGACCAATTCACATGTTATTTGGCTTTATGTGGCCAGACTTGGTGAGTATTGAGTATTGGTTTTCATAGCCGAAAACCATTTTATTTAATAGGAACACGAAGGACTGTAACTTTTCTTAAAAGTCTCCTACAGTTATGCTTATATACCTTTCACGTTACAAGAATCTTAAGATCTTTTGACAACAATAGTTATTGGGTATTTTTTTAGGTTTTGACTGACCATCTACCGTTTTTTAATTAACTC
*******************************************************************************************.....(((......((((((((((((((((...))))))....)))))))...))).....)))...............******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
...........................................................................................TTAATAGGAACACGAAGGACTGTAACTT................................................................................................................................... 28 0 1 5.00 5 2 3 0 0 0 0
............................................................................................TAATAGGAACACGAAGGACTGTAACTT................................................................................................................................... 27 0 1 3.00 3 2 1 0 0 0 0
.................................................................................................................................................TTATATACCTTTCACGTTACAAGAA................................................................................ 25 0 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTAATAGGAACACGAAGGACTGTAAC..................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................AGGACTGTAACTTTTCTTAAAAGTC....................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................................TCTTAAGATCTTTTGACAACAATAGT...................................................... 26 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................................CACGAAGGACTGTAACTTTTCTTA............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAGGAACACGAAGGACTGTAACTTT.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................TCTTAAGATCTTTTGACAACAATAGTTATT.................................................. 30 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TGGGTATTTTTTTAGGTTTTGACTGAC........................ 27 0 1 1.00 1 0 1 0 0 0 0
........................................................................................TATTTAATAGGAACACGAAGGACTGTAAC..................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTAATAGGAACACGAAGGACTGTAAC..................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................TTTCACGTTACAAGAATCTTAAGATC...................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................GAAGGACTGTAACTTTTCTTAAAAGTC....................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................TAGCCGAAAACCATTTTATTTAATAGGA...................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................TTTTATTTAATAGGAACACGAAGGAC........................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTAATAGGAACACGAAGGACTGTAACTT................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
....................................TGGCCAGACTTGGTGAGTATTGAGTA............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................TAGGAACACGAAGGACTGTAACTTTTC................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
................................................................................................AGGAACACGAAGGACTGTAACTTTTC................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................TCACGTTACAAGAATCTTAAGATCT..................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TAATAGGAACACGAAGGACTGTAAC..................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................TCTTAAGATCTTTTGACAACAATAGTTT.................................................... 28 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TAATAGGAACACGAAGGACTGTAACTTT.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................ATCTTAAGATCTTTTGACAACAAT......................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................TCTTAAGATCTTTTGACAACAAT......................................................... 23 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................TATTGGGTATTTTTTTAGGTTTTGAC............................ 26 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................TTTTCTTAAAAGTCTCCTACAGTTATG.......................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................TGTAACTTTTTTTAAAA.......................................................................................................................... 17 1 7 0.14 1 0 0 0 1 0 0
.............................................................................................................................................................................TAAGATCTTTTAACAACA........................................................... 18 1 9 0.11 1 0 0 0 0 1 0
.............................................................................................................................................................................................CAATCGTTATTGGGT.............................................. 15 1 11 0.09 1 0 0 0 0 0 1
...............................................................................................................................................................................................................TTTTTAGGTTTTGAATAA......................... 18 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CGCAGAGCTGGTTAAGTGTACAATAAACCGAAATACACCGGTCTGAACCACTCATAACTCATAACCAAAAGTATCGGCTTTTGGTAAAATAAATTATCCTTGTGCTTCCTGACATTGAAAAGAATTTTCAGAGGATGTCAATACGAATATATGGAAAGTGCAATGTTCTTAGAATTCTAGAAAACTGTTGTTATCAATAACCCATAAAAAAATCCAAAACTGACTGGTAGATGGCAAAAAATTAATTGAG
