ID:

dsi_25853

 Coordinate:

x:20691945-20692157 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.5 -21.5 -21.0 -21.0

Flybase annnotation

CDS [x_20690431_20692677_-]; exon [x_20689556_20692715_-]

No Repeatable elements found

Sense Strand Reads

#########################################################################################################################################################################################################################################################################################################################
TGCACCACTGAAATTCAATATTTTTGAGAAGAAATTCGCCACGGGCACGGGTGAGCCCGAGGAGCTGCCACTGCCGCCGGACATATTCTTCCATCAGGCCGTCCTGACAGCAGAGGGCACGGGTGAGCCCGAGGAGCTGCCACTGCCGCCGGACATGGCTGCTGCAACATATGTCAAAAACATCAGTAGCACAGCAGAAACATCAACTAGCACCACGCCCACGTCAACGGCGACTGTTGCCCTACCGTTTGTTCCTTCGGGAGAGGCCAGTAACCGCATTCCCGGCGGCGATTTGCTGGCGGCCCCCAGTGAT
*********************************************************************************************************************************************...(((....((..((((((((((.((..((((.....))))..)).)))..)))).....................)))..))...)))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
...........................................................................................................................................................................................................CAACTAGCACCACGCCCACGTCAACGGC.................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................AAAACATCAGTAGCACAGCAGAAACAT.............................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0
.............................................................................................................................................ACTGCCGCCGGACATGGCTG........................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................................................................ACATCAGTAGCACAGCAGAAACATCAAC.......................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
..................TATTTTTGAGAAGAAATTCTCCACGG............................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 1 0 0
..........AAGTTTAATTTTTTTGAGAAGA......................................................................................................................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................AACGGCGATTATTGCACTA..................................................................... 19 3 15 0.07 1 0 0 0 0 0 1
..................................................................................................................................................................TGTAACATGTGTCAAAAA..................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ACGTGGTGACTTTAAGTTATAAAAACTCTTCTTTAAGCGGTGCCCGTGCCCACTCGGGCTCCTCGACGGTGACGGCGGCCTGTATAAGAAGGTAGTCCGGCAGGACTGTCGTCTCCCGTGCCCACTCGGGCTCCTCGACGGTGACGGCGGCCTGTACCGACGACGTTGTATACAGTTTTTGTAGTCATCGTGTCGTCTTTGTAGTTGATCGTGGTGCGGGTGCAGTTGCCGCTGACAACGGGATGGCAAACAAGGAAGCCCTCTCCGGTCATTGGCGTAAGGGCCGCCGCTAAACGACCGCCGGGGGTCACTA
**********************************************************************************...(((....((..((((((((((.((..((((.....))))..)).)))..)))).....................)))..))...)))********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M053
female body
 GSM343915
embryo
 M025
embryo
............................................................................................................................CTCGGGCTGCTCGATGGTC.......................................................................................................................................................................... 19 3 19 9.47 180 127 0 46 0 3 0 0 0 3 0 1
....................................................CTCGGGCTGCTCGATGGTC.................................................................................................................................................................................................................................................. 19 3 19 9.47 180 127 0 46 0 3 0 0 0 3 0 1
....................................................CTCGGGCTGCTCGATGGT................................................................................................................................................................................................................................................... 18 2 2 2.50 5 1 1 0 1 1 0 1 0 0 0 0
............................................................................................................................CTCGGGCTGCTCGATGGT........................................................................................................................................................................... 18 2 2 2.50 5 1 1 0 1 1 0 1 0 0 0 0
.....................................................TCGGGCTGCTCGATGGT................................................................................................................................................................................................................................................... 17 2 12 1.67 20 0 1 0 1 8 10 0 0 0 0 0
.............................................................................................................................TCGGGCTGCTCGATGGT........................................................................................................................................................................... 17 2 12 1.67 20 0 1 0 1 8 10 0 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGATGGTC.......................................................................................................................................................................... 20 3 4 1.25 5 3 0 1 0 0 1 0 0 0 0 0
...................................................ACTCGGGCTGCTCGATGGTC.................................................................................................................................................................................................................................................. 20 3 4 1.25 5 3 0 1 0 0 1 0 0 0 0 0
...................................................ACTCGGGCTGCTCGATGGT................................................................................................................................................................................................................................................... 19 2 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0
