ID:

dsi_25941

Coordinate:

3r:10525099-10525248 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10524569_10525102_+]; CDS [3r_10524569_10525102_+]

No Repeatable elements found

Sense Strand Reads

######################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTGCTCAACAGGGACGAGTCGGTGAGGCAGAGAGATGCCACGAGAATGATGTAAGTGATGATTAACTTGATTTATTAAAGATTATTTAATAAGAGAGTCCTTCGGTGAGAGGGTGATGCAAGTTTAAGTTTAAAAATAATTGTACTTTTCTTGGCTTAATATAACAGGTTGCTAATTTTATATCATTTTTAAAGGAAGCCAAGTTTAGTCTCAGTTCATTCTGATTGAAGTCTTCTTTTATCAGCTTTCA ************************************************..((((((((....((((..(((((((((.....))))))))).))))(((((.....))))).....((((...((((.(((......))).))))..))))((((........))))...........))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	O002 Head	M024 male body	M023 head	SRR618934 dsim w501 ovaries	M053 female body
....................................................................................................................................................................................................................AGTTCGTTCTGATTGATGTCA.................	21	3	4	2.00	8	8	0	0	0	0	0	0
....................................................................................................................................................................................................................AGTTCGTTCTGATTGATGTCT.................	21	2	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................................................................................................................................TCAGTTCAGTCTGATTGAATT...................	21	2	1	1.00	1	0	1	0	0	0	0	0
.......................................ACGAGAATGATGTAAGTG.................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................................AAGTTCGTTCTGATTGATGTCT.................	22	3	1	1.00	1	1	0	0	0	0	0	0
.........................................GAGAATGATCTATGTGAT...............................................................................................................................................................................................	18	2	3	0.33	1	1	0	0	0	0	0	0
....................................................................................................................TGCAAGGTTAAGACTAAAAA..................................................................................................................	20	3	20	0.30	6	0	0	0	3	2	0	1
...................................................................................................................................................................................................................AAGTTCGTTCTGATTGATGTC..................	21	3	5	0.20	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................TCTCAGTCCATTCTG...........................	15	1	10	0.10	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................AAAGAAGTCTTCTTTTA..........	17	2	20	0.10	2	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................ATTCTGATCGAAGTGTT................	17	2	16	0.06	1	0	0	0	0	0	1	0
.....CAACCAGGACGTGTCGGTG..................................................................................................................................................................................................................................	19	3	17	0.06	1	0	1	0	0	0	0	0

Anti-sense strand reads

CACGAGTTGTCCCTGCTCAGCCACTCCGTCTCTCTACGGTGCTCTTACTACATTCACTACTAATTGAACTAAATAATTTCTAATAAATTATTCTCTCAGGAAGCCACTCTCCCACTACGTTCAAATTCAAATTTTTATTAACATGAAAAGAACCGAATTATATTGTCCAACGATTAAAATATAGTAAAAATTTCCTTCGGTTCAAATCAGAGTCAAGTAAGACTAACTTCAGAAGAAAATAGTCGAAAGT ************************************************..((((((((....((((..(((((((((.....))))))))).))))(((((.....))))).....((((...((((.(((......))).))))..))))((((........))))...........))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553488 RT_0-2 hours eggs	M025 embryo
....................................................................................................................................................................................................................TCAAGCAAGACTAACTACAGT.................	21	3	4	3.00	12	12	0	0	0	0
...........................................................................................................................................................................................................AAACCAGAGTCAAGTGAGA............................	19	2	4	0.25	1	0	0	1	0	0
...........................................................................................................................................................................................................................AGACTAAGCTCAGATGAAAAT..........	21	3	5	0.20	1	0	1	0	0	0
...................................................................................................................................................................................................................TTCAAGCAAGACTAACTACAG..................	21	3	5	0.20	1	1	0	0	0	0
....................................................................................................................................................................................................................TCAAGCAAGACTAACTAC....................	18	2	10	0.20	2	2	0	0	0	0
..................................................................................................................................................................................ATATAGTAAGAGTGTCCTTC....................................................	20	3	7	0.14	1	0	0	0	0	1
................................................................................................CAGAAAGCCACTCCCCC.........................................................................................................................................	17	2	10	0.10	1	0	0	0	1	0
.................................................................................................AGAAAGCCACTCCCCCA........................................................................................................................................	17	2	11	0.09	1	0	1	0	0	0
................................................................................................CAGAAAGCCGCTCTCCC.........................................................................................................................................	17	2	14	0.07	1	0	0	0	1	0
................................................................................................CAGGAAGCGACTCTGTCAC.......................................................................................................................................	19	3	14	0.07	1	0	0	0	0	1
................................................................TGAACTAAATAATGCCT.........................................................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0

Generated: 04/24/2015 at 10:44 AM