********************************************************************************.....(((......((((((((((((((((...))))))....)))))))...))).....)))...............******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
..........................................................................CGGCTTTTGGTAAAATAAATTATCCTT..................................................................................................................................................... 27 0 1 2.00 2 0 1 0 0 0 1 0 0
..............................................................................................................................................................................TTCAAGAAAACTGTTGTCACCA...................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................AGTGCAATGTTCTTAGAATTCTAGA..................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................CTGTTGTTATCAATAACCCAT............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................GTGCAATGTTCTTAGAATTCTAGAAAA.................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................TGAAAAGAATTTTCAGAGGATGTCAAT............................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................ATCCAAAACTGACTGGTAGATGGCAA............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTGACTGGTAGAAGGCTAA............ 19 2 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................GCAGCCTGACATTGAAAA................................................................................................................................. 18 2 3 0.67 2 0 0 0 0 0 0 2 0
...............................................................................................................................CCAGAGGATGTCAATATG......................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................TGCCATGTTCTTAGA............................................................................. 15 1 6 0.17 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTTATCAATGACGCATAA........................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0
.....................................................................................................................AAAAGATTTTTCTGAGGA................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................TCAATGACCCATAAA.......................................... 15 1 19 0.05 1 0 0 0 0 1 0 0 0
.........................................................................TCGGCTTTCGAGAAAATAAA............................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................AACGTATCGGCTTTT........................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGGACTGCTAGATGG................ 15 2 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:20706276-20706525 - dsi_25968 GCGTCTC-GACCAATTCACATGTTATTTGGCTTTATGTGGCCAGACTTGGTGAGTATTGAGTATTGGTTTTCATAGC---CGAAAACCATTTTATTTAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TCTTAAAAGTCTCCTA---------------CAGTTA-----TGCTTATA---------------------------------------------------------TACCTTT---------------CACGTTACAAGAATCTT--------------AAGATCTTTTG-------ACAACAATAGTTAT---TGG--------------GTA--------------------------------TT----TTTTTAGGTTTTGACTGACC-ATCTACC-------------GTTT--TTTAATTAA-CTC
droSec2 scaffold_109:10645-10802 + AAAAAC--------------------------------------------------------ATTGGTTTCCTCAAT---AGGAC--------ACTCAA--AAA------ACCAAA-ATACTTTTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--A---------------TTTTAAAAATCTCTTA---------------TCGATA-----TATCGA-----------T-----TAA-------------------T-------------------------------------------------TAAAAATTT--------------AAACTTATATG-------TAAATAAAAGCC----CAGAATCGCGAGTTT-----------------------T-------------------TTTTTGCG-----------------------------------A-T--ATCAAATAA-CTT
dm3 chrX:22246347-22246644 - GCGGCTC-GATCACTTCACATATCATTTGGCTTTATGTGGCCAGACTTGGGG-----TGAGTATTGATTTTTATAGC---CGAAAACTATTTCATTTAA--TAG------GAACAA-GAAGGATTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TATTAAAAGCATCTTG---------------CAATTA-----TGCTTG-GGACACTCCAT-----GAAATTAATTTGGCTTATATTC-GTTTAATAGTTATGTAATATACCTTT---------------CACGTTACAAGAATCTT--------------AAGATGGTTTG-------ACAGCAATAGTTAG---TGG--------------GTA--------------------------------TTT--TGTTTTAGGTTTTGACTGAACGATCTACA--------------TTT--TTTAATTGATTTC
droEre2 scaffold_4690:18528534-18528806 - GCGGCTC-GGCCACTTCACATGTCATTTGGCTTTATGTGGCCAGACTTGGGG-----TGAGTATTGGCTTTTATAGC---CGAAAAACGTATTATTTAA--TAG------GACCGA-GCAGGTCTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TCGTAAAAGCCCCTCA---------------CGATTA-----TGTTTG-GGACACTTCAT-----CGAATAATTACGGTTTATATTC-GATTGATAATTAAGTGATTAACC--------------------------------------------------------TTTG-------ACAATGACAAGTTT---TGG--------------GTA--------------TTTT-------------------TTTTTTTGATTTTGACTGACAGCGCTATA--------------TTTTTAATAAGTAA-TTC
droYak3 X:21609492-21609725 - GCGGCTC-GACCACTTCACATATCAT-TGGCTTTATGTGGCCTGACTTGGGG-----TGAGTATTGGTTTTCATAGC---CGAAAAACATATTATTGAA--TAG------GAACGA-GCAGGTCTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTT---------------TCTTAAAAGCCTCTTT---------------CGATTA-----TGTAT-------------TTTAATA---------------------GTTTAATAA-----------------------------------------------TT--------------AAGATGGGGTG-------ACAATATTAGTT-T---TGG--------------ATA--------------------------------T-----GTTTTAGATTTTAACAGACC-AACTATA--------------TTTTAATAAAGTAA-TTC
