ID:

dsi_25861

 Coordinate:

3l:7212618-7212767 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.8 -12.8 -12.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

GATGGATAACAAAACCAACAGCAGCCTTACAGAAAATTGTTAAGCCAAAAGTAAATTGATATAAGCCAAGCTTATCGTTGAGCTAGCAAAGAGCCATAGTACAGCTTTCCAAGAATTTGTTTTTTTTTACTTTTACTTTTACATTTTACTTTATACTTTTAATCTTAATTTTGCTTTAAAGTTACGTAGTTAGTTAGCTCGTTTAGTTTCACCAGTTTTAGTTTCGCCCAACAATGGGAAGCGGGGGTGG
**************************************************************..((..((((((....)))))).)).(((((....((((........(((....)))........))))....))))).......(((...(((...((((.((((.......)))).)))).)))...))).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
..............................................................AAGCCAAGCTTATCGTTGAGC....................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................GTTACGTAGTTAGTTAGCTCGTT............................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTGCTTTAAAGTTACGTAGTTAGTT....................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................TAGTACAGCTTTCCAAGAATTTGTTT................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAGTTTCACCAGTTTTAGTTTCGCCCAA................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................TTGATATAAGCCAAGCTTATCGTTGAGC....................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................AGCCAAGCTTATCGTTGAG........................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................TAAGCCAAAAGTAAATTGATATAAGC........................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TAGCTCGTTTAGTTTC........................................ 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGCCCAACAATGGGAAGCGGGGGTG. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ACCAGTTTTAGTTTCGCCCAA................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................TATCGTTGAGCTAGCAAAGAGCCA.......................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTTCGCCCAACAATGGGAA.......... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CGTAGTTAGTTAGCTCGTTT.............................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...................................................TAAATTGATATAAGCCAAGCTTATCGT............................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCACCAGTTTTAGTTTCGCCCAACAA................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TTCACCAGTTCTAGTTTCGCCCAACGA................ 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TTGCTTTAAAGTTACGTAGTTAGT........................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TCGTTTAGTTTCACCAGTT................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................GAGCTAGCAAAGAGCCATAGTACAGC................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CCCAACAATGGGAAGCGGGGG... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................TAGTTAGTTAGCTCGTTTAGTTTCACC..................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................AGCTAGCAAAGAGCCATAGTACAGC................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................ATATAAGCCAAGCTTATCGTTGAGC....................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................TATAAGCCAAGCTTATCGTTGAGC....................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................TTATAAGCCAAGCTTATCGTTGAGC....................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................TTAGTTAGCTCGTTTAGTTTC........................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................GAGCCATAGTACAGCTTTCCAAGAA....................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................AGCTCGTTGAGTTTCTCCAGA.................................. 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TTTATTTTTTTTTAATTTTCCTTTTA............................................................................................................. 26 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................GGCCAAAAATGGGAAGCAGG..... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CTACCTATTGTTTTGGTTGTCGTCGGAATGTCTTTTAACAATTCGGTTTTCATTTAACTATATTCGGTTCGAATAGCAACTCGATCGTTTCTCGGTATCATGTCGAAAGGTTCTTAAACAAAAAAAAATGAAAATGAAAATGTAAAATGAAATATGAAAATTAGAATTAAAACGAAATTTCAATGCATCAATCAATCGAGCAAATCAAAGTGGTCAAAATCAAAGCGGGTTGTTACCCTTCGCCCCCACC
*******************************************************..((..((((((....)))))).)).(((((....((((........(((....)))........))))....))))).......(((...(((...((((.((((.......)))).)))).)))...))).************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body
.................................................................................................TCATGTCGAAAGGTTCTTA...................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTGGTCAAGATCGAAGCGGGTT................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................GCGGGTTGTTACCCTTCGCC...... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
.............TGGTTGTCGTCGGAATGTCTT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TGGTCAAGATCAAAGCGGGTT................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
..........................................TCGGTTTTCATTTAACTATAT........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................TGTCGCTAGGTTCTTAAA.................................................................................................................................... 18 2 7 0.43 3 0 0 0 0 0 3 0 0
........................................................................................................................................AAAATGTGAACTGAAATATGAAACTTA....................................................................................... 27 3 3 0.33 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TGGTCAAAATCGAAGCAGGC.................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0
.................................................................................................TCATATCGCAAGCTTCTTAA..................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0
..................TTCGTCGGAATGTCT......................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................TCAAAGTGGTCAAAGTCG............................ 18 2 11 0.09 1 0 0 0 0 0 0 0 1
...........................ATGTCTTTGAACAATGCTG............................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................CGAAAGGTTCTTAGAAA.................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................................................................TTAGAATTAAAGCGAA.......................................................................... 16 1 20 0.05 1 0 0 0 1 0 0 0 0

Generated: 04/23/2015 at 09:51 PM