............................................................................................TAGTACGGCAGGACTG............................................................................................................................................................................................................. 16 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGATGGT........................................................................................................................................................................... 19 2 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0
...................................................ACTCGGGCTGCTCGACGGTC.................................................................................................................................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGACGGTC.......................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GCCGCTGACAACGGGA...................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
...................................................ACTCGGGCTGCTCGACGG.................................................................................................................................................................................................................................................... 18 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................ACCACCGGGGGTCACT. 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGACGG............................................................................................................................................................................ 18 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................CTCGGGCTGCTCGATGG............................................................................................................................................................................ 17 2 11 0.27 3 0 2 0 1 0 0 0 0 0 0 0
....................................................CTCGGGCTGCTCGATGG.................................................................................................................................................................................................................................................... 17 2 11 0.27 3 0 2 0 1 0 0 0 0 0 0 0
...................................................ACTCGGGCTGCTCGATGG.................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGATGG............................................................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TAGTATAGAGTTTTAGTAGTC............................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................TCGGGCTGCTCGACGG............................................................................................................................................................................ 16 1 11 0.18 2 0 1 0 0 1 0 0 0 0 0 0
.....................................................TCGGGCTGCTCGACGG.................................................................................................................................................................................................................................................... 16 1 11 0.18 2 0 1 0 0 1 0 0 0 0 0 0
...................................................ACTCGGGCTGCTCGATG..................................................................................................................................................................................................................................................... 17 2 12 0.17 2 0 1 0 1 0 0 0 0 0 0 0
...................................GGCGATGCCCCTGCCCACT................................................................................................................................................................................................................................................................... 19 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGATG............................................................................................................................................................................. 17 2 12 0.17 2 0 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GTCTACAGTTTTTGAAGTTAT............................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
..................................................TACTCGGGCTGCTCGACGG.................................................................................................................................................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................TACTCGGGCTGCTCGACGG............................................................................................................................................................................ 19 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................CGGGCTGCTCGATGGT........................................................................................................................................................................... 16 2 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
......................................................CGGGCTGCTCGATGGT................................................................................................................................................................................................................................................... 16 2 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCTATACCGGCGACGTTG................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
...................................................ACTCGGGCTTCTCGATGGTC.................................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................ACTCGGGCTTCTCGATGGTC.......................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GGATGGCAAAGAAGG.......................................................... 15 1 15 0.13 2 0 1 0 0 0 1 0 0 0 0 0
......................................................CGGGCTGCTCGACGGT................................................................................................................................................................................................................................................... 16 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGGGCTGCTCGACGGT........................................................................................................................................................................... 16 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...................................................ACTCGGGCTGCTCGAAGGTC.................................................................................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGAAGGTC.......................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................AGGGCAAACAAGGAA........................................................ 15 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TGATGGTGGTCCGGGTGC.......................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