droEug1 scf7180000409181:152691-152924 - AGATTTT-TATGAATTTAAATTTTTT----------GTAATAAGATTTT--------TATGTATTGATATTTGTACA---TAAATATT----------------------------------TAT--A---------TT----------------------------TT------------------------------------------------------------------------------------------------TAAG----T----ATTAACATTTTTGGTATTGTTATTTTTAGG-----------TTTTAATATTTTTATG---------------TATTTA-----TATTCCTA---------------------------------------------------------TATATTT---------------TT-------AAATATTT--------------AAATT--------TTTA------------------------------------------------TATACT--GATATTTTTATGCATTAATAATTTTAAATTTTTGTTTAAT-ATTTATT-------------TATT--TATACATTG-ATG
droBia1 scf7180000302059:2454-2631 - TATTGTT-TATAA------------------------------------------------------------AAGC---CATAAGCGGCTTGGTTTCA--CGG------GTTGGA--T--AACTCTC------CTCCTT----------------------CTAAAATGGATCGTCCCGA--------------TTCAATA-------------------------TGTAGTTCACTTAATTGATC--------------------------------------------------------------TCTTAATTCTGTTAAAAAATGTTCTT---------------GGCTTA-----TGG--------------------------------------------------------------------------------------------------------------------------------------ATCTTTCTGGTTC---TGG--------------CTA--------------TT------------------------------------------------GT-------------TTTT--TTGGATTAA-CAA
droTak1 scf7180000410655:18016-18191 + GCCTCTC-GCCCACTTCATATATCATTTGACTTTATGTGGCCTGATTTGGGG-----TGAGTATTGGTTTTTATGGC---CAGAAA---TATTAACGAA--TAG------CAACAG-A-------------------------------------------------------------------------------------------------------------------------------------------------------TATAGACAACTC------------------AATTT---------------TTTTAAAAGGGTGCTT---------------TGTTTA-----TGTTCG-GGACTGTTCAT-----CGA-------------------T-------------------------------------------------TGG----------------------------------------------------------------------------------------------------------------------------------------------------------GATT--TTAAATTCT-TTT
droEle1 scf7180000491087:616453-616654 + GCCTACC-GCCCACTTCATATATCATTTGTCTTTATGTGGCCTGATTTGGGG-----TGAGTATTGGCTTTTATGGC---CAGAGA---TATTAAAGCA--TAG------CAAACG-A-------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCAATGTC------------------CATTT---------------TTTCAAAAGGCTCTTT---------------TGTTTA-----TGTTTG-GCACATTTCGT-----CGA-------------------T-------------------------------------------------AGATGTCTT--------------AAAT-------TCTCTTTAAAA--------------GG------------------------------------------------------------------------------GT-------TTTT------G----TTTTTTTTT-TGA
droRho1 scf7180000778980:5558-5756 - GTGTTGAAGATTAAATTATA-----------------------------------------------TTTTCATGGA---TAAAAA---TGTTTTTTAT--TAA------TGATTT-TCATTGGC---------TTTTCG----------------------CAAAACTT--------------AATATTATGGATACAATACGC-CTTTCAAAGTCT-----------------------------------------------------------------------------------------------------AATGAAAAGTGTATTA---------------CAG-------------------------------TGG-------------------T-------------------------------------------------TCTTAGCTT--------------AGAA-------TTTTTT------------------------------------------------TAAACT--GATTTTC-------------------G-----AAATCAAAAATTTGAA------------CATTT--TACAATTAT-TTT
droFic1 scf7180000453910:722968-723146 - TTTAACT-TAATT-GT----------------------------------------------------------------TAAATAAAAGAGA-CTTA-AAT-TTTGCCAAAAGAAC----TATTATT---ATATTTTTTTTGAGTGGGAATAAAGGTGTTA------CA--------------ATTTAT------------------------------------------------------------------------------------------T------------------TATTT--------------TATTAATAATTATTTTT---------------GGTAAA-------------------------------------------------------------------------------------------------------------TTGATGGAAA---------------------------------------------------------------------------------------------------------ATTTCAAAAACCGATCTCCT--ACTTTTATTTCATTT--TATA-ATCA-ATT
droKik1 scf7180000302766:22954-23163 - ATTTAAT-------------------------------------------------------ATAAATTTCCATTTT---TTAAAAATACCCCGTATAA--CAA------AAACGC-AAATGT----G--------------------------------------------GCTTCCAAT--------------TTTATTA-------------------------GAGCGTTCAATTAAATGCTCTAAGCCATCAATAACGTCAACA----G------------------------------------------------------------------AGAAATTATATGTTAAATTTTTTTTAT-TGCAACTTCAT-----CAC-------------------A-------------------------------------------------AGCTATTAT--------------GCAT-------TCTTTTT-------CAGATTC---AGT--------------------------------------------------------------------------C-ATTTCCT-------------TC----ATTTTATTT-CCT
droAna3 scaffold_13258:746083-746261 - TGATAAT-TATCATAC---A-----------------------------------------------TTTTTTCGTT---CAGAAA-TATCACTTAATT--TAA------GAATGC-AAAAATGCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCA---------------ATTCAAGAATATTTTG---------------GATATT-----TGATTGTA-------TATCTTTTTA---------------------GACTCATTA-----------------------------------------------TA--------------TAGATATATTA-------ACATCATTATTTTTCCTTCGATCTTTC-----------------------------------------------------------------------GTACT-------------ATTC--AAAATTGAA-CTG
droBip1 scf7180000395327:3758-3910 - TTTTCAT-AAA---------------------------------------------------------------ATC---CCAAAATTAATATTTTTAA--TAA------AGACGA-AAAGAAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA---------------AAATAAAATTGTTCAT---------------TA-------------------------------------------------------------------------------TATACATGG----TACA-----------------ATGAAAATAATACT-------TCTT--------------------T---AGG--------------ATA----------------------------------------------TTTTACTATCCC-TACTATACTATTCTT------A----CTTTACTAT-CCT
