ID:

dsi_25847

 Coordinate:

4:1009005-1009154 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.6 -5.0 -5.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+
DNAREP1_DYakRCHelitron+
mature
star
  1. 2r:2658012-2658031 -
  2. dsi_25689  4:1008793-1008812 +
  3. dsi_25847  4:1009134-1009153 +

Sense Strand Reads

TACAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGCTTCATTGGTAAGTTAATATCATTTTAAAAACTTAAAGTAATGTTAGTTTATTATACCCGTTACGGGTTTACTACTCAGCGAGTCGAAAAGTATGTAACAGGTAGAAGGAAACGTTTCCGACCATATGAAGTATATCAGGATCAATAGCCGAGTCGCAGCGCAAGTTTGTTTCTAAATTATGTCACCCCCACTCTTACGCCCATAAAC
********************************************************************************************************************************......(((((....(((...((((....)))).....)))....))))).....................*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 O001
Testis
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAA................................................................................................ 26 0 1 18.00 18 16 0 0 0 2 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGA.................................................................................................. 24 0 20 14.50 290 158 38 40 32 9 10 3 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAA................................................................................................. 25 0 18 11.61 209 125 34 13 27 1 6 3 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGATA................................................................................................ 26 1 3 4.33 13 13 0 0 0 0 0 0 0 0
TACAGAATCTTACACTGGAGTATAGGC............................................................................................................................................................................................................................... 27 0 1 4.00 4 0 2 1 0 0 0 0 1 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGTAA................................................................................................ 26 1 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGG................................................................................................... 23 0 20 2.95 59 36 13 0 5 1 2 1 1 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGACA................................................................................................ 26 1 2 2.50 5 5 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAAT............................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAAC............................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGATAT............................................................................................... 27 2 5 1.60 8 8 0 0 0 0 0 0 0 0
...............................................................................................................................GAAAAGTATGTAACAGGTAGAAGGAAA................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGT.................................................................................................. 24 1 20 1.00 20 18 0 0 0 1 0 1 0 0
.........TTACACTGGAGTATAGGCTCAACGACCCA.................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..........TACACTGGAGTATAGGCTCAACGACCCA.................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................AGGATCAATAGCCGAGTCGC................................................... 20 0 3 0.67 2 0 0 0 0 0 0 0 0 2
................................................................................................................................AAAAGTATGTAACAGGTAGAAG.................................................................................................... 22 0 20 0.60 12 8 0 0 1 0 3 0 0 0
................................................................................................................................AAAAGTATGTAACAGTTAGAAGGAAA................................................................................................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGGAA................................................................................................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTGACAGGTAGAAGGTAA................................................................................................ 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................ATAAGTATGTGACAGGTAGAAGGAAA................................................................................................ 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGTA................................................................................................. 25 1 20 0.50 10 8 0 0 0 2 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGGAAA............................................................................................... 27 2 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAAT................................................................................................ 26 1 20 0.30 6 0 2 1 0 3 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGG.......................................................................................................... 16 0 20 0.30 6 0 0 0 0 0 6 0 0 0
................................................................................................................................AATAGTATGTAACAGGTAGAAGGAAA................................................................................................ 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................GAAAAGTATGTAACAGGTAGAAGGA.................................................................................................. 25 0 16 0.25 4 4 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGTCA................................................................................................ 26 2 4 0.25 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGTAAA................................................................................................ 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................TAAGATCATTTTGAAAACTTAT............................................................................................................................................................................ 22 3 13 0.23 3 0 0 0 0 0 0 0 3 0
.....................................................................................................................................TATGTAACAGGTAGAAGG................................................................................................... 18 0 20 0.20 4 0 0 0 0 0 4 0 0 0
.................................................................................................................................................................................TCAGGATCAATAGCCGAGTC..................................................... 20 0 20 0.20 4 0 0 0 0 0 4 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGT................................................................................................... 23 1 20 0.20 4 2 0 0 0 2 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGGTA................................................................................................ 26 2 6 0.17 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TATGTAACAGGTAGAA..................................................................................................... 16 0 20 0.15 3 0 0 0 0 0 3 0 0 0