...................................................ACGCGGGCTGCTCGACGG.................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................ACGCGGGCTGCTCGACGG............................................................................................................................................................................ 18 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0
.....GTGACTGTTAGTTATTAAAAC............................................................................................................................................................................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................GGTAGTCTGACAGGACT.............................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TAGTCATCGTGTCGGGT................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................GGATGGCAAAGAAGGGA........................................................ 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................TCGGGCTGCTCGACG............................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................ACTCGGGCTGCTCGAT.............................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................GGCTGCTCGATGGTGACGA...................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...................................................ACTCGGGCTGCTCGAT...................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................GTGCCCGCTCGGGCTG.................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................GGCTGCTCGATGGTGACGA.............................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.............................................GTGCCCGCTCGGGCTG............................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................TCGGGCTGCTCGACG..................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:20691895-20692207 - dsi_25853 TGCACCACTGAAATTCAATATTTTTGAGAAGAAATTCGCCACGGGCACGGGTGAG------------------------C---CCGAGGAGCTGCCACTGCCGCCGGACATATTCTTCCATCAGGCCGTCCTGACAGCAGAGGGCACGGGTGAGCCCGAGG------AGCTG-----------------CCACTGCCGCCGGACATG---------------------------GCTGCTGCAACATATGTCAAAAACATCAG------T------------AGCA----------------------CAGCAGAAACATCAACTAGCACCA------CGCCCACG---------TCAACGGCGACTGTTGCCCTACCGTTTGTTCC------TTCG------------------GGA------GAGGCCAGTAACCGCATTCCCGGCGG------CGA---TTTGCTGGCGGCCCCCAGTGAT
droSec2 scaffold_39:183887-184127 - TGCACCACTGAAATTCAATATTTTTGAGAAGAAATTCGCGACGGGCACGGGTGAG------------------------C---CTG------------------------------------------------------------------------AGG------AGCTG-----------------TCACTGCCGCCGGTCATG---------------------------GCTGCTGCAACATATGTCAAAAACATCAG------T------------AGCA----------------------CAGCAGAAACATCAACTAGCACCA------CGCCCACG---------TCAACGGCGACTGTTGCCCTACCGTTTGTTCC------TTCG------------------GGA------GACGCCAGTAACCGCATTCCCGGCGG------CGA---TTTGCTGGCGGCCCCCAGTGAT
dm3 chrX:22230362-22230605 - TGCACCACTGAAATTTAATATTTTTGAGAAGAAATTCCCCACGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------CCACTACCGCCGGACATG---------------------------GCGGCTGCAACATATGCCAAAAACATCAG------T------------ACCA----------------------CACCAGAAACATCAACTAGCATCA------CGCCCACG---------TCAACGACGACTTTTGCCGTACCGTCTGTTCC------TTCG------------------GGA------GAGGCCAGTAACCGCATTCCCGGCGGCG---TCGA---TTTGCTGGCGGCCCCCAGTGAT
droEre2 scaffold_4690:18514695-18514935 - CGCACCACTGAAGTTCAACATTTTTGAGAAGAAGTTCCCCACGGGCACGGGTGAG------------------------T---CCG------------------------------------------------------------------------AGG------AGCTG-----------------CCCCTGCCGCCGGACACG---------------------------GTGGCTGCAACATATGCCCAAAACATCAG------T------------ACCA----------------------CAGCAGAAACACTAACTAGCACAG------CGCCCACG---------TCAACGACGCCTGTTGCCATACCGGCTGTGCC------TTCG------------------GGA------GAGGCCAGTAACCGCATTTCCGGCGG------CGA---CTTGCTGGCGGCCCCCAGTGAT
droYak3 X:21594673-21594913 - TGCACCACTGAAATTTAACATTTTTGAGAAGAAATTCCCCACGGGCACGGGAGAG------------------------T---CCG------------------------------------------------------------------------AGG------AGGTG-----------------CCACTGCCGCCGGACATG---------------------------GTGGCTGCAACATATGCCAAAAACATCAG------T------------ACCA----------------------CAGCAGAAACAACAACTAGCACAG------CGCCCACG---------TCAACGGCGACTGTTGCCACACCGGCAGTTCC------TTCG------------------GGA------GAGCTCAGTAAGCGCACTTCCGGAGG------CGA---TTTGATGGCGGCCCCCAGTGAT
droEug1 scf7180000408987:250543-250765 + TGCACCACTGAAATTCAATATATTCCAGAAGAAATTCCCCACAGGTTCGGGTGAG------------------------C---CCG------------------------------------------------------------------------AGG------TTCAG-----------------GCGCTACCGCAGGACATG---------------------------GTGGGTGCCTCAAATGCCGGCAACAGCAG------C------------ACCA----------------------CAG---CGACGTCCACTACCACAG------CAGGAACA---------TCAGCGTCGAACACGACGACACCAGCTACTCC------TCCT------------------TAT------AAG---------------CCCAACGG------GGA---CTTGCAGGCAGCCCCCAGTAAT
droBia1 scf7180000302255:261622-261862 - TGCACCGCTGAAATTCAATATTTTCGAGAAGAAATTCCCCACGGGCACGGGCGAG------------------------C---CCG------------------------------------------------------------------------AGG------AGCCG-----------------CCAATGCCGCCGGACGTG---------------------------TTGGCATCAATATCTGCCGGCAACAGCAG------T------------TTCA----------------------CAGCAGCAACGTCAGCCAGCACAG------CGGCGACG---------TCAACGACGACTGTGAGCACACCAGCTGCACC------TTCG------------------GGG------GATGCTAGCAACCGCATCGGTGGTGG------CGA---TTTGCTGGCGGCTCCCAGCGAT
droTak1 scf7180000415347:123403-123619 - TGCGCCGCTGAAATTCAATATTTTCGAGAAGAAATTCCCCACGGGCACGGGTGAG------------------------C---CCG------------------------------------------------------------------------AGG------AGCTG-----------------CCCCTGCCGCCGG---------------------------------------CAACGCAGGCCAGCAACAGCAACAGCAGC------------ACCA----------------------CAGCATCATCACCAGCAGGAGCAG------------CA---------TCAACGA------------CACCAGCTGCTCC------CTCG------------------GGG------GAGGCCAGTGGCCGCATTGCTGGCGG------GGA---CTTGCAGGCGGCTCCCAGCAAT