dp5 Unknown_group_290:6145-6306 + TAGTTAT-TTTAA---------------------------------------------------------------A---AAATAACTATTTTTTTTAT--TGG------TAATAT-TTTTTTTT-------------------------------------------AT--------------ATCTTTATATATTA--TGTTG-TATTTA-AAAAATTTTGGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------TTGAAATATA----TATATATATTC-------TGTTTTTTA-TT-----------------TTTATTTATTAATCTTTTTTAGCC----------------------------------------------------------------TAT--CCTTATGAA-CTT
droPer2 scaffold_6:5958928-5959091 - TTTTCAT-TTTAA-AA----------------------------------------------------------------TAAATAATATTTAATTTAA--TAA------TATCAA-ATAATTT------------------------------------------------------------AATATTAAATATTC--TGCTC-CAATTA-AATCTAACGAATAT---TTTAC-ATTAAATAA------------------------TGGAATA--------------------------------------ATTTTTTT-A------TTTAC--------------------G-----ATTTTT-GTATATTTTGT-----TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATT-------------AATT--TTTATTTTA-GTG
droWil2 scf2_1100000004921:2330238-2330411 + GTCTTAT-TGACCGATTATATTTCAATTTA------------------------------------------GTAGCGACAAAAAATA------ACAA-AAT-TTCACTGGAAAGAC----TGTTAT-----------C----------------------------TC------------------------------------------------------------------------------------------------AAAA----A------------------------------------------------------------------GAAAACAAAACCTTGAGT-----------------------------------------------------------------------TTCATTGATCAT-TGATGA-----------------TTGAAAACATTGCT-------T-------------------------------------------------------------------------------------TTATTATGTTTCAATAGACA-AATTACA-------------GATT--TTTAATTAA-TAT
droVir3 scaffold_12855:7308029-7308195 - AAAAAAA---------------------------------------------------------------------------------------------------------ACAA-AAGGAAATACAACTTTACTTCCT----------------------TAAA-----ATCGTTCCTGTTTTGCATTTTATAATC--TTATCTTATTGA-GAATATTTTAAAAT-------------------------------------------------------------------------------------------------------------------------------TT-----TATTTA-AAAAAAT----------------------------------------------------------------------------------------------------------------------------------TGCT----TACAATTTTTAGTATCATTCACAGTTTTTTATAAACT-------------------------------------------TGT--------TATT------A----TTATTTTAT-TAT
droMoj3 scaffold_6496:25880588-25880843 + GATTTGC-AACTGGTTTATGTGTCATTTGGCTATATCTGGCCAGACTGGTGC-----ACCGTAG--AGCGTTATTGC---TTGGAA---TATTG------------------------------------------------------------------------------------------------------------------------------------------TTTTCTATATTTA-------------------------------------------------------------GTCTCGAGTTTCTATTTTA-AACGGGTATAGCGTACGGACTATATGTT---------------------------------------------------------------TGAGTTTTTTATTGTATTGGTTATATGGTCC-----------------TTAAAAGTAAGCCT-------TTTG-------ACAAGTGTAATACG---CAA--------------GTA--------------------------------CCT--GAAATTCGGTTCCAACTTAAT-ATATTCC-------------GAGC--CCAATCTGA-TGT
droGri2 scaffold_14906:6025597-6025688 - TATTTTA-ATATACCTTCCACATCTTTTGACTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTG-ATACTTTTTGCTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTATAAATTGACG-ACTTATC--------------A-C--TTTAATCAT-CAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGTCTC-GACCAATTCACATGTTATTTGGCTTTATGTGGCCAGACTTGGTGAGTATTGAGTATTGGTTTTCATAGC---CGAAAACCATTTTATTTAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TCTTAAAAGTCTCCTA---------------CAGTTA-----TGCTTATA---------------------------------------------------------TACCTTT---------------CACGTTACAAGAATCTT--------------AAGATCTTTTG-------ACAACAATAGTTAT---TGG--------------GTA--------------------------------TT----TTTTTAGGTTTTGACTGACC-ATCTACC-------------GTTT--TTTAATTAA-CTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................TTAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT.........................................................................................................................................................................................................................................................................................................................................2815.00500000023000000000
................................................................................................TAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT.........................................................................................................................................................................................................................................................................................................................................2713.00300000021000000000
............................................................................................................................................................................................................................................................................................................................................................................TTATA---------------------------------------------------------TACCTTT---------------CACGTTACAAGAA...........................................................................................................................................................................2513.00300000030000000000
