ID:

dsi_25890

 Coordinate:

3l:19710268-19710484 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -16.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAACGAAAGTGAACATCACATTTAGCGCTTCGCAGTCGCGGCTTCAACCGGTATGTGTATGTGAATGTGAGTCTGAATCTGAGTCTCAGACAGCCGATATATATGGCCATATATTTTTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACATGCGATGATTGTGGTTTTGTTTTTAGTGGTATTCCATTTTATTCTATGCGTAGTCACCGACGAGCGCTGCCCGCTGGGACTCCGTATAAAATCAGCATAATCAGAAATTCTACCCAGCAGTTCGTTCTAAGCCATCGACGGAGCCGGACGCTCATCGCGCTTTTGGC
**********************************************************************************************************************************************************************************************....((((((.((((.(((.((.((...)).)).))))))).)))))).......************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 O002
Head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR902008
ovaries
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCG..................... 18 0 1 18.00 18 17 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGAC.................. 19 0 1 15.00 15 9 6 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGGGACTCCGTATAAAATCAG........................................................................ 21 0 1 3.00 3 0 0 0 0 1 0 0 2 0 0 0 0
................................................................................................................................................................................................................................TGGGACTCCGTATAAAATCAGT....................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACGCTC.............. 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACGCT............... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGGGACTCCGTATAAAATCAGC....................................................................... 22 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATTCTATGCGTAGTCACCGACGA........................................................................................................ 23 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
..........................GCTTCGCAGTCGCGGCTT................................................................................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACGC................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACGCTCA............. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGA................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACGCTCATC........... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGG................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................GTGAAAGTGAGTCTGAATC.............................................................................................................................................................................................................................................. 19 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACGCTC.............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACGC................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACGCTCAT............ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AGCCATCGACGGAGCCGGAC.................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGTGGTTTTGTTTTTAGTG........................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTGGGACTCCGTATAAAATCAGC....................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CCATCGACGGAGCCGGACGC................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................TAAGCCATCGACGGAGCC...................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGAC.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACGCTCA............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGGATCCGGACGCTCAT............ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CCATCGACGGAGCCGGACG................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................AAGAGATGATCGTGGTTTT..................................................................................................................................................... 19 3 17 0.71 12 0 0 0 0 0 0 0 0 11 0 0 1
.............................................................................................................................................................ATTGTGGTTTTGTTTTT............................................................................................................................................... 17 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TATTATATCCGTAGTCTCCG............................................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................TGAAAGTGAGTCCGAATCTGCG.......................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GCCATCGACGGAGCTGGA................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTCCCGCACATACGA.................................................................................................................................................................. 15 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................CCATATGTTTTTCTGCTTTTGTTA........................................................................................................................................................................................... 24 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................TTTCGCCACTCCCGCAAA....................................................................................................................................................................... 18 2 7 0.29 2 0 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................CAAGAGATGATCGTGGTTT...................................................................................................................................................... 19 3 12 0.25 3 0 0 0 0 0 0 0 0 3 0 0 0