droEle1 scf7180000491087:634610-634871 + TGCACCCCTCAAGTTCAATATATTCGAGAAGAAATTCCCCACGGGCACGGGCTCGGCCACGGGCACGGT---------------------------------------------------------------------------------TGAGCCCGAGG------AGCTG-----------------CCACTGCCGCCGGACATG---------------------------GTGGCAGCAACACATGCAAGTAGCAGCAG------C------------AGCA-------TCAACAG------TTCAGCAGCGACATCTACCAGCACGA------CGGCAACA---------ACAACCACGACGA---------CAGCCGCCCC------TGAGGGCAAT---------------------GCTGCCGGCAATCGCATTGCTGGGGG------GGA---TTTGCAGGCTGCTCCCAGCAAT
droRho1 scf7180000773899:8134-8380 - TGCACCGCTGAAGTTCAATATATTCGAGAAGAAATTCCCCACCGGCACGGGCGAG------------------------CCGCCCG------------------------------------------------------------------------AGG------AGCTG-----------------CCCCTGCCGCCGGATATG---------------------------GTGGCAGCAACACATGCCAGCAGCATCAGCAGCAGCA-------------------GCAGCACCAC------CACAGCAGCAACATCTGGCAGCACAG------CGACGACA---------ACCACGACGA------------CAGCTTCGCC------TCCG------------------GGG------GAAACTGGCAATCGCATAGCTGGCGG------GGA---TCTGCAGGCGGCTCCCAGCAAT
droFic1 scf7180000453495:7870-8107 - CGCGCCGCTGAAGTTCAACATCTTCGAGAAGCGGTTTCCCACGGGCACAGGAGCGGG---------------------------------------------------------------------------------------------TGAGCAGGAGG------ATCCT-----------------CCTTTGCCCGCGGACATG---------------------------GAGGCAGTGGCCAATGCCA------CCGG------C------------CCTT----------------------CAGTTGCTCCTCCTGCCAGCACAG------CGGCTACC---------ACGTCTACAACCACCAGCACGAC---GGCTCC------TCCG------------------GCG------GAAGCCTACCGACGCACTGCAGGCGG------GGA---TCTGCAGGCATCTCCCAGCGAC
droKik1 scf7180000302398:196817-197033 + TGCACCCTTAAAGTTTAATATATTTGAAAA---GTTCCCCACGGGCACCGGTGAG------------------------C---CCGAGG---------------------------------------------------------------TGGAGGTGG------AGCTG-----------------GACCTGGACCAGGACATG---------------------------CTGGCC------------AGC------AG------TGCGAACTCG---ACCACA-----A---CCTCTGCCA--CCACCACCACATCCACTTCCACAG------AGGCAACA---------GCAACA---------------CCAC------------------------------------------------CTGCCAATCGCATAGCTGGCGG------GGA---TTTGCTGGCAGCTCCCAGCAAT
droAna3 scaffold_12929:1128142-1128370 + TGCCCCGCTGAAGTTTAACATTTTCGAGAAGAAATTCCCCACGGGAACGGGTGAA------------------------C---CCGACA---------------------------------------------------------------------CTG------AGCTG-----------------GGAGCACTGCTGGGAGC---------CATTCCCCCGCCAGTCGCGACAAACACAA---ATGCGACA-------------------------------------------------------------------AACACAACAG------CTCCGGAA---------TCGTCATCGA------------GTCCTCCGCC------TCCGGGCTATGG---G------ATG------GATGATGGGAATCGCATTGCCAACGG------CGA---CCTACAGGCCTCCTCCAGCAAT
droBip1 scf7180000396380:53290-53503 + TGCACCGCTGAAGTTTAACATTTTCGAGAAGAAATTCCCCACGGGAACGGGTGAA------------------------C---CCG------------------------------------------------------------------------ACA--------------------------------------CGGACCTGCTGGGTGCCATACCCC-------------------------CGCCAGC---------TG---TG--CCTCCAGCTCCAAAA-----G---CG--------------------------AGCAAT------------------------GCAACGACAACAA------------CCACTCCTCCGCCTCCGGGCGATGGTCCA------ATG---------GATGGCAATCGTATAGCCAACGG------CGA---CCTACAAGCCTCCTCCAGCAAT
dp5 XL_group1a:8309415-8309673 + CGCTCCGCTCAAGTTTAATATATTCGAAAAGAAGTTTCCCACGGGCCCCGCCCCCGGCGGGGAGTCCTCACCCGAGGAGTC------------------GCC------------------------------------------------------CGAGGAGGAGACAG-----------------CCAGGCTGCCACC------------------------------------------AAT-------------------AGTTGCG--GCCACAGCCACCACA-----G---CC-----------ACCGCCA---CCACCACCACCA------CGCCGAAG------CCTGCAACCACGCCCA---------CAGCTACACC------------------------GAATCCAAAGCCAACTCCCAGCAATCGCATTCCTGCTGGAG---GAGA---TCTCCAGGCCGCCTCCAGCAAT
droPer2 scaffold_15:682420-682681 + CGCTCCGCTCAAGTTTAATATATTCGAAAAGAAGTTTCCCACGGGCCCCGCCCTCGGCGGGGAGTCCTCACCCGAGGAGTC------------------GCC------------------------------------------------------CGAGGAAGAGACAG-----------------CCAGGCTGCCACC------------------------------------------AAT-------------------AGTTGCG--GCCACAGCC---ACA-----G---CCA--------CCACCGACACCGCCACCACCACCA------CGCCGAAG------CCCGCAACCACGACCA---------CAGCTACACC------------------------GAATCCAAAGCCAACTCCCAGCAATCGCATTCCTGCTGGAG---GAGA---TCTCCAGGCCGCCTCCAGCAAT
droWil2 scf2_1100000004515:2041700-2041982 + TGCACCACTTAAATTTAATCTATTTGAGAAGAAATTTCCAACGGGAACGGGAACGGGCACGGATACAACTGAACAGGAATC---------------------------------------------------------------------------CCTGGATGATATGTTG-----------------ATGCTGCCACCCGAAATG------------------------------AATGCAACTGCTACAATTAATGGCAA------T------------GCGA--CGGCAACAACA--------ACAGCAGCAACATTTATTGAACAAG--C-CACGCCCACTGCTTCGGTAG---------------------CAACTACCCC------------------------ACGGCAAGCGGAAGGTATTAACAATGCAATTGCCCAAGGTG---ATGATCTATTACAGGCCGCGTCCAGTAAT
droVir3 scaffold_12970:4482121-4482355 - TGCCCCACTCAAGTTCAATATATTTGAGAAGAAGTTTCCCACGGCGCCA------------------------------------G------------------------------------------------------------------------AG--------GCTG------------------TGCTGCAGCCCGATGTT---------------------------GTTAATGCAACG----ACAGCAACAACAG------C------------AACA---------------------------TCGACTTCA---ATGACCACGCCCACACCCACGCCCACTATAGCAACAATGCGCG---------AAGACG--CC------CTC----------------AAGGCGCAGCGGCAGCCGGATAATCGAATTGCTGAAGGCGCTGAAGA---TCTGCAGGCGGATGCCAGCAAT
droMoj3 scaffold_6473:7468119-7468362 - TGCACCACTCAAATTCAATATATTTGAAAAGAAGTTTCCCACGGCATCGG---AG------------------------T---CTG------------------------------------------------------------------------ATG--------TTGTCAATACAACGACAGCAACATTGCCATC------------------------------------------GAT-------------------TG---CA--ACGGCAACG--------GCAACAGCA-----------ACAGCAACGGCAACTACCAC---------GCCCACACCCACAATAGCAACGATGCGCG---------AAGACG--CC------CTC----------------AAGGCGCAGCAGAGGCCGAATAATCGCATTGCCGATAGCGACCAAGA---TCTGCAGGCTGATGCGAGCAGC
droGri2 scaffold_15203:10787258-10787504 + TGCACCACTCAAGTTTAATATATTCGAAAAGAAGTTTCCCACCGCTCCCGACGAG------------------------T---CA-----------------------------------------------------------------------------------------------------------ATGCAACCCGATGCT---------------------------GTCAATACGA----CGTCAGC---------AATAGCA--ACAACACCT---GCA-----A---CTGCT--------ATTGCCACTGCAACGACCGC---------GGCCACGCCCACAATAGCAACATTGCGTA---------AAGAT------------------GAT---GCACTGAAGACGCAGCGTCAGTCAGACAATCGAATCACTGCTGATGCTCAAGA---TCTTCAGGCTGATGCCAGCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCACCACTGAAATTCAATATTTTTGAGAAGAAATTCGCCACGGGCACGGGTGAG------------------------C---CCGAGGAGCTGCCACTGCCGCCGGACATATTCTTCCATCAGGCCGTCCTGACAGCAGAGGGCACGGGTGAGCCCGAGG------AGCTG-----------------CCACTGCCGCCGGACATG---------------------------GCTGCTGCAACATATGTCAAAAACATCAG------T------------AGCA----------------------CAGCAGAAACATCAACTAGCACCA------CGCCCACG---------TCAACGGCGACTGTTGCCCTACCGTTTGTTCC------TTCG------------------GGA------GAGGCCAGTAACCGCATTCCCGGCGG------CGA---TTTGCTGGCGGCCCCCAGTGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................CAACTAGCACCA------CGCCCACG---------TCAACGGC.........................................................................................................................2811.00100000000100000000