..............................................................................................TTTAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC...........................................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
.......................................................................................................................AGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TCTTAAAAGTC..............................................................................................................................................................................................................................................................................................................2512.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTT--------------AAGATCTTTTG-------ACAACAATAGT............................................................................................................................2612.00200000011000000000
.................................................................................................................CAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TCTTA....................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.....................................................................................................TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------.........................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTT--------------AAGATCTTTTG-------ACAACAATAGTTAT---T.....................................................................................................................3011.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG--------------GTA--------------------------------TT----TTTTTAGGTTTTGACTGAC.........................................2711.00100000001000000000
............................................................................................TATTTAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC...........................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
...............................................................................................TTAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC...........................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---------------CACGTTACAAGAATCTT--------------AAGATC...................................................................................................................................................2611.00100000010000000000
.....................................................................................................................GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TCTTAAAAGTC..............................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.........................................................................TAGC---CGAAAACCATTTTATTTAA--TAG------GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.........................................................................................TTTTATTTAA--TAG------GAACAC-GAAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..............................................................................................TTTAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT.........................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.....................................TGGCCAGACTTGGTGAGTATTGAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.....................................................................................................TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TC.......................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
......................................................................................................AG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TC.......................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------CACGTTACAAGAATCTT--------------AAGATCT..................................................................................................................................................2511.00100000010000000000
................................................................................................TAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC...........................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTT--------------AAGATCTTTTG-------ACAACAATAGTTT..........................................................................................................................2811.00100000010000000000
................................................................................................TAA--TAG------GAACAC-GAAGGACTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------.........................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTT--------------AAGATCTTTTG-------ACAACAAT...............................................................................................................................2411.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTT--------------AAGATCTTTTG-------ACAACAAT...............................................................................................................................2311.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---TGG--------------GTA--------------------------------TT----TTTTTAGGTTTTGAC.............................................2611.00100000000100000000