............................................................GTGAAAGTGAGTCCGAAT............................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGCCATCGACGCGGCCG..................... 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................ATACAATCACCATATTCAGA.............................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................AACCGGTCTGTGAATATGAA............................................................................................................................................................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................CTAAGCAATCGACGG.......................... 15 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................AAGTGAGTCTGAATC.............................................................................................................................................................................................................................................. 15 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................CTTCGGAGGCGCGGGTTCA............................................................................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................TGGGAATCCTTATAAACTC.......................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTGCTTTCACTTGTAGTGTAAATCGCGAAGCGTCAGCGCCGAAGTTGGCCATACACATACACTTACACTCAGACTTAGACTCAGAGTCTGTCGGCTATATATACCGGTATATAAAAAGATGAAAACAAGACAAAGCGGTCAGGGCGTGTACGCTACTAACACCAAAACAAAAATCACCATAAGGTAAAATAAGATACGCATCAGTGGCTGCTCGCGACGGGCGACCCTGAGGCATATTTTAGTCGTATTAGTCTTTAAGATGGGTCGTCAAGCAAGATTCGGTAGCTGCCTCGGCCTGCGAGTAGCGCGAAAACCG
************************************************************************....((((((.((((.(((.((.((...)).)).))))))).)))))).......********************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
................................GTCAGCGCCGAAGTTGGCCATACAC.................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................AGATCCGAATCAGTGACTG.......................................................................................................... 19 3 11 0.73 8 3 5 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAAGCAAGACTCGGT................................. 15 1 15 0.47 7 0 0 0 1 5 0 1
........................................CGAAGTTGGGCATGCACA................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................GTCCTATTAGTCCTTAAGA........................................................ 19 2 3 0.33 1 0 0 0 0 0 1 0
................................................................................................................................AGAAAAAGCGGTGAGGGCGTTT....................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................AGTGGCTGCTGGCGACCGGC.............................................................................................. 20 2 3 0.33 1 0 0 0 1 0 0 0
....................................................................................................................................AAAGCGGTGAGGGCGTTT....................................................................................................................................................................... 18 2 7 0.29 2 0 0 2 0 0 0 0
...............................................................................................................................................................................................................................................TTAGTCGTATTAGTCGTTTCG......................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1
...................................................................................................................AAAGACGAAAACAGGACAAA...................................................................................................................................................................................... 20 2 7 0.14 1 0 0 0 1 0 0 0
....................................................................................................................................AAAGCGGTGAGGGCGT......................................................................................................................................................................... 16 1 8 0.13 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................CAAGCAAGATTCGTT................................. 15 1 9 0.11 1 0 0 0 0 1 0 0
...................................................................................................................AAGGACGAAAACAAGACAA....................................................................................................................................................................................... 19 2 15 0.07 1 0 0 0 1 0 0 0