.............................................................................................................................................................................................................................................................AAAACATCAG------T------------AGCA----------------------CAGCAGAAACAT....................................................................................................................................................................2711.00100000000000010000
...............................................................................................................................................................................................ACTGCCGCCGGACATG---------------------------GCTG......................................................................................................................................................................................................................................................2011.00110000000000000000
................................................................................................................................................................................................................................................................ACATCAG------T------------AGCA----------------------CAGCAGAAACATCAAC................................................................................................................................................................2811.00100000001000000000
droSec2
TGCACCACTGAAATTCAATATTTTTGAGAAGAAATTCGCGACGGGCACGGGTGAG------------------------C---CTG------------------------------------------------------------------------AGG------AGCTG-----------------TCACTGCCGCCGGTCATG---------------------------GCTGCTGCAACATATGTCAAAAACATCAG------T------------AGCA----------------------CAGCAGAAACATCAACTAGCACCA------CGCCCACG---------TCAACGGCGACTGTTGCCCTACCGTTTGTTCC------TTCG------------------GGA------GACGCCAGTAACCGCATTCCCGGCGG------CGA---TTTGCTGGCGGCCCCCAGTGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TGCACCACTGAAATTTAATATTTTTGAGAAGAAATTCCCCACGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------CCACTACCGCCGGACATG---------------------------GCGGCTGCAACATATGCCAAAAACATCAG------T------------ACCA----------------------CACCAGAAACATCAACTAGCATCA------CGCCCACG---------TCAACGACGACTTTTGCCGTACCGTCTGTTCC------TTCG------------------GGA------GAGGCCAGTAACCGCATTCCCGGCGGCG---TCGA---TTTGCTGGCGGCCCCCAGTGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................CACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------CCA....................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CCCCACGGGCACGGGTGAG------------------------C---A................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCCCCACGGGCACGGGTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------CCACT..................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGGCGGCG---TCGA---TTTGCTG...............2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCCCCACGGGCACGGGTGAG------------------------C---.................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGTTCC------TTCG------------------GGA------GAGGCCAGTAACCGC.............................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AG...........................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CCCACG---------TCAACGACGACTTTTGCCGT.............................................................................................................2612.0020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCATTCCCGGCGGCG---TCGA---......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------C......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................GGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------CCA....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AG...........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GACTTTTGCCGTACCGTCTGTTCC------TTC........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................G------AGATG-----------------CCACTACCGCCGAC.........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------CCA....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------CCACTACC...............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCACGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------.............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTCCCGGCGGCG---TCG..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TGCCGTACCGTCTGTTCC------TTCG------------------GGA------GAG.........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................TTCCCCACGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------A.....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AG------T------------ACCA----------------------CACCAGAAACATCAACT...............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TACCGTCTGTTCC------TTCG------------------GGA------GAGGCCAG....................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCAGTAACCGCATTCCCGGCGGCG---.............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCC------TTCG------------------GGA------GAGGCCAGTAACCGC.............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCGGCG---TCGA---TTTGCTA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AG....................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATTCCCCACGGGCACGGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------AGATG-----------------.......................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TTTTGCCGTACCGTCTGTTCC------TTC........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GCCGGACATG---------------------------GCGGCTGCAACATATGC.........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCTGTTCC------TTCG------------------GGA------GAGGC.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGGCGGCG---TCGA---TT....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACCGCATTCCCGGCG...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGGCGGCG---TCGA---TTTGCTGGC.............2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TTTTGCCGTACCGTCTGTTCC------TT.........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TGCCGTACCGTCTGTTCC------TTCG------------------GGA------A...........