ID:

dsi_25957

 Coordinate:

2r:5660903-5661182 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.9 -48.9 -48.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+

Sense Strand Reads

CCTCAACGACGATTGCTGTCCTTCCGGAGTTTGCGTCAGCACATACGGCGGTAAGTTGGTCTAATTGCAATTGGTCCACTGTGACCCAACCCACTCACTTACGCTGGAAATAGTTAATGCTGTTGCTTTTAAAATAGATTAAATACTTGCTTAAATTTTATAATAAAGTGGGCACCAGACTGAAACTGGGGTTAGAATCTACTTGGCTATCGATCTGGATCAAGAGCATATACATATACTTTAAAGGGTTTGAAGGGTTTCTTTCTATCTATTGTACTATTTTAATAGAAACAAGGATACATTTTCTATAATAACTCCATCATTTTGTAGAAGGCAAATGCGTATATGTGTTTGGTCGTCAGCGGGATCTGTGCCAGGGA
**************************************************..((((.........(((..((((((((...(((.(((((((......(((..((((......(((((.(((((........)))))))))).....((((((..(((......))).))))))))))..))).....))))...........)))...)))...))))))))..))).........))))....(((((.(((((((.(((((...(((((((........)))))))...))))).)).)))))......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................................................................ACTGAAACTGGGGTTAGAATC..................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................ACTGGGGTTCGAATCT.................................................................................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................AATTAGTTAAGACTGTTGCTT............................................................................................................................................................................................................................................................ 21 3 11 0.55 6 0 1 5 0 0 0 0 0
........................................................................................................................................................................................................................................................CTTGAAGGGTTTGTTTCTGTCT.............................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TAGGATCTACTTGGCTGTTGAT...................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................TTGAAGGGTTTGTTTCT.................................................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0 0 0
...........................................................................................................AATTAGTTAAGACTGTTGCT............................................................................................................................................................................................................................................................. 20 3 17 0.47 8 0 4 4 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TATGCGTATAAGTGTTTGG......................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................TTAATAGTAAGAAGGACACA............................................................................... 20 3 9 0.22 2 0 0 0 0 0 0 2 0
...........................................................................................................................................................................................................................TCATGAGCGTATACATATA.............................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................CAGGAACTGGGGTTCGAATC..................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTGAAGGGTTTGATTCT.................................................................................................................. 17 2 20 0.10 2 2 0 0 0 0 0 0 0
......................................................GTTGGTCTAAATGGATTTGGT................................................................................................................................................................................................................................................................................................................. 21 3 12 0.08 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................TGGGTTTGGTCGTCA................... 15 1 13 0.08 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................TCCATGATTTTGAACAAGGC............................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................................TCTATTGTACTATCCTA................................................................................................ 17 2 14 0.07 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................TTGAAGGGCATGAAGGGTTT........................................................................................................................ 20 3 15 0.07 1 0 0 0 0 0 1 0 0
......................................................................................................................GTTGTTGCTTTTAAAA...................................................................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGAGTTGCTGCTAACGACAGGAAGGCCTCAAACGCAGTCGTGTATGCCGCCATTCAACCAGATTAACGTTAACCAGGTGACACTGGGTTGGGTGAGTGAATGCGACCTTTATCAATTACGACAACGAAAATTTTATCTAATTTATGAACGAATTTAAAATATTATTTCACCCGTGGTCTGACTTTGACCCCAATCTTAGATGAACCGATAGCTAGACCTAGTTCTCGTATATGTATATGAAATTTCCCAAACTTCCCAAAGAAAGATAGATAACATGATAAAATTATCTTTGTTCCTATGTAAAAGATATTATTGAGGTAGTAAAACATCTTCCGTTTACGCATATACACAAACCAGCAGTCGCCCTAGACACGGTCCCT
**************************************************..((((.........(((..((((((((...(((.(((((((......(((..((((......(((((.(((((........)))))))))).....((((((..(((......))).))))))))))..))).....))))...........)))...)))...))))))))..))).........))))....(((((.(((((((.(((((...(((((((........)))))))...))))).)).)))))......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
..................AGGAAGGCCTCAAACGGAAAC..................................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................AGGTACTAAAACTTGTTCCGTT........................................... 22 3 2 0.50 1 0 1 0 0 0 0
................ACAGGAAGGTCTCAAACGGAA....................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.40 2 0 0 2 0 0 0
..................AGGAAGGTCTCAAACGGA........................................................................................................................................................................................................................................................................................................................................................ 18 2 8 0.38 3 2 0 0 0 1 0
.....................................................................................................................................................................................................................AGACCTAGTTCTCTT........................................................................................................................................................ 15 1 7 0.14 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................GTTATTGCGGTAGTAAAACAC................................................... 21 3 7 0.14 1 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................AAATTATTTTTGTTGCTAT................................................................................. 19 2 13 0.08 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................TTAAATTATTTTTGTTGCTAT................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0
........TCCTTACGACAGGAAG.................................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................................TAATTGAGGTAGTAA........................................................ 15 1 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 09:01 PM