.........................................GAAGTTGTTCATACACAT.................................................................................................................................................................................................................................................................. 18 2 17 0.06 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAAGCAAGACTCGGTAC............................... 17 2 20 0.05 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................CGCGTCAGTCGCTGCCCGC..................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0
.......................................................................AGACTTCGACTCAGA....................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19710218-19710534 - dsi_25890 -----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------------------------TATGTG------------AATGTGAGTCTGAATCTGA--------G------TCTC------------------------------------------AGACAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATG--AT---TGT--GG--------TTTTGTTTTTAGTGGTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGAGCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTCGTTCTAAGCCATCGACGGAGCCGGACG---CTCATCGCG-CTTTTG-------GC
droSec2 scaffold_11:30212-30536 - -----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTT-G------------CGGCTTCAACCAGTATGTG-----------------------------AATGTGAGT------------------CTGAATCTGAGTCTCTGAATCTGACTCTC------------------------------------------AGACAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATG--AT---TGT--GG--------TTTTGTTTTTAGTGCTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGAGCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTCGTTCTAAGGCATCGACGGAGCCGGACG---CTCATCGCG-CTTTTG-------GC
dm3 chr3L:20120431-20120747 - -----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATATG-----------------------------TATGTG------------AATGTGAGTCTGAATCTCA--------G------TCAC------------------------------------------AGACAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGTCAGTCCCGCACAT------GCG--ATG--AT---TGT--GG--------TTTTGTTTTTAGTGGTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGACCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC------------T-ACGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTCGTTCTAAGCCATCGACGGAGCCGGACG---CTCATCGCG-CTTTTG-------GC
droEre2 scaffold_4784:19848625-19848970 - -----CAACGAAAGTGAACAT-------CACACTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATAGG-----------TAAG------GGTATGTGTCTGTGAGT------------------CTGAGTCGGG--------G------TCTC------------------------------------------AGACAGCCGATATACAGATATATATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATT--AT---TGT--GG--------TTTTGTTTTTAGAGGTATTCCACTATTCC--ATTTCATTCTATGCGTAGTCA---CCGACGATCGCTG--------------------------------------------------------------------------------------------------------------CCCGCTGCCCGCTG-GGAC------------T-TCGTATAAAATCAGCATAATCAGAAAT-TCTAGGCAGCAGTTCGTTCTAAGCCATCGACGGAGCCGGACG---CTCATCGCG-CCTTTG-------GC
droYak3 v2_chr3L_random_222:17602-17932 + -----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------CGTGTATATGTGTATGTGTATGTGAGT------------CTGAGTCTGACTCTGA--------G------TCT----------------------------------------------CAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATT--AT---TGT--GG--------TTTTGTTTTTAGTGGTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGACCGCTG--------------------------------------------------------------------------------------------------------------TCCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCACCAGTTCGTTCTAAGCCATCGACGGAGCTTGACG---CTCATCGCG-CTTTTG-------GC
droEug1 scf7180000409711:5830324-5830646 + -----GAACGAAAGTGAACAT-------CACATTTAACGCTTCGCAGTCTG------------CGACTTCAACCGGTATGTG-------------------------------------T------------------CTGAATCCAA--------G------TCTC------------------------------------------TGACAACCGATATATC--TGTATACGAG--------------------TATATAT-------------G--TTGTACTTTTGTTCTGTTTCGCCAGTCTCGCACAT------GCG--ATT--AT---TGTGTGGTTTTG---TGTTTTTTTTAGTTTTATTC--------C--ATTTTATTCTATGCGTAGTCGTAGTCGTCGTCCGCTG--------------------------------------------------------------------------------------------------------------CCCG----CTGCTG-GGAC------------T-CCGTATAAAATCAGCATAATCGGAAAT-TCTACCCAACAGTTGGTTCTAAGCCACCGACGGAGCCGGACG---CTCATCGCGGTTTTTG-------GT
droBia1 scf7180000302193:2898613-2898898 - -----GAACGAAAGTGAAGAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCCTCAACCGGTACGAG-------------------------------------T------------------------CTCA--------G------TCTC------------------------------------------TGACAACCAATATA--------CAT----------------------------------------------TTTTACTTTTGTTCTGTTTCGCCAGTCTCGCACAT------GCG--ATT--AT---CGT--GC--------TTGTGTTTTTAGTTGTATTC--------C--ATTTCATTTTATGCGTAGTC------GTCGTACGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC--------CCACT-CCGTATAAAATCAGCATAATCGGAAAT-TCTACCCAGCAGTTGGTTCTAAGCCACCGTCGGAGCCGGACG---CCCATCGCG-CTTTCG-------GC
droTak1 scf7180000415868:70754-71071 - C----GAACGAAAGTGAAGAT-------CACATTTAACGCTTCGCAGTC-G---CTTCAGT--CGGCTTCAACCGGTATGTG-----------------------------TCTGTGAGT------------------CCGATTCCGA--------A------TCCG------------------------------------------AGACAACCAATATA--------TA------------------------------TT------------T--TCCTACTTTTGTTCTGTTTCGCCAGTCTCGCACAT------GCG--ATT--AT---TGT--GGTTTTTTGTTTTTGTTTTTAGTTGTATTC--------C--ATTTTATTCTATGCGTAGTC------GTCGTGCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC--------TCACT-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTGGTTCTAAGCCATCGTCGGAGCCGGACG---CTCATCGCG-CTTTTG-------GC