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGGCGGCG---TCGA---TTTGCTG...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................CG------------------------------------------------------------------------AGG------AGATG-----------------CCACTACCGCCGGACAA......................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CATCAACTAGCATCA------CGCCCA............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................G------------------------------------------------------------------------AGG------AGATG-----------------CCACTACCGCCGG..........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................ATGCCAAAAACATCAG------T------------ACCA----------------------................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCATTCCCGGCGGCG---TCGA---T.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................G---------------------------GCGGCTGCAACATATGCC........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ATCAG------T------------ACCA----------------------CACCAGAAACA.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CCCACGGGCACGGGTGAG------------------------C---ACG------------------------------------------------------------------------AGG------A............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGTTCC------TTCG------------------GGA------GAGGC.......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CC------TTCG------------------GGA------GAGGCCAGTAACCGCAA...........................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TACCGTCTGTTCC------TTCG------------------GGA------G...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
droEre2
CGCACCACTGAAGTTCAACATTTTTGAGAAGAAGTTCCCCACGGGCACGGGTGAG------------------------T---CCG------------------------------------------------------------------------AGG------AGCTG-----------------CCCCTGCCGCCGGACACG---------------------------GTGGCTGCAACATATGCCCAAAACATCAG------T------------ACCA----------------------CAGCAGAAACACTAACTAGCACAG------CGCCCACG---------TCAACGACGCCTGTTGCCATACCGGCTGTGCC------TTCG------------------GGA------GAGGCCAGTAACCGCATTTCCGGCGG------CGA---CTTGCTGGCGGCCCCCAGTGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................AGCACAG------CGCCCACG---------TCAACGACGC.......................................................................................................................2511.0011000000
.................................GTTCCCCACGGGCACGGGTGAG------------------------T---C................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
droYak3
TGCACCACTGAAATTTAACATTTTTGAGAAGAAATTCCCCACGGGCACGGGAGAG------------------------T---CCG------------------------------------------------------------------------AGG------AGGTG-----------------CCACTGCCGCCGGACATG---------------------------GTGGCTGCAACATATGCCAAAAACATCAG------T------------ACCA----------------------CAGCAGAAACAACAACTAGCACAG------CGCCCACG---------TCAACGGCGACTGTTGCCACACCGGCAGTTCC------TTCG------------------GGA------GAGCTCAGTAAGCGCACTTCCGGAGG------CGA---TTTGATGGCGGCCCCCAGTGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................A------GAGCTCAGTAAGCGCACTTCCGGAGG------C...........................2812.00200000020000
...........................................................................................................................................................................G-----------------CCACTGCCGCCGGACATG---------------------------GT........................................................................................................................................................................................................................................................2111.00100000010000
.................................ATTCCCCACGGGCACGGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................................................................................................................................................................................................................................................................................................................................G------CGCCCACG---------TCAACGGCGACTGTTGC................................................................................................................2611.00100100000000
.....................TTTTGAGAAGAAATTCCCCACGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................ACTAGCACAG------CGCCCACG---------T................................................................................................................................1911.00101000000000
............ATTTAACATTTTTGAGAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTTCCGGAGG------CGA---TTTGATGGC.............2611.00100010000000
................................AATTCCCCACGGGCACGGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................................................................GCCAAAAACATCAG------T------------ACCA----------------------CAGCA...........................................................................................................................................................................2411.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGAGG------CGA---TTTGATGGCGGCCCCC......2611.00100100000000
droEug1
TGCACCACTGAAATTCAATATATTCCAGAAGAAATTCCCCACAGGTTCGGGTGAG------------------------C---CCG------------------------------------------------------------------------AGG------TTCAG-----------------GCGCTACCGCAGGACATG---------------------------GTGGGTGCCTCAAATGCCGGCAACAGCAG------C------------ACCA----------------------CAG---CGACGTCCACTACCACAG------CAGGAACA---------TCAGCGTCGAACACGACGACACCAGCTACTCC------TCCT------------------TAT------AAG---------------CCCAACGG------GGA---CTTGCAGGCAGCCCCCAGTAATSizeHit CountTotal NormTotal
No Reads
droBia1
TGCACCGCTGAAATTCAATATTTTCGAGAAGAAATTCCCCACGGGCACGGGCGAG------------------------C---CCG------------------------------------------------------------------------AGG------AGCCG-----------------CCAATGCCGCCGGACGTG---------------------------TTGGCATCAATATCTGCCGGCAACAGCAG------T------------TTCA----------------------CAGCAGCAACGTCAGCCAGCACAG------CGGCGACG---------TCAACGACGACTGTGAGCACACCAGCTGCACC------TTCG------------------GGG------GATGCTAGCAACCGCATCGGTGGTGG------CGA---TTTGCTGGCGGCTCCCAGCGATSizeHit CountTotal NormTotal
No Reads
droTak1
TGCGCCGCTGAAATTCAATATTTTCGAGAAGAAATTCCCCACGGGCACGGGTGAG------------------------C---CCG------------------------------------------------------------------------AGG------AGCTG-----------------CCCCTGCCGCCGG---------------------------------------CAACGCAGGCCAGCAACAGCAACAGCAGC------------ACCA----------------------CAGCATCATCACCAGCAGGAGCAG------------CA---------TCAACGA------------CACCAGCTGCTCC------CTCG------------------GGG------GAGGCCAGTGGCCGCATTGCTGGCGG------GGA---CTTGCAGGCGGCTCCCAGCAATSizeHit CountTotal NormTotal