.............................................................................................................................................................................................................................................................................................................TTT---------------TCTTAAAAGTCTCCTA---------------CAGTTA-----TG.............................................................................................................................................................................................................................................................................2711.00100010000000000000
droSec2
AAAAAC--------------------------------------------------------ATTGGTTTCCTCAAT---AGGAC--------ACTCAA--AAA------ACCAAA-ATACTTTTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--A---------------TTTTAAAAATCTCTTA---------------TCGATA-----TATCGA-----------T-----TAA-------------------T-------------------------------------------------TAAAAATTT--------------AAACTTATATG-------TAAATAAAAGCC----CAGAATCGCGAGTTT-----------------------T-------------------TTTTTGCG-----------------------------------A-T--ATCAAATAA-CTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GCGGCTC-GATCACTTCACATATCATTTGGCTTTATGTGGCCAGACTTGGGG-----TGAGTATTGATTTTTATAGC---CGAAAACTATTTCATTTAA--TAG------GAACAA-GAAGGATTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TATTAAAAGCATCTTG---------------CAATTA-----TGCTTG-GGACACTCCAT-----GAAATTAATTTGGCTTATATTC-GTTTAATAGTTATGTAATATACCTTT---------------CACGTTACAAGAATCTT--------------AAGATGGTTTG-------ACAGCAATAGTTAG---TGG--------------GTA--------------------------------TTT--TGTTTTAGGTTTTGACTGAACGATCTACA--------------TTT--TTTAATTGATTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................TAG------GAACAA-GAAGGATTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT..........................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTTATGTGGCCAGACTTGGGA-----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................TTTAA--TAG------GAACAA-GAAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTGGGG-----TGAGTATTGATTTTTATAGC---C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGTTAG---TGG--------------GTA--------------------------------TTT--TG...........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATGTGGCCAGACTTGGGG-----TGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GGCCAGACTTGGGG-----TGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA--------------------------------TTT--TGTTTTAGGTTTTG...............................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TATGTGGCCAGACTTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CACTTCACATATCATTTGGCTTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TTCATTTAA--TAG------GAACAA-GAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGACTTGGGG-----TGAGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GCCAGACTTGGGG-----TGAGTATTGATTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTATGTGGCCAGACTTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AATTA-----TGCTTG-GGACACT.................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................ACAA-GAAGGATTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TATTAAA..................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AGGATTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TATTA....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTCACATATCATTTGGCTTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CAATTA-----TGCTTG-GGACACT.................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTC-GATCACTTCACATATCATTTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTAG---TGG--------------GTA--------------------------------TTT--TGTTTTAGGTT..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACTGAACGATCTACA--------------TT................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTAAAAGCATCTTG---------------CACC......................................................................................................................................................................................................................................................................................18120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
droEre2
GCGGCTC-GGCCACTTCACATGTCATTTGGCTTTATGTGGCCAGACTTGGGG-----TGAGTATTGGCTTTTATAGC---CGAAAAACGTATTATTTAA--TAG------GACCGA-GCAGGTCTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT---------------TCGTAAAAGCCCCTCA---------------CGATTA-----TGTTTG-GGACACTTCAT-----CGAATAATTACGGTTTATATTC-GATTGATAATTAAGTGATTAACC--------------------------------------------------------TTTG-------ACAATGACAAGTTT---TGG--------------GTA--------------TTTT-------------------TTTTTTTGATTTTGACTGACAGCGCTATA--------------TTTTTAATAAGTAA-TTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................GGCCAGACTTGGGG-----TGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
GCGGCTC-GACCACTTCACATATCAT-TGGCTTTATGTGGCCTGACTTGGGG-----TGAGTATTGGTTTTCATAGC---CGAAAAACATATTATTGAA--TAG------GAACGA-GCAGGTCTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTT---------------TCTTAAAAGCCTCTTT---------------CGATTA-----TGTAT-------------TTTAATA---------------------GTTTAATAA-----------------------------------------------TT--------------AAGATGGGGTG-------ACAATATTAGTT-T---TGG--------------ATA--------------------------------T-----GTTTTAGATTTTAACAGACC-AACTATA--------------TTTTAATAAAGTAA-TTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................ACATATCAT-TGGCTTTATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................T-------------TTTAATA---------------------GTTTAATAA-----------------------------------------------A........................................................................................................................................................................1890.22202000000000