droEle1 scf7180000491193:4424044-4424219 - -----CAACGAAAGTGAACAT-------CACATTTATAGCCTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------TTTG--------------AGTCTGAGTCCGAGTCTGAGTCTGAGTCTGAGTATGA--------G------TCTC------------------------------------------TGACAGCCCATATA--------TAT-------------------------------------------T--TTGTACTTTTGTTCTGTTTCGCCAGTCTCGCATAT------GCG--ATT--AT---TGT--GG--------CTTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000770922:2686-2971 + -----GAACGAAAGTGAACAT-------CACATTTATAGCTTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------------------------TCTGAG------------ATTTTGAGTCTGAGTCTGG--------T------TCTC------------------------------------------CGTCAGCCCATATA--------TAT-------------------------------------------T--TTGTACTTTTGTTCTGTTTCGCCAGTCGCGCACAT------GCG--ATT--AT---TGT--GG--------CTTTGTTTTTAGTTGTATTC--------C--AT-TTATTCTATGCGTAGTC------GTCGACCGCCG--------------------------------------------------------------------------------------------------------------TCCG-------CCGGAGTC------------C-CAGTATAAAATCAGCATAATCGGAAAT-TCTACCTAGCAGTTGGTTCTAAGCCATCGACGAGGCCGGTCG----------------------------
droFic1 scf7180000454113:2189950-2190239 + -----GAACGAAAGTGAACAT-------CACGTTAAACGCTTCGCAGTC-G------------CGGCTTTAACCGGTATCAG-------------------------------------T----------------------------------------------C------------------------------------------TGACAGACGATATA--------TATG----------------------------TTTTTTTTTCTCATT--TTGTACTTGTGTTCTGTTTCGACAGTCGCAT--AT------GCGAGATT--AT---TGC--GG--------CTTTGTTTTTAGTTGTATTC--------C--ATTTTATTCTATGCGTAGTC------GTCATCCGACG--------------------------------------------------------------------------------------------------------------ATCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTGGTTCTAAGCCATTGACGGAGCCGGACG---CTCATCGTG-CTTTCG-------GT
droKik1 scf7180000302686:570167-570506 - -----CAATGAAAGTGAACAT-----CGCACATTAAATGCTTCGCAGTC-G------------CCGCT-------GTATGTGCGGTGCCATGCTGTG--------------CGTGTGTGC------------CCGGGTCTGGCTCTGG--------GTCTG--TCTC------------------------------------------TGACAGCCAATATA--------TTT--------------TGTTGCTGGCTTATTTT------------A--TTTCACTTTTGTTCTGTTTCGCGAGTCTCGTATAT------GCG--ATT--AT---TGT--GG--------TTTTGTTTTTAGTTGTATTCCA---TTCC--ATTTTATTCTATGCGCAGCC------GT---CCGCTG--------------------------------------------------------------------------------------------------------------CCCA-------CTG-GGAC------------TCCCGTATAAAATCAGCATAATCAGAAAT-TCTACCAAGCAGTTGGTTCTAAGCCGTTGACGGAGCCGGACGCAGCTCATCGCG-CCTCTG-------GT
droAna3 scaffold_13337:5024816-5025160 + -----GAACGAAAGTGAACATCGAATCGCACATTAAACGCTTCGCAGTC-A---CT---GTCGCGGTTTTAACCG--------------------------------------------T------------------CTGA--------------G------CC--GCCCGTTTGAGGTTTTTTTTTTCTCGTTTCATTTTTTTTTACTGACAGCCAATATA--------TTT--------------TGTTGCTGG-----T--------------TTATTTTACTTTTGTTCTGTTTCGCGAGTCTCGT--AT------GCG--ATT--AT---TGT--TG--------TTTTGTTTTTAGTAGTATTC--------C--ATTTTATTCTATGCGTAGT------------CCGCTG--------------------------------------------------------------------------------------------------------------GCCG-------CTG-GGACTTGCGGTCCCCGG-CCATATAAAATCAGCATAATCAGAAAT-TCTACCGAGCAGTTGGTTCTAAGCCATTGTCGGAGCCGGACG---CTCATCGCC-TCTCTG-------GC
droBip1 scf7180000396371:355273-355626 + -----GAACGAAAGTGAACATCGAATCGCACATTAAACGCTTCGCAGTC-AACGCT---GTCGCGGTTTTAACCG--------------------------------------------T------------------CTGA--------------G------CC--GCCCGTTTGAGGTTTTT-TTTTCTCGTTTCATTTTTTTTTACTGACAGCCAATATA--------TTT--------------TGTTGCTGG-----T--------------TTATTTTACTTTTGTTCTGTTTCGCGAGTCTCGT--AT------GCG--ATT--AT---TGT--TG--------TTTTGTTTTTAGTAGTATTC--------C--ATTTTATTCTATGCGTAGT------------CCGCTG--------------------------------------------------------------------------------------------------------------GCCG-------CTG-GGACTTGCGGTCCCCGG-CCATATAAAATCAGCATAATCAGTAAT-TCTACCGAGCAGTTGGTTCTAAGCCATTGTCGGAGCCGGACG---CTCATCGCC-TCTCTGTGGCCTGGT
dp5 XR_group6:4691463-4691701 - -----TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------TTACTTTACTTTTGTTCTTTTTCGCGTGTTTCGTA--T------GCG--ATTCGATTGTTGT--TGCTG-----TTTTGTTTTTAGTTGTATTT--------C--ATTTTATTCTATGCGTAGT------------CCGCCG---------------------------------------TCTACCGTCGGCAGACG------------------------------------------------------G---CCGTCCGTTGGGGACTTGTGGGCTCTAT-CCATATAAAATCAACATAATCGGAAAT-TCTACCAAGCAGTTGATTCTAAGCAATTGACGGAGCCGGACG---CTCACTCCG-CCTCTG-------GC
droPer2 scaffold_9:2992088-2992327 - -----TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------TTACTTTGCTTTTGTTCTTTTTCGCGTGTTTCGTA--T------GCG--ATTCGATTGTTGT--TGCTG-----TTTTGTTTTTAGTTGTATTT--------C--ATTTTATTCTATGCGTAGT------------CCGCCG---------------------------------------TCTACCGTCGGCAGACG------------------------------------------------------G---CCGTCCGTTGGGGACTTGTGGGCTCTAT-CCATATAAAATCAACATAATCGGAAATTTCTACCAAGCAGTTGATTCTAAGCAATTGACGGAGCCGGACG---CTCACTCCG-CCTCTG-------GC
droWil2 scf2_1100000004511:1277612-1277961 - TGTGTGAGTGAGTGTGAACG--GAGTC------------------AGTC-A---------------------------------------------------------------------------------------------------------ATTT------------------------------------TA---------------------TATATG--TATAAACAGACGTATGTATTATATTGT---CGTA-------------------TTTTA-TTTTGTTCTTTTC-----------------------TG--ATG--GC---TGC--TGC-------TTTTGTTTTTAGTTGTATTT--------C--ATTTTATTCTATGCGTAAA------------TCGTTATTCTGGCGACTGCGCCAATAGCACGCTGCTGCGTCGCCGTC-AGCGTCGGC-GTCGGCGGTGTCTCTGTCTGTGTCTGGGCCTGCTTTGGGGTCTGGCTCTGACTCTGGTTCTGG-CTTTGGGG-GTCT--------TCCAC-ATATATAAAATCAGCATAATCAGTTAT-TCTACCAAGCAGTTGATTCTAAGCAATTGACAAAGCCGCACA---C------------------------
droVir3 scaffold_13049:18297140-18297287 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTAGTTGTTTTC--------C--ATATTATTTTATGCGTACT------------ACGCTG--------------------------------------------------------------------------------------------------------------TCCGG-CTCTGTGG-GCTA------------T-CCATATAAAATCAACATAATCAGAAAT-TCTACCGAGCAGTTGATTCTATGCGGTCGACGAAGCCGGACG---CGCT--GCC-TTCTGG-------GG
droMoj3 scaffold_6680:19080444-19080653 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTCTTT-TTACGTGTTTCGTA--TACAGCTACG--ATC--TT---TAT--ATATGTTTTTCATTATTTTTTGTTGTATTTTA---TTTCGTATTTCGTTCTATGCGTACA------------ACGCTG--------------------------------------------------------------------------------------------------------------TCCGG-CTCCACGG-GCAA------------T-CCATATAAAATCAGCATATTCAGAAAT-TCTACCGGACAGTCGATTCTATGCGGTCAACGGAGTCGGACG---CGCTGCCTT-CTTGGG-------GC
droGri2 scaffold_15110:9346884-9347060 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTCTTT-TTACGTGTTTCGTA--TACTCGTACG--A------------------------TATTTTTTTTAGTTGTTGTC--------C--ATTTTATTCTATGCGTACT------------ACGCTG--------------------------------------------------------------------------------------------------------------TCCG-------GGG-GCTG------------T-CCATATAAAATCAACATAATCGGAAAT-TCTAGCGAGCAGTTGATTCTATGCGATCGACGAAGGCGGACG---CGCTGC----CTTCTG-------GG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
-----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------------------------TATGTG------------AATGTGAGTCTGAATCTGA--------G------TCTC------------------------------------------AGACAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATG--AT---TGT--GG--------TTTTGTTTTTAGTGGTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGAGCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTCGTTCTAAGCCATCGACGGAGCCGGACG---CTCATCGCG-CTTTTG-------GCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCG................................18118.0018171000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGAC.............................19115.001590600000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-GGAC------------T-CCGTATAAAATCAG....................................................................................2113.00300000201000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-GGAC------------T-CCGTATAAAATCAGT...................................................................................2212.00200000020000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACG---CTC......................2512.00210100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACG---CT.......................2412.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-GGAC------------T-CCGTATAAAATCAGC...................................................................................2212.00200000011000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGCGTAGTCA---CCGACGA.......................................................................................................................................................................................................................................................2312.00200000011000000000
......................................GCTTCGCAGTC-G------------CGGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACG---C........................2312.00220000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---CTCA.....................2412.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGA..............................2012.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACG---CTCATC...................2812.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGG..............................2012.00220000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---CTC......................2311.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---C........................2111.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---CTCAT....................2511.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATCGACGGAGCCGGAC.............................2011.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................TGT--GG--------TTTTGTTTTTAGTG.......................................................................................................................................................................................................................................................................................................1911.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GGAC------------T-CCGTATAAAATCAGC...................................................................................2311.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCGACGGAGCCGGACG---C........................2011.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCATCGACGGAGCC.................................1811.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGAC.............................2111.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACG---CTCA.....................2611.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCGACGGAGCCGGACG---.........................1911.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................AT---TGT--GG--------TTTTGTTTTT...........................................................................................................................................................................................................................................................................................................1720.50100000000001000000