No Reads
droEle1
TGCACCCCTCAAGTTCAATATATTCGAGAAGAAATTCCCCACGGGCACGGGCTCGGCCACGGGCACGGT---------------------------------------------------------------------------------TGAGCCCGAGG------AGCTG-----------------CCACTGCCGCCGGACATG---------------------------GTGGCAGCAACACATGCAAGTAGCAGCAG------C------------AGCA-------TCAACAG------TTCAGCAGCGACATCTACCAGCACGA------CGGCAACA---------ACAACCACGACGA---------CAGCCGCCCC------TGAGGGCAAT---------------------GCTGCCGGCAATCGCATTGCTGGGGG------GGA---TTTGCAGGCTGCTCCCAGCAATSizeHit CountTotal NormTotal
No Reads
droRho1
TGCACCGCTGAAGTTCAATATATTCGAGAAGAAATTCCCCACCGGCACGGGCGAG------------------------CCGCCCG------------------------------------------------------------------------AGG------AGCTG-----------------CCCCTGCCGCCGGATATG---------------------------GTGGCAGCAACACATGCCAGCAGCATCAGCAGCAGCA-------------------GCAGCACCAC------CACAGCAGCAACATCTGGCAGCACAG------CGACGACA---------ACCACGACGA------------CAGCTTCGCC------TCCG------------------GGG------GAAACTGGCAATCGCATAGCTGGCGG------GGA---TCTGCAGGCGGCTCCCAGCAATSizeHit CountTotal NormTotal
No Reads
droFic1
CGCGCCGCTGAAGTTCAACATCTTCGAGAAGCGGTTTCCCACGGGCACAGGAGCGGG---------------------------------------------------------------------------------------------TGAGCAGGAGG------ATCCT-----------------CCTTTGCCCGCGGACATG---------------------------GAGGCAGTGGCCAATGCCA------CCGG------C------------CCTT----------------------CAGTTGCTCCTCCTGCCAGCACAG------CGGCTACC---------ACGTCTACAACCACCAGCACGAC---GGCTCC------TCCG------------------GCG------GAAGCCTACCGACGCACTGCAGGCGG------GGA---TCTGCAGGCATCTCCCAGCGACSizeHit CountTotal NormTotal
No Reads
droKik1
TGCACCCTTAAAGTTTAATATATTTGAAAA---GTTCCCCACGGGCACCGGTGAG------------------------C---CCGAGG---------------------------------------------------------------TGGAGGTGG------AGCTG-----------------GACCTGGACCAGGACATG---------------------------CTGGCC------------AGC------AG------TGCGAACTCG---ACCACA-----A---CCTCTGCCA--CCACCACCACATCCACTTCCACAG------AGGCAACA---------GCAACA---------------CCAC------------------------------------------------CTGCCAATCGCATAGCTGGCGG------GGA---TTTGCTGGCAGCTCCCAGCAATSizeHit CountTotal NormTotal
No Reads
droAna3
TGCCCCGCTGAAGTTTAACATTTTCGAGAAGAAATTCCCCACGGGAACGGGTGAA------------------------C---CCGACA---------------------------------------------------------------------CTG------AGCTG-----------------GGAGCACTGCTGGGAGC---------CATTCCCCCGCCAGTCGCGACAAACACAA---ATGCGACA-------------------------------------------------------------------AACACAACAG------CTCCGGAA---------TCGTCATCGA------------GTCCTCCGCC------TCCGGGCTATGG---G------ATG------GATGATGGGAATCGCATTGCCAACGG------CGA---CCTACAGGCCTCCTCCAGCAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAATCGCATTGCCAACGG------C...........................2412.002020000
..............................................................................................................................................................................................................................................................A-------------------------------------------------------------------AACACAACAG------CTCCGGAA---------TC...............................................................................................................................2111.001010000
.............................................AACGGGTGAA------------------------C---CCGACA---------------------------------------------------------------------CTG------AGCT.........................................................................................................................................................................................................................................................................................................................2411.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGG---G------ATG------GATGATGGGAATC...............................................2011.001000001
...........................................................................................................................................................................................................................................................GACA-------------------------------------------------------------------AACACAACAG------CTCC..............................................................................................................................................1811.001010000
..............................................ACGGGTGAA------------------------C---CCGACA---------------------------------------------------------------------CTG------AGC..........................................................................................................................................................................................................................................................................................................................2211.001100000
.......................................CACGGGAACGGGTGAA------------------------C---CCGACA---------------------------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................2411.001000010
droBip1
TGCACCGCTGAAGTTTAACATTTTCGAGAAGAAATTCCCCACGGGAACGGGTGAA------------------------C---CCG------------------------------------------------------------------------ACA--------------------------------------CGGACCTGCTGGGTGCCATACCCC-------------------------CGCCAGC---------TG---TG--CCTCCAGCTCCAAAA-----G---CG--------------------------AGCAAT------------------------GCAACGACAACAA------------CCACTCCTCCGCCTCCGGGCGATGGTCCA------ATG---------GATGGCAATCGTATAGCCAACGG------CGA---CCTACAAGCCTCCTCCAGCAATSizeHit CountTotal NormTotal
No Reads
dp5
