ID:

dsi_2592

Coordinate:

3l:7477125-7477274 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-21.1	-20.8	-20.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTGAAATTACGAACAAAAAAAAGGTAGATTTTGTATCTAAGAATCTGTAGAACTAGTTCCCCCGATCATTGATATCTGCCCACCTCTGATCGACAGCAGGCGAACACTTTGATGTTATTTATGCGACTTGACCGTGCACCTTCTCGGCCGGTTTGAACCACAATTCATGGCTCGTTTTCCACTGATCTTACCATTGCAGCTCCTGCCCCTTCACCGCCCCGGCAACACCCGGAACGACAGCTACAATCA ************************************************..........................((((........(((((.....((((((...((.((((((..((((........(((((.((.........)))))))))))..)))..))).)).)))))).....)))))........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries
..........................AGATTTTGTATCTAAGAA..............................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
...........................................................................TCTGCCCACCTCTGATCGACAGCAGG.....................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................ACCGCCCCGGCAACACCCGGAACG.............	24	0	1	1.00	1	1	0	0	0	0	0
.....................................................................GTGATTTCTGCCCCCCTCTGA................................................................................................................................................................	21	3	2	0.50	1	0	0	1	0	0	0
..........................................................................TTCTGCGCACCTCTGATC..............................................................................................................................................................	18	2	5	0.20	1	0	0	0	1	0	0
.................................................................................................................................................CGGACGGTTTCAACCACGA......................................................................................	19	3	8	0.13	1	0	0	0	0	1	0
.................................................................................................................................................CGGCCGGTTTGAACTTCTA......................................................................................	19	3	9	0.11	1	0	0	0	0	1	0
...................................................................................................................................................................................CCACTGATCTTTCCAT.......................................................	16	1	9	0.11	1	0	0	0	0	0	1
...................................ATCTAAGTATCTGTAGGA.....................................................................................................................................................................................................	18	2	11	0.09	1	0	1	0	0	0	0
...................................................AACTAGTACCCTCGAT.......................................................................................................................................................................................	16	2	15	0.07	1	0	0	0	1	0	0

Anti-sense strand reads

AAACTTTAATGCTTGTTTTTTTTCCATCTAAAACATAGATTCTTAGACATCTTGATCAAGGGGGCTAGTAACTATAGACGGGTGGAGACTAGCTGTCGTCCGCTTGTGAAACTACAATAAATACGCTGAACTGGCACGTGGAAGAGCCGGCCAAACTTGGTGTTAAGTACCGAGCAAAAGGTGACTAGAATGGTAACGTCGAGGACGGGGAAGTGGCGGGGCCGTTGTGGGCCTTGCTGTCGATGTTAGT ************************************************..........................((((........(((((.....((((((...((.((((((..((((........(((((.((.........)))))))))))..)))..))).)).)))))).....)))))........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
.....................................................................................AGTCTAGCTGTCGTCTCCTTGT...............................................................................................................................................	22	3	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................AAAAGGTGACTAGTAT...........................................................	16	1	4	1.00	4	3	1	0	0	0
....................................................................................................................ATAAAGATGCTGAACTG.....................................................................................................................	17	2	20	0.85	17	0	17	0	0	0
.....TCAATGCTTTTTCTTTTTCCATCT.............................................................................................................................................................................................................................	24	3	2	0.50	1	1	0	0	0	0
...............................................AATCTTGATCAAGGGG...........................................................................................................................................................................................	16	1	4	0.25	1	0	0	0	1	0
...................................................................................................................................TGGCATCTGGAAGAGCC......................................................................................................	17	2	8	0.13	1	0	0	1	0	0
................................................................................................................................................................................AAAGGTGACTAGTAT...........................................................	15	1	18	0.11	2	0	0	1	0	1
...............................................................................................................................................................................................................GGGAAGTGGCGGGTTCGTTA.......................	20	3	9	0.11	1	1	0	0	0	0
......................................................................................................................AAATATGCTGAGCTGG....................................................................................................................	16	2	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................ACGGGGCAGTGGCGG...............................	15	1	13	0.08	1	1	0	0	0	0
...............................................................................................................................................................................AAAAGGTGAGTAGAAT...........................................................	16	1	15	0.07	1	0	0	0	1	0
..............................................................................................................................................................................AAAAAGGTGACTAGTAT...........................................................	17	2	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................ACGGCGAAGTGGCGG...............................	15	1	20	0.05	1	0	0	1	0	0

Generated: 04/24/2015 at 10:12 AM