................................................................................................................................AAAAGTATGTAACAGGT......................................................................................................... 17 0 20 0.15 3 0 0 0 0 0 3 0 0 0
..................................................................................................................................AAGTATGTAACAGATAGAAGGGAAA............................................................................................... 25 3 7 0.14 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGCTAT............................................................................................... 27 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................GAAAAGTATGTAACAGGTAGAAGGAA................................................................................................. 26 0 15 0.13 2 2 0 0 0 0 0 0 0 0
.................................................................................................................CTACTATGCGAGTCGAAGA...................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................TATGTAACAGGTAGAAGGA.................................................................................................. 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0
.................................................................................................................................AAAGTATGTAACAGGTAGAAG.................................................................................................... 21 0 20 0.10 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................................TATGTAACAGGTAGAAGGAA................................................................................................. 20 0 20 0.10 2 0 0 0 0 0 2 0 0 0
........................................................TGATATCATTTTGAAAACTTAT............................................................................................................................................................................ 22 3 10 0.10 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................CGCAGCGCAAGTTTGTT..................................... 17 0 20 0.10 2 0 0 0 0 0 2 0 0 0
................................................................................................................................ATAAGTATGTGACAGGTAGAAGGAA................................................................................................. 25 2 20 0.10 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TATCAGGATCAATAGC........................................................... 16 0 12 0.08 1 0 0 0 0 0 1 0 0 0
........................................................TGAGATCATTTTAAAAACT............................................................................................................................................................................... 19 2 14 0.07 1 0 0 0 0 0 1 0 0 0
........................................................TAAGATCATTTTAAAAGCT............................................................................................................................................................................... 19 2 15 0.07 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................GAAAAGTATGTAACAGGTAGAAGG................................................................................................... 24 0 17 0.06 1 0 0 0 1 0 0 0 0 0
........................................................TAATGTCATTTTAAAAA................................................................................................................................................................................. 17 1 18 0.06 1 0 0 0 0 0 0 1 0 0
................................................................................................................................AAAAGGATGTAACAGGTAGAAGGAA................................................................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................AACAGATAGAAGGAAA................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................................................CTACTCAGGGAGTCA.......................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................TGTAACAGGTAGAAGGAA................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................TCAGGATCAATAGCCGAGTCG.................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGTT.................................................................................................. 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGTAA................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGAG................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTAGAAGGC.................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGAATGTAACAGGTAGAAGG................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTATGCAACAGGTAGAAGGAA................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................CGCAGCGCAAGTTTGT...................................... 16 0 20 0.05 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................AAGTATGTAACAGGTAGAAGGAA................................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................................................................TAAAGTATGTAACAGGTAGAAGGA.................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................AAAGTATGTAACAGGTAGAAGG................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................................................................................................AAAAGTATGTAACAGGTATAAGGA.................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ATGTCTTAGAATGTGACCTCATATCCGAGTTGCTGGGTATACGAAGTAACCATTCAATTATAGTAAAATTTTTGAATTTCATTACAATCAAATAATATGGGCAATGCCCAAATGATGAGTCGCTCAGCTTTTCATACATTGTCCATCTTCCTTTGCAAAGGCTGGTATACTTCATATAGTCCTAGTTATCGGCTCAGCGTCGCGTTCAAACAAAGATTTAATACAGTGGGGGTGAGAATGCGGGTATTTG
***************************************************......(((((....(((...((((....)))).....)))....))))).....................******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
................................................................................................ATGCGGAATGCCCAAATG........................................................................................................................................ 18 2 3 2.33 7 6 1 0 0 0 0 0
..................................................................................................................................................................................................CAGCGTCGCATTCAAACAAAGATTT............................... 25 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................CTTTGCAAAGGCTGGTATACTTCAT........................................................................... 25 0 3 0.67 2 0 0 0 2 0 0 0
............................................................................................................................CAGCTTTTCATACATTGTCCATCTT..................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0 0
