ID:

dsi_25884

 Coordinate:

3l:11480218-11480367 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.6 -32.6 -32.6

Flybase annnotation

exon [3l_11479504_11480217_-]; CDS [3l_11479504_11480217_-]; intron [3l_11480218_11482168_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGGTGCTAGTCCAACCGATCCACATCGCACCGCTGCGACTTTAGGGGCCGTCTCATTTATTTTTGGCCACACGATGTGATGTGCCCGGATTCTCGCAGTAGTAGGCCTCGGCTCTCGAGCATATTTGCATAACTACTGGCGATATTCTCGTTGGGAACTGGATTTAACCCGGAACTGATCATGCACTCACTACTTGCAGGCAACGACACCGCCTCCGACAGCACTTCCTACTATGCGGAATACGATCCC
**************************************************......................(((.((((.((((...((((.((((((((((.(((....))).....(((....)))...)))))).))))..(((((...)))))((((.......))))....))))..))))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................CGCTGCGACTTTAGGGGC......................................................................................................................................................................................................... 18 0 1 10.00 10 9 1 0 0 0 0
....................................................................................CCCGGATTCTCGCAGTAGTAG................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
...............................CGCTGCGACTTTGGGGGC......................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................TACTGGCAACGACACCGCCTCCGACCG............................ 27 3 1 1.00 1 0 0 0 1 0 0
........................ATCGCACCGCTGCGACTTTAGGGGC......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................TGAATTTAACCCGGA............................................................................ 15 1 9 0.11 1 0 0 0 0 1 0
...........................................................................TGTGATGTGCTCGGA................................................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 0 1

Anti-sense strand reads

CACCACGATCAGGTTGGCTAGGTGTAGCGTGGCGACGCTGAAATCCCCGGCAGAGTAAATAAAAACCGGTGTGCTACACTACACGGGCCTAAGAGCGTCATCATCCGGAGCCGAGAGCTCGTATAAACGTATTGATGACCGCTATAAGAGCAACCCTTGACCTAAATTGGGCCTTGACTAGTACGTGAGTGATGAACGTCCGTTGCTGTGGCGGAGGCTGTCGTGAAGGATGATACGCCTTATGCTAGGG
**************************************************......................(((.((((.((((...((((.((((((((((.(((....))).....(((....)))...)))))).))))..(((((...)))))((((.......))))....))))..))))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
....................................................................................................................................................................TATTGGGCCTTGACTAGTACG................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
.........................................AATCCCCGGCTGAGT.................................................................................................................................................................................................. 15 1 3 1.33 4 0 1 1 0 1 1 0
...................................................................................................................................................................................................................TGGAGGCTGTCGTGAAGGAT................... 20 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................ATATTGGGCCTTTACTAGTAGGT................................................................ 23 3 2 0.50 1 0 0 0 1 0 0 0
..................................................................................ACGGGCCTAAGAGTGTCAT..................................................................................................................................................... 19 1 5 0.20 1 0 0 1 0 0 0 0
..........................................ATCCCCGGCTGAGTGA................................................................................................................................................................................................ 16 2 12 0.17 2 0 2 0 0 0 0 0
.............TTGGCAAGGTGTAGGCTGGC......................................................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0
......................................................................................................................................................................TTGGGCCTTGGCTAG..................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0
..................................................................................ACGGACCTATGAGCGGCAT..................................................................................................................................................... 19 3 10 0.10 1 0 0 0 1 0 0 0
..............TCGCTAGATGTAGTGTGGC......................................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0
...................................................................GGTGTCCTACACTAC........................................................................................................................................................................ 15 1 14 0.07 1 0 0 1 0 0 0 0
.....................................CTGAAATCGACGGCGGAGTA................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 1
.....................................................................................................................................................................AGTGGGTCTTGACTAGAAC.................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0
.............................................................................................................................................................................CTGACCAGTACGAGAGTG........................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:14 AM