droSec2
-----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTT-G------------CGGCTTCAACCAGTATGTG-----------------------------AATGTGAGT------------------CTGAATCTGAGTCTCTGAATCTGACTCTC------------------------------------------AGACAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATG--AT---TGT--GG--------TTTTGTTTTTAGTGCTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGAGCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTCGTTCTAAGGCATCGACGGAGCCGGACG---CTCATCGCG-CTTTTG-------GCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGGAGCCGGACG---CT.......................1911.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-GGAC------------T-CCGTATAAAATCAGC...................................................................................2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGGAGCCGGACG---C........................1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGTTCTAAGGC.............................................1811.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GGAC------------T-CCGTATAAAATCAGCA..................................................................................2411.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGCCGGACG---CTCATCGCG-CTTT...........2611.0010100
dm3
-----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATATG-----------------------------TATGTG------------AATGTGAGTCTGAATCTCA--------G------TCAC------------------------------------------AGACAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGTCAGTCCCGCACAT------GCG--ATG--AT---TGT--GG--------TTTTGTTTTTAGTGGTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGACCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC------------T-ACGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTCGTTCTAAGCCATCGACGGAGCCGGACG---CTCATCGCG-CTTTTG-------GCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGA..............................18112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000001000000000000000010000000000000000000000102000200000000210000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGA..............................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCG................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100200000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGGAGCCGGACG---C........................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010200000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATCGACGGAGCCGGA..............................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---C........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---CTCA.....................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................AT------GCG--ATG--AT---TGT--GG--------TTTTG................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---CTCAT....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGAC.............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAGCCATCGACGGAGC..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAGCCATCGACGGAGCCG................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGTTCTAAGCCAT...........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GGAC------------T-ACGTATAAAATCAGCATC................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GGAC------------T-ACGTATAAAATCAGC...................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCTAAGCCATCGACGGAGCC.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGGAGCCGGACG---CTCA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCGACGGAGCCGGACG---CTCAT....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-GGAC------------T-ACGTATAAAATCA.....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---CTCATCG..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCCGGACG---CTCATC...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATCGACGGAGCCGGACG---.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGGAGCCGGACG---CT.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGTTCTAAGCCATCGACG......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------CTG-GGAC------------T-ACGTATAAAAT.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AACAT-------CACATTTAGCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AT------GCG--ATG--AT---TGT--GG--------TTT..................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GGAC------------T-ACGTATAAAATCAG....................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGTTCTAAGCCATC..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATCGACGGAGCCGGACG---C........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------CTG-GGAC------------T-ACGTATGG..........................................................................................1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
-----CAACGAAAGTGAACAT-------CACACTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATAGG-----------TAAG------GGTATGTGTCTGTGAGT------------------CTGAGTCGGG--------G------TCTC------------------------------------------AGACAGCCGATATACAGATATATATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATT--AT---TGT--GG--------TTTTGTTTTTAGAGGTATTCCACTATTCC--ATTTCATTCTATGCGTAGTCA---CCGACGATCGCTG--------------------------------------------------------------------------------------------------------------CCCGCTGCCCGCTG-GGAC------------T-TCGTATAAAATCAGCATAATCAGAAAT-TCTAGGCAGCAGTTCGTTCTAAGCCATCGACGGAGCCGGACG---CTCATCGCG-CCTTTG-------GCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGGAGCCGGACG---C........................1811.0010000100