.......................TCCGAGTTGCTGGGTATACGAA............................................................................................................................................................................................................. 22 0 2 0.50 1 0 0 0 0 1 0 0
...................................................................................................................................................................................................CGCGTCGCTTTCAAACAAAGATTT............................... 24 2 2 0.50 1 0 0 1 0 0 0 0
.................CTCATATCCGAGCTG.......................................................................................................................................................................................................................... 15 1 2 0.50 1 1 0 0 0 0 0 0
..........................GAGTAGCTTGGTATACGATGTA.......................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0
................................................................................................ACGCGGAATGCCCAAATG........................................................................................................................................ 18 3 20 0.35 7 2 4 1 0 0 0 0
...................................................................................................................................TCATACATTGTCCATC....................................................................................................... 16 0 20 0.25 5 0 0 2 0 0 3 0
.........................................................................................................................................................................CTTCAACTAGTCCTAGTTACCGGCT........................................................ 25 3 5 0.20 1 0 1 0 0 0 0 0
............................................................................................................................................................................GCTAGAGTCCTAGTTATCGGCTCA...................................................... 24 3 13 0.15 2 0 0 0 2 0 0 0
...............................................................................................................................................................................ATAGTCCTAGTTATCGGCTCAGC.................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0
...................................................................................ACAATCAAAGAAAAGGGGCA................................................................................................................................................... 20 3 19 0.11 2 0 0 0 2 0 0 0
...................................................................................................................................TCATACATTGTCCATCTTCCTT................................................................................................. 22 0 20 0.10 2 0 0 1 0 0 1 0
.......................................................................................................................................................TTTGCTAAGGCAGCTATACT............................................................................... 20 3 11 0.09 1 0 1 0 0 0 0 0
............................................................................................................................................................................AATATAGTCCTAGTTCTCGTCTCAGC.................................................... 26 3 11 0.09 1 0 0 0 0 0 0 1
..............................................................................................................................................................AGGCTGGTATACATC............................................................................. 15 1 18 0.06 1 0 0 0 1 0 0 0
....................................................................................................GGAATGCCCAAATGAC...................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................GCGGAATGCCCAAAT......................................................................................................................................... 15 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:1008955-1009204 + dsi_25847 TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCATATGCTTCATTGGTAAGTTAAT--------ATCAT---TT-T---------AAAAACTT--AAAGT--------------------------AATGTTA--------------------GTTTATTATACCCGTTAC----------------GGG--TTTACTACTCAGCGAGTCGAAA-------AGTATGTAACAG-GTAGAAGGAAACGTTTCCGACCATATGAAGTATA-----------TCAGGATCAATAGCCGAGTCGC-----------------------------------------------------------------------------------------------------------AGCGCAAGTTTGTTTCTAAATTATGTCACCCCCACTCTTACGCCCATAAAC
droSec2 scaffold_40:274900-275149 + TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCATATGCTTCTTTGGTAAGTTAAT--------ATCAT---TA-T---------AAAAACTT--AAAAT--------------------------AATGTTA--------------------GTTTATTATACCCGTTAC----------------GGG--TTTACTACTCAACGAGTCGAAA-------AGTATGTAACAG-GTAGAAGGAAACGTTTCCGACCATATGAAGTATA-----------TCAGGATCAATAGCCGAGTCGC-----------------------------------------------------------------------------------------------------------AGCGCAAGTTTGTTTCTAAATGATGTCACCCCCACTCTTACGCCCATAAAC
dm3 chr4:1250915-1251143 + TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCATATGCTTCTTTGGTATGTTGAT--------ATCAT---TA-T---------AAAAACTG--AAATT--------------------------AATGTTA--------------------GTTTATTGTACCCGTTAC----------------GGG--TGTACT---AGATTCGTTAAAA-------AGTATGTAACAG-GTAGAAGGA-GCGTTTCCGACCATATGAAGTACATATCTGGTCGATCTGG----------------------CCATGTCCGTCTG--------TCCGTATGAACGCTTAGATCTCA---------------------------------------------------------------------------------------------------------GGAA
droEre2 scaffold_4929:16632179-16632390 - CT--------TC-----------------------CAC--AAGAATA--------------TCTT------------------------------------------------------------------------------------CATTTTCCATAGGGCCCACCATTAGGTGGAC--------TTCTT---TGAAACTAC---------GTT--ACCAC--------------------------AAGATTC--------------------GGGTATTATACCCGT------------------AGAG--TATACT---AGATTCGTTGAAA-------AGTATGTAACAG-GTGGAAGGAAGCGTTTCCGACCAT---------ATAAATTCTTGATCAGGATCAATAGCGGAGTCTCTCTGTCA----------GTCTCTCCGTCCATATG--------------------------------------------------------------------------------------------------------------------------AA
droYak3 3R:1335036-1335306 - CGCAGTATTTGT-----------------------CAT--TAGAGTGATAGCAAAGTATTTTCTT---CTTTTTT-------------------TAAGTATTAATCATTAT-----------------------------------------------------------------------------TTCT-ATT-AGA------------AA--T--AA---------------------ATTGATGCGT--------------AATTA------TGTAATTATACCCGTTACTGG-TA--GAGTAAAAGGG--TATACT---AGATTCGTTGAAA-------AGTATGTAACAGGGCAGAAGGAAGCGTTTCCGACCAT-TGAAGTATATATATTCTTGATCAGGACCAATAGCCGAGTCGAAATGACCATGTCCGTCTGTCTGTCCGTCCGTATGAACGTCG-----------------------------------------------------------------------------------------------------------------AGAT
droEug1 scf7180000407485:10812-11027 - CGCAAGTTT--A-----------------------TAA--CAGCATCCA------------GGCT-----------------------------------------------------------------------------------CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATATTCTTGATCAGTATCAATAGCGAAGTCGATTGTGCGATTTCCTTCTG--------TCCGTATGGACGCTGAGATCTCAGGAACTATAACAGATACