ID:

dsi_25920

 Coordinate:

2r:4872021-4872081 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4871477_4872020_+]; CDS [2r_4871477_4872020_+]; CDS [2r_4872082_4872235_+]; exon [2r_4872082_4872316_+]; intron [2r_4872021_4872081_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
TTCACTAACGATTTGACCGATGTGAGTCGTGGCGGAGCTCTGCGTCTAAGGTGAGTAGCTCTTTCTCGCTTTTCGTTAACAGTTGTTCTAATTTTGTACGCTCTTTTCCAGGTCCGAGGCCAATCGGCACAAGAAGATGACCAAGATCGCTGCCAAGAAGA
**************************************************(((((.........)))))....(((..((((...........)))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
.....................................................................................................................................AAAATGACCCAGAGCGCTGCC....... 21 3 1 15.00 15 15 0 0 0 0 0 0 0 0
.......................................................................................................TTTTCAAGGTCCGAGGAGAAT..................................... 21 3 1 4.00 4 0 2 1 0 1 0 0 0 0
.......................................................................................................TTTTCAAGGTCCGAGGAGAA...................................... 20 3 6 3.50 21 0 6 13 0 1 0 1 0 0
......................................................................................................................................AAATGACCCAGAGCGCTGCC....... 20 3 5 2.00 10 10 0 0 0 0 0 0 0 0
....................................................................................................................................GAAAATGACCCAGAGCGCTGCC....... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAATGACCCAGAGCGCTGC........ 20 3 12 1.58 19 19 0 0 0 0 0 0 0 0
...........................................................................................................................TCGGCACAAGAAGATGACCAAGATCGCTG......... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................GATGACCAAGATCGCTGCC....... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................GAATAGCTCTTTCTCG............................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TGAGTCGTGGCGGAGCTCTGCGTC................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................TCGGCACAAGAAGATGACCAAGATCGC........... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................ATGACCCAGAGCGCTGCCGA..... 20 3 6 0.83 5 5 0 0 0 0 0 0 0 0
.......................................................................................................TTTTCAAGGTCCGAGGAGA....................................... 19 3 20 0.55 11 0 11 0 0 0 0 0 0 0
....................................................GCGTAGCTCTTTCTCG............................................................................................. 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................TTTTCAAGGTCCGAGG.......................................... 16 1 4 0.50 2 0 0 2 0 0 0 0 0 0
........................................................................................................................................ATGACCCAGAGCGCTGCCG...... 19 3 11 0.27 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................AAATGACCCAGAGCGCTGCCA...... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................GGCACAACAAGTTGAACAAGA............... 21 3 12 0.25 3 0 0 0 0 0 0 3 0 0
........................................................................................................................................ATGACCCAGAGCGCTGCC....... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................................................TTTCAAGGTCCGAGGAGAA...................................... 19 3 16 0.25 4 0 2 2 0 0 0 0 0 0
.......................................................................................................TTTTCAAGGTCCGAGGA......................................... 17 2 16 0.25 4 0 1 3 0 0 0 0 0 0
........................................................................................................................................ATGACCCAGAGCGCTGC........ 17 2 14 0.14 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................AAATGACCCAGAGCGCTGC........ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0
......AACGATTTGCCCGCTTTGAG....................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0
.........GATTAGACCGTTGTGAGG...................................................................................................................................... 18 3 13 0.08 1 0 0 0 0 0 0 0 1 0
.........................GTCCTGGCGGAGCGCTG....................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0
...................................................................CCTTATCGTTAACAGTT............................................................................. 17 2 16 0.06 1 0 0 1 0 0 0 0 0 0
..........................TCGTGACGGCGCTCTG....................................................................................................................... 16 2 17 0.06 1 0 1 0 0 0 0 0 0 0
........................................................................................................TTTCAAGGTCCGAGGA......................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................ACGTAGCTCTTTCTCG............................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................AGCTCTTTCTCGATT.......................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................ACCAAGATCGCTGAAAA..... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................TAGCTCTTTCTCGAGTT......................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................GTTCGAATCTTGTACG............................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................................................................AGCTCGTTACCAGGTCCG............................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
......................................TCGGCCTCTAAGGTGA........................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................GAAGATGACCCAGAGCG............ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAGTGATTGCTAAACTGGCTACACTCAGCACCGCCTCGAGACGCAGATTCCACTCATCGAGAAAGAGCGAAAAGCAATTGTCAACAAGATTAAAACATGCGAGAAAAGGTCCAGGCTCCGGTTAGCCGTGTTCTTCTACTGGTTCTAGCGACGGTTCTTCT
**************************************************(((((.........)))))....(((..((((...........)))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
........................................................................................................AAAGTTCCAGGCTCCTCTT...................................... 19 3 16 47.50 760 448 11 102 75 97 5 3 11 6 1 1
.......................................................................................................AAAAGTTCCAGGCTCCTCTT...................................... 20 3 6 39.67 238 168 11 4 26 16 0 6 2 3 2 0
.......................................................................................................AAAAGTTCCAGGCTCC.......................................... 16 1 4 7.00 28 0 24 0 0 0 1 2 0 0 1 0
........................................................................................................AAAGTTCCAGGCTCC.......................................... 15 1 6 4.17 25 0 19 0 0 0 0 6 0 0 0 0
........................................................................................................................................TACTGGGTCTCGCGACG........ 17 2 14 1.36 19 0 0 0 0 0 19 0 0 0 0 0
........................................................................................................AAAGTTCCAGGCTCCTCTTA..................................... 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................CGAGAAAAGTTCCAGGCTC........................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................AAAAGTTCCAGGCTCCT......................................... 17 2 16 1.00 16 0 7 0 0 0 0 8 0 0 1 0
.......................................................................................................AAAAGTTCCAGGCTCCTCT....................................... 19 3 20 0.90 18 0 12 3 0 0 1 1 0 0 1 0
......................................................................................................................................TTTACTGGGTCTCGCGACG........ 19 3 20 0.60 12 0 0 0 0 0 12 0 0 0 0 0
....................................................................................................................TCGGGTTAGCCGTGTGCT........................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................CTTTTACTGGGTCTCGCGACG........ 21 3 6 0.33 2 0 0 0 0 0 2 0 0 0 0 0
......................................................................................................TAAAAGTTCCAGGCTCC.......................................... 17 2 14 0.29 4 0 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................................TTTTACTGGGTCTCGCGACG........ 20 3 12 0.25 3 0 0 0 0 0 3 0 0 0 0 0
.........................................................................................................AAGTTCCAGGCTCCTCTTA..................................... 19 3 12 0.17 2 0 0 0 1 1 0 0 0 0 0 0
.....................................................................................................................................TTCTACTGGTTCAACCGATGG....... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1
......................................AGACGTAGATTCCAC............................................................................................................ 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................AAAGTTCCAGGCTCCTTTTA..................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................AAAGAGGTCCAGGCTCC.......................................... 17 2 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................GAAAAAGGTCCAGGCTCCT......................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................AACAGGATTAAAGCATG.............................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................AAGAGGGCCAGGCTCC.......................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................TCCAGGCTCCGGGAAG.................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Generated: 04/23/2015 at 07:41 AM