CGCTCCGCTCAAGTTTAATATATTCGAAAAGAAGTTTCCCACGGGCCCCGCCCCCGGCGGGGAGTCCTCACCCGAGGAGTC------------------GCC------------------------------------------------------CGAGGAGGAGACAG-----------------CCAGGCTGCCACC------------------------------------------AAT-------------------AGTTGCG--GCCACAGCCACCACA-----G---CC-----------ACCGCCA---CCACCACCACCA------CGCCGAAG------CCTGCAACCACGCCCA---------CAGCTACACC------------------------GAATCCAAAGCCAACTCCCAGCAATCGCATTCCTGCTGGAG---GAGA---TCTCCAGGCCGCCTCCAGCAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CGCTCCGCTCAAGTTTAATATATTCGAAAAGAAGTTTCCCACGGGCCCCGCCCTCGGCGGGGAGTCCTCACCCGAGGAGTC------------------GCC------------------------------------------------------CGAGGAAGAGACAG-----------------CCAGGCTGCCACC------------------------------------------AAT-------------------AGTTGCG--GCCACAGCC---ACA-----G---CCA--------CCACCGACACCGCCACCACCACCA------CGCCGAAG------CCCGCAACCACGACCA---------CAGCTACACC------------------------GAATCCAAAGCCAACTCCCAGCAATCGCATTCCTGCTGGAG---GAGA---TCTCCAGGCCGCCTCCAGCAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGCACCACTTAAATTTAATCTATTTGAGAAGAAATTTCCAACGGGAACGGGAACGGGCACGGATACAACTGAACAGGAATC---------------------------------------------------------------------------CCTGGATGATATGTTG-----------------ATGCTGCCACCCGAAATG------------------------------AATGCAACTGCTACAATTAATGGCAA------T------------GCGA--CGGCAACAACA--------ACAGCAGCAACATTTATTGAACAAG--C-CACGCCCACTGCTTCGGTAG---------------------CAACTACCCC------------------------ACGGCAAGCGGAAGGTATTAACAATGCAATTGCCCAAGGTG---ATGATCTATTACAGGCCGCGTCCAGTAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAAGGTG---ATGATCTATT...................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................AG---------------------CAACTACCCC------------------------ACGGCAAGC................................................................2111.00100010
...................................................AACGGGCACGGATACAACTGAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
...................................................................................................................................................................................................................................................................................................CAACAACA--------ACAGCAGCAACA.....................................................................................................................................................................20200.15300030
..................................................................................................................................................................................................................................................................................................GCAACAACA--------ACAGCAGCAACAT....................................................................................................................................................................22160.06101000
droVir3
TGCCCCACTCAAGTTCAATATATTTGAGAAGAAGTTTCCCACGGCGCCA------------------------------------G------------------------------------------------------------------------AG--------GCTG------------------TGCTGCAGCCCGATGTT---------------------------GTTAATGCAACG----ACAGCAACAACAG------C------------AACA---------------------------TCGACTTCA---ATGACCACGCCCACACCCACGCCCACTATAGCAACAATGCGCG---------AAGACG--CC------CTC----------------AAGGCGCAGCGGCAGCCGGATAATCGAATTGCTGAAGGCGCTGAAGA---TCTGCAGGCGGATGCCAGCAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................AACAACAG------C------------AACA---------------------------TCGACTTCA---AT.............................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCAACAATGCGCG---------AAGAC......................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCCGGATAATCGAATTGCT.......................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCGGATAATCGAATTGC........................................2111.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGATAATCGAATTGCTGAAGGC.................................2611.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGCTGAAGGCGCTGAAGA---TCTGCAGGCGGATGCC......3911.001000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCTGAAGGCGCTGAAGA---TC....................2311.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................CAACG----ACAGCAACAACAG------C------------AACA---------------------------TC.........................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGCGCTGAAGA---TCTGCAGGC.............2411.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCGGATAATCGAATTGCTGAAG...................................2611.001000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAATCGAATTGCTGAAGG..................................2111.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CAATGCGCG---------AAGACG--CC------CTC----------------AAG.....................................................................2311.001000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CG----ACAGCAACAACAG------C------------AAC.......................................................................................................................................................................................................19110.091000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................G----ACAGCAACAACAG------C------------AAC.......................................................................................................................................................................................................18200.051000000000000000100000000000000000000000000000000000000000000000
droMoj3
TGCACCACTCAAATTCAATATATTTGAAAAGAAGTTTCCCACGGCATCGG---AG------------------------T---CTG------------------------------------------------------------------------ATG--------TTGTCAATACAACGACAGCAACATTGCCATC------------------------------------------GAT-------------------TG---CA--ACGGCAACG--------GCAACAGCA-----------ACAGCAACGGCAACTACCAC---------GCCCACACCCACAATAGCAACGATGCGCG---------AAGACG--CC------CTC----------------AAGGCGCAGCAGAGGCCGAATAATCGCATTGCCGATAGCGACCAAGA---TCTGCAGGCTGATGCGAGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGCACCACTCAAGTTTAATATATTCGAAAAGAAGTTTCCCACCGCTCCCGACGAG------------------------T---CA-----------------------------------------------------------------------------------------------------------ATGCAACCCGATGCT---------------------------GTCAATACGA----CGTCAGC---------AATAGCA--ACAACACCT---GCA-----A---CTGCT--------ATTGCCACTGCAACGACCGC---------GGCCACGCCCACAATAGCAACATTGCGTA---------AAGAT------------------GAT---GCACTGAAGACGCAGCGTCAGTCAGACAATCGAATCACTGCTGATGCTCAAGA---TCTTCAGGCTGATGCCAGCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................GAT------------------GAT---GCACTGAAGACGCA................................................................2012.00202
.................................................................................................................................................................................................................................................................................................................................................................................................................AT---GCACTGAAGACGCAGCGTCAGTCA......................................................2611.00110

Generated: 05/18/2015 at 08:39 PM