ID:

dsi_25850

Coordinate:

2r:5656233-5656296 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5656005_5656232_+]; CDS [2r_5656005_5656232_+]; CDS [2r_5656297_5656530_+]; exon [2r_5656297_5656530_+]; intron [2r_5656233_5656296_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------################################################## TACAACCATACACGACATCATTGAGATGACCACCTCCGGTTCGGGTTCGGGTGAGTTCCATGGGGGGGCTAATTCCCATCTGCATCTTGGCGTCATTTTGTACTTCCCTTTCAGCTGGTCTTCCGCTGCTGGTGCAGCGTTCCATTGCCCGGCAGGTGCAGCTG ************************************************..........((((((((............(((......))).............)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	M025 embryo
.....................TGAGATGACCACCTCCGGTTCGGGT......................................................................................................................	25	0	1	2.00	2	0	2	0	0	0	0	0
....................TTGAGATGACCACCTCCGGTTCGGGTT.....................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................GGTCTTCCGCTGCTGGTGCAGCGT........................	24	0	1	1.00	1	1	0	0	0	0	0	0
..........................CGACCACCTCCGGTTCGGGTTCGGC.................................................................................................................	25	2	1	1.00	1	1	0	0	0	0	0	0
......................GAGATGACCACCTCCGGTTCGGGT......................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0
................................TCTCCGGTTCGGGTCCGGGCGA..............................................................................................................	22	3	2	0.50	1	0	0	0	0	1	0	0
...............................ACCTCCGGTTCGGGT......................................................................................................................	15	0	2	0.50	1	1	0	0	0	0	0	0
............................................................................................................GTTCGGCTGGTCTTCCGCT.....................................	19	2	4	0.25	1	0	0	0	0	0	1	0
.............GACACCAATGAGATGACC.....................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	1	0
...............TATCATTGGGAGGACCACC..................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	1

Anti-sense strand reads

ATGTTGGTATGTGCTGTAGTAACTCTACTGGTGGAGGCCAAGCCCAAGCCCACTCAAGGTACCCCCCCGATTAAGGGTAGACGTAGAACCGCAGTAAAACATGAAGGGAAAGTCGACCAGAAGGCGACGACCACGTCGCAAGGTAACGGGCCGTCCACGTCGAC ************************************************..........((((((((............(((......))).............)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..........................................................................................GCAGTAAAACAAGAAGG.........................................................	17	1	2	0.50	1	1	0	0	0
.................AGAAACTCTACTCGTGAAGGC..............................................................................................................................	21	3	4	0.25	1	0	0	1	0
........................................................................................................AGAGAAAGTCGACGAGACGGCG......................................	22	3	4	0.25	1	0	1	0	0
..................................................................................................................................CCGCGTCGCAAGGTA...................	15	1	10	0.10	1	1	0	0	0
........................................................................................................................................CGCAAGGTAACGCGGTGTCC........	20	3	18	0.06	1	0	0	0	1
..........................................................................................................................................TAAGGTAACGGGCCG...........	15	1	20	0.05	1	0	1	0	0

Generated: 04/23/2015 at 08:56 PM