droEug1
AGATTTT-TATGAATTTAAATTTTTT----------GTAATAAGATTTT--------TATGTATTGATATTTGTACA---TAAATATT----------------------------------TAT--A---------TT----------------------------TT------------------------------------------------------------------------------------------------TAAG----T----ATTAACATTTTTGGTATTGTTATTTTTAGG-----------TTTTAATATTTTTATG---------------TATTTA-----TATTCCTA---------------------------------------------------------TATATTT---------------TT-------AAATATTT--------------AAATT--------TTTA------------------------------------------------TATACT--GATATTTTTATGCATTAATAATTTTAAATTTTTGTTTAAT-ATTTATT-------------TATT--TATACATTG-ATGSizeHit CountTotal NormTotal
No Reads
droBia1
TATTGTT-TATAA------------------------------------------------------------AAGC---CATAAGCGGCTTGGTTTCA--CGG------GTTGGA--T--AACTCTC------CTCCTT----------------------CTAAAATGGATCGTCCCGA--------------TTCAATA-------------------------TGTAGTTCACTTAATTGATC--------------------------------------------------------------TCTTAATTCTGTTAAAAAATGTTCTT---------------GGCTTA-----TGG--------------------------------------------------------------------------------------------------------------------------------------ATCTTTCTGGTTC---TGG--------------CTA--------------TT------------------------------------------------GT-------------TTTT--TTGGATTAA-CAASizeHit CountTotal NormTotal
No Reads
droTak1
GCCTCTC-GCCCACTTCATATATCATTTGACTTTATGTGGCCTGATTTGGGG-----TGAGTATTGGTTTTTATGGC---CAGAAA---TATTAACGAA--TAG------CAACAG-A-------------------------------------------------------------------------------------------------------------------------------------------------------TATAGACAACTC------------------AATTT---------------TTTTAAAAGGGTGCTT---------------TGTTTA-----TGTTCG-GGACTGTTCAT-----CGA-------------------T-------------------------------------------------TGG----------------------------------------------------------------------------------------------------------------------------------------------------------GATT--TTAAATTCT-TTTSizeHit CountTotal NormTotal
No Reads
droEle1
GCCTACC-GCCCACTTCATATATCATTTGTCTTTATGTGGCCTGATTTGGGG-----TGAGTATTGGCTTTTATGGC---CAGAGA---TATTAAAGCA--TAG------CAAACG-A-------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCAATGTC------------------CATTT---------------TTTCAAAAGGCTCTTT---------------TGTTTA-----TGTTTG-GCACATTTCGT-----CGA-------------------T-------------------------------------------------AGATGTCTT--------------AAAT-------TCTCTTTAAAA--------------GG------------------------------------------------------------------------------GT-------TTTT------G----TTTTTTTTT-TGASizeHit CountTotal NormTotal
No Reads
droRho1
GTGTTGAAGATTAAATTATA-----------------------------------------------TTTTCATGGA---TAAAAA---TGTTTTTTAT--TAA------TGATTT-TCATTGGC---------TTTTCG----------------------CAAAACTT--------------AATATTATGGATACAATACGC-CTTTCAAAGTCT-----------------------------------------------------------------------------------------------------AATGAAAAGTGTATTA---------------CAG-------------------------------TGG-------------------T-------------------------------------------------TCTTAGCTT--------------AGAA-------TTTTTT------------------------------------------------TAAACT--GATTTTC-------------------G-----AAATCAAAAATTTGAA------------CATTT--TACAATTAT-TTTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTAACT-TAATT-GT----------------------------------------------------------------TAAATAAAAGAGA-CTTA-AAT-TTTGCCAAAAGAAC----TATTATT---ATATTTTTTTTGAGTGGGAATAAAGGTGTTA------CA--------------ATTTAT------------------------------------------------------------------------------------------T------------------TATTT--------------TATTAATAATTATTTTT---------------GGTAAA-------------------------------------------------------------------------------------------------------------TTGATGGAAA---------------------------------------------------------------------------------------------------------ATTTCAAAAACCGATCTCCT--ACTTTTATTTCATTT--TATA-ATCA-ATTSizeHit CountTotal NormTotal
No Reads
droKik1
ATTTAAT-------------------------------------------------------ATAAATTTCCATTTT---TTAAAAATACCCCGTATAA--CAA------AAACGC-AAATGT----G--------------------------------------------GCTTCCAAT--------------TTTATTA-------------------------GAGCGTTCAATTAAATGCTCTAAGCCATCAATAACGTCAACA----G------------------------------------------------------------------AGAAATTATATGTTAAATTTTTTTTAT-TGCAACTTCAT-----CAC-------------------A-------------------------------------------------AGCTATTAT--------------GCAT-------TCTTTTT-------CAGATTC---AGT--------------------------------------------------------------------------C-ATTTCCT-------------TC----ATTTTATTT-CCTSizeHit CountTotal NormTotal
No Reads
droAna3
TGATAAT-TATCATAC---A-----------------------------------------------TTTTTTCGTT---CAGAAA-TATCACTTAATT--TAA------GAATGC-AAAAATGCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCA---------------ATTCAAGAATATTTTG---------------GATATT-----TGATTGTA-------TATCTTTTTA---------------------GACTCATTA-----------------------------------------------TA--------------TAGATATATTA-------ACATCATTATTTTTCCTTCGATCTTTC-----------------------------------------------------------------------GTACT-------------ATTC--AAAATTGAA-CTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTTCAT-AAA---------------------------------------------------------------ATC---CCAAAATTAATATTTTTAA--TAA------AGACGA-AAAGAAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA---------------AAATAAAATTGTTCAT---------------TA-------------------------------------------------------------------------------TATACATGG----TACA-----------------ATGAAAATAATACT-------TCTT--------------------T---AGG--------------ATA----------------------------------------------TTTTACTATCCC-TACTATACTATTCTT------A----CTTTACTAT-CCTSizeHit CountTotal NormTotal