droYak3
-----CAACGAAAGTGAACAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------CGTGTATATGTGTATGTGTATGTGAGT------------CTGAGTCTGACTCTGA--------G------TCT----------------------------------------------CAGCCGATATA--------TATGGC--------------------CATATATT------------T--TTCTACTTTTGTTCTGTTTCGCCAGTCCCGCACAT------GCG--ATT--AT---TGT--GG--------TTTTGTTTTTAGTGGTATTC--------C--ATTTTATTCTATGCGTAGTCA---CCGACGACCGCTG--------------------------------------------------------------------------------------------------------------TCCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCACCAGTTCGTTCTAAGCCATCGACGGAGCTTGACG---CTCATCGCG-CTTTTG-------GCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCTTGACG---CTC......................2320.50100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCGACGGAGCTTGAC.............................1920.50100100000000
droEug1
-----GAACGAAAGTGAACAT-------CACATTTAACGCTTCGCAGTCTG------------CGACTTCAACCGGTATGTG-------------------------------------T------------------CTGAATCCAA--------G------TCTC------------------------------------------TGACAACCGATATATC--TGTATACGAG--------------------TATATAT-------------G--TTGTACTTTTGTTCTGTTTCGCCAGTCTCGCACAT------GCG--ATT--AT---TGTGTGGTTTTG---TGTTTTTTTTAGTTTTATTC--------C--ATTTTATTCTATGCGTAGTCGTAGTCGTCGTCCGCTG--------------------------------------------------------------------------------------------------------------CCCG----CTGCTG-GGAC------------T-CCGTATAAAATCAGCATAATCGGAAAT-TCTACCCAACAGTTGGTTCTAAGCCACCGACGGAGCCGGACG---CTCATCGCGGTTTTTG-------GTSizeHit CountTotal NormTotal
No Reads
droBia1
-----GAACGAAAGTGAAGAT-------CACATTTAGCGCTTCGCAGTC-G------------CGGCCTCAACCGGTACGAG-------------------------------------T------------------------CTCA--------G------TCTC------------------------------------------TGACAACCAATATA--------CAT----------------------------------------------TTTTACTTTTGTTCTGTTTCGCCAGTCTCGCACAT------GCG--ATT--AT---CGT--GC--------TTGTGTTTTTAGTTGTATTC--------C--ATTTCATTTTATGCGTAGTC------GTCGTACGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC--------CCACT-CCGTATAAAATCAGCATAATCGGAAAT-TCTACCCAGCAGTTGGTTCTAAGCCACCGTCGGAGCCGGACG---CCCATCGCG-CTTTCG-------GCSizeHit CountTotal NormTotal
No Reads
droTak1
C----GAACGAAAGTGAAGAT-------CACATTTAACGCTTCGCAGTC-G---CTTCAGT--CGGCTTCAACCGGTATGTG-----------------------------TCTGTGAGT------------------CCGATTCCGA--------A------TCCG------------------------------------------AGACAACCAATATA--------TA------------------------------TT------------T--TCCTACTTTTGTTCTGTTTCGCCAGTCTCGCACAT------GCG--ATT--AT---TGT--GGTTTTTTGTTTTTGTTTTTAGTTGTATTC--------C--ATTTTATTCTATGCGTAGTC------GTCGTGCGCTG--------------------------------------------------------------------------------------------------------------CCCG-------CTG-GGAC--------TCACT-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTGGTTCTAAGCCATCGTCGGAGCCGGACG---CTCATCGCG-CTTTTG-------GCSizeHit CountTotal NormTotal
No Reads
droEle1
-----CAACGAAAGTGAACAT-------CACATTTATAGCCTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------TTTG--------------AGTCTGAGTCCGAGTCTGAGTCTGAGTCTGAGTATGA--------G------TCTC------------------------------------------TGACAGCCCATATA--------TAT-------------------------------------------T--TTGTACTTTTGTTCTGTTTCGCCAGTCTCGCATAT------GCG--ATT--AT---TGT--GG--------CTTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-----GAACGAAAGTGAACAT-------CACATTTATAGCTTCGCAGTC-G------------CGGCTTCAACCGGTATGTG-----------------------------TCTGAG------------ATTTTGAGTCTGAGTCTGG--------T------TCTC------------------------------------------CGTCAGCCCATATA--------TAT-------------------------------------------T--TTGTACTTTTGTTCTGTTTCGCCAGTCGCGCACAT------GCG--ATT--AT---TGT--GG--------CTTTGTTTTTAGTTGTATTC--------C--AT-TTATTCTATGCGTAGTC------GTCGACCGCCG--------------------------------------------------------------------------------------------------------------TCCG-------CCGGAGTC------------C-CAGTATAAAATCAGCATAATCGGAAAT-TCTACCTAGCAGTTGGTTCTAAGCCATCGACGAGGCCGGTCG----------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-----GAACGAAAGTGAACAT-------CACGTTAAACGCTTCGCAGTC-G------------CGGCTTTAACCGGTATCAG-------------------------------------T----------------------------------------------C------------------------------------------TGACAGACGATATA--------TATG----------------------------TTTTTTTTTCTCATT--TTGTACTTGTGTTCTGTTTCGACAGTCGCAT--AT------GCGAGATT--AT---TGC--GG--------CTTTGTTTTTAGTTGTATTC--------C--ATTTTATTCTATGCGTAGTC------GTCATCCGACG--------------------------------------------------------------------------------------------------------------ATCG-------CTG-GGAC------------T-CCGTATAAAATCAGCATAATCAGAAAT-TCTACCCAGCAGTTGGTTCTAAGCCATTGACGGAGCCGGACG---CTCATCGTG-CTTTCG-------GTSizeHit CountTotal NormTotal
No Reads
droKik1
-----CAATGAAAGTGAACAT-----CGCACATTAAATGCTTCGCAGTC-G------------CCGCT-------GTATGTGCGGTGCCATGCTGTG--------------CGTGTGTGC------------CCGGGTCTGGCTCTGG--------GTCTG--TCTC------------------------------------------TGACAGCCAATATA--------TTT--------------TGTTGCTGGCTTATTTT------------A--TTTCACTTTTGTTCTGTTTCGCGAGTCTCGTATAT------GCG--ATT--AT---TGT--GG--------TTTTGTTTTTAGTTGTATTCCA---TTCC--ATTTTATTCTATGCGCAGCC------GT---CCGCTG--------------------------------------------------------------------------------------------------------------CCCA-------CTG-GGAC------------TCCCGTATAAAATCAGCATAATCAGAAAT-TCTACCAAGCAGTTGGTTCTAAGCCGTTGACGGAGCCGGACGCAGCTCATCGCG-CCTCTG-------GTSizeHit CountTotal NormTotal
No Reads
droAna3
-----GAACGAAAGTGAACATCGAATCGCACATTAAACGCTTCGCAGTC-A---CT---GTCGCGGTTTTAACCG--------------------------------------------T------------------CTGA--------------G------CC--GCCCGTTTGAGGTTTTTTTTTTCTCGTTTCATTTTTTTTTACTGACAGCCAATATA--------TTT--------------TGTTGCTGG-----T--------------TTATTTTACTTTTGTTCTGTTTCGCGAGTCTCGT--AT------GCG--ATT--AT---TGT--TG--------TTTTGTTTTTAGTAGTATTC--------C--ATTTTATTCTATGCGTAGT------------CCGCTG--------------------------------------------------------------------------------------------------------------GCCG-------CTG-GGACTTGCGGTCCCCGG-CCATATAAAATCAGCATAATCAGAAAT-TCTACCGAGCAGTTGGTTCTAAGCCATTGTCGGAGCCGGACG---CTCATCGCC-TCTCTG-------GCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGCCATTGTCGGAGCCGGACG---CT.......................2611.001000010
droBip1
-----GAACGAAAGTGAACATCGAATCGCACATTAAACGCTTCGCAGTC-AACGCT---GTCGCGGTTTTAACCG--------------------------------------------T------------------CTGA--------------G------CC--GCCCGTTTGAGGTTTTT-TTTTCTCGTTTCATTTTTTTTTACTGACAGCCAATATA--------TTT--------------TGTTGCTGG-----T--------------TTATTTTACTTTTGTTCTGTTTCGCGAGTCTCGT--AT------GCG--ATT--AT---TGT--TG--------TTTTGTTTTTAGTAGTATTC--------C--ATTTTATTCTATGCGTAGT------------CCGCTG--------------------------------------------------------------------------------------------------------------GCCG-------CTG-GGACTTGCGGTCCCCGG-CCATATAAAATCAGCATAATCAGTAAT-TCTACCGAGCAGTTGGTTCTAAGCCATTGTCGGAGCCGGACG---CTCATCGCC-TCTCTGTGGCCTGGTSizeHit CountTotal NormTotal
No Reads
dp5
-----TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------TTACTTTACTTTTGTTCTTTTTCGCGTGTTTCGTA--T------GCG--ATTCGATTGTTGT--TGCTG-----TTTTGTTTTTAGTTGTATTT--------C--ATTTTATTCTATGCGTAGT------------CCGCCG---------------------------------------TCTACCGTCGGCAGACG------------------------------------------------------G---CCGTCCGTTGGGGACTTGTGGGCTCTAT-CCATATAAAATCAACATAATCGGAAAT-TCTACCAAGCAGTTGATTCTAAGCAATTGACGGAGCCGGACG---CTCACTCCG-CCTCTG-------GCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGGAGCCGGACG---CT.......................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATTGACGGAGCCGGA..............................2011.0010100000000
droPer2
-----TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------TTACTTTGCTTTTGTTCTTTTTCGCGTGTTTCGTA--T------GCG--ATTCGATTGTTGT--TGCTG-----TTTTGTTTTTAGTTGTATTT--------C--ATTTTATTCTATGCGTAGT------------CCGCCG---------------------------------------TCTACCGTCGGCAGACG------------------------------------------------------G---CCGTCCGTTGGGGACTTGTGGGCTCTAT-CCATATAAAATCAACATAATCGGAAATTTCTACCAAGCAGTTGATTCTAAGCAATTGACGGAGCCGGACG---CTCACTCCG-CCTCTG-------GCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGGAGCCGGACG---CT.......................1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGGAGCCGGACG---CTCA.....................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGCAATTGACGGAGC..................................1811.001100000
droWil2
TGTGTGAGTGAGTGTGAACG--GAGTC------------------AGTC-A---------------------------------------------------------------------------------------------------------ATTT------------------------------------TA---------------------TATATG--TATAAACAGACGTATGTATTATATTGT---CGTA-------------------TTTTA-TTTTGTTCTTTTC-----------------------TG--ATG--GC---TGC--TGC-------TTTTGTTTTTAGTTGTATTT--------C--ATTTTATTCTATGCGTAAA------------TCGTTATTCTGGCGACTGCGCCAATAGCACGCTGCTGCGTCGCCGTC-AGCGTCGGC-GTCGGCGGTGTCTCTGTCTGTGTCTGGGCCTGCTTTGGGGTCTGGCTCTGACTCTGGTTCTGG-CTTTGGGG-GTCT--------TCCAC-ATATATAAAATCAGCATAATCAGTTAT-TCTACCAAGCAGTTGATTCTAAGCAATTGACAAAGCCGCACA---C------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTAGTTGTTTTC--------C--ATATTATTTTATGCGTACT------------ACGCTG--------------------------------------------------------------------------------------------------------------TCCGG-CTCTGTGG-GCTA------------T-CCATATAAAATCAACATAATCAGAAAT-TCTACCGAGCAGTTGATTCTATGCGGTCGACGAAGCCGGACG---CGCT--GCC-TTCTGG-------GGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGATTCTATGCGGTCGA........................................2011.001000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCGACGAAGCCGGACG---C........................2011.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGTCGACGAAGCCGGACG---.........................2211.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTCTTT-TTACGTGTTTCGTA--TACAGCTACG--ATC--TT---TAT--ATATGTTTTTCATTATTTTTTGTTGTATTTTA---TTTCGTATTTCGTTCTATGCGTACA------------ACGCTG--------------------------------------------------------------------------------------------------------------TCCGG-CTCCACGG-GCAA------------T-CCATATAAAATCAGCATATTCAGAAAT-TCTACCGGACAGTCGATTCTATGCGGTCAACGGAGTCGGACG---CGCTGCCTT-CTTGGG-------GCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTCTTT-TTACGTGTTTCGTA--TACTCGTACG--A------------------------TATTTTTTTTAGTTGTTGTC--------C--ATTTTATTCTATGCGTACT------------ACGCTG--------------------------------------------------------------------------------------------------------------TCCG-------GGG-GCTG------------T-CCATATAAAATCAACATAATCGGAAAT-TCTAGCGAGCAGTTGATTCTATGCGATCGACGAAGGCGGACG---CGCTGC----CTTCTG-------GGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:54 PM