No Reads
dp5
TAGTTAT-TTTAA---------------------------------------------------------------A---AAATAACTATTTTTTTTAT--TGG------TAATAT-TTTTTTTT-------------------------------------------AT--------------ATCTTTATATATTA--TGTTG-TATTTA-AAAAATTTTGGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------TTGAAATATA----TATATATATTC-------TGTTTTTTA-TT-----------------TTTATTTATTAATCTTTTTTAGCC----------------------------------------------------------------TAT--CCTTATGAA-CTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------TTGAAATATA----TATATATATTC-------TGTT...................................................................................................................................2712.0020000000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTTTTTTAGCC----------------------------------------------------------------TAT--CCTTATG......2512.0020000000020
....................................................................................................................................................................................................TA--TGTTG-TATTTA-AAAAATTTTGGTA......................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000200
..........TAA---------------------------------------------------------------A---AAATAACTATTTTTTTTAT--TGG------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000200
............................................................................................................................T-------------------------------------------AT--------------ATCTTTATATATTA--TGTTG-TATT......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
droPer2
TTTTCAT-TTTAA-AA----------------------------------------------------------------TAAATAATATTTAATTTAA--TAA------TATCAA-ATAATTT------------------------------------------------------------AATATTAAATATTC--TGCTC-CAATTA-AATCTAACGAATAT---TTTAC-ATTAAATAA------------------------TGGAATA--------------------------------------ATTTTTTT-A------TTTAC--------------------G-----ATTTTT-GTATATTTTGT-----TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATT-------------AATT--TTTATTTTA-GTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GTCTTAT-TGACCGATTATATTTCAATTTA------------------------------------------GTAGCGACAAAAAATA------ACAA-AAT-TTCACTGGAAAGAC----TGTTAT-----------C----------------------------TC------------------------------------------------------------------------------------------------AAAA----A------------------------------------------------------------------GAAAACAAAACCTTGAGT-----------------------------------------------------------------------TTCATTGATCAT-TGATGA-----------------TTGAAAACATTGCT-------T-------------------------------------------------------------------------------------TTATTATGTTTCAATAGACA-AATTACA-------------GATT--TTTAATTAA-TATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAAAAAA---------------------------------------------------------------------------------------------------------ACAA-AAGGAAATACAACTTTACTTCCT----------------------TAAA-----ATCGTTCCTGTTTTGCATTTTATAATC--TTATCTTATTGA-GAATATTTTAAAAT-------------------------------------------------------------------------------------------------------------------------------TT-----TATTTA-AAAAAAT----------------------------------------------------------------------------------------------------------------------------------TGCT----TACAATTTTTAGTATCATTCACAGTTTTTTATAAACT-------------------------------------------TGT--------TATT------A----TTATTTTAT-TATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GATTTGC-AACTGGTTTATGTGTCATTTGGCTATATCTGGCCAGACTGGTGC-----ACCGTAG--AGCGTTATTGC---TTGGAA---TATTG------------------------------------------------------------------------------------------------------------------------------------------TTTTCTATATTTA-------------------------------------------------------------GTCTCGAGTTTCTATTTTA-AACGGGTATAGCGTACGGACTATATGTT---------------------------------------------------------------TGAGTTTTTTATTGTATTGGTTATATGGTCC-----------------TTAAAAGTAAGCCT-------TTTG-------ACAAGTGTAATACG---CAA--------------GTA--------------------------------CCT--GAAATTCGGTTCCAACTTAAT-ATATTCC-------------GAGC--CCAATCTGA-TGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................TATAGCGTACGGACTATATGTT---------------------------------------------------------------TGAG...................................................................................................................................................................................................................2611.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATTGGTTATATGGTCC-----------------T......................................................................................................................................................................21100.101100000
droGri2
TATTTTA-ATATACCTTCCACATCTTTTGACTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTG-ATACTTTTTGCTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTATAAATTGACG-ACTTATC--------------A-C--TTTAATCAT-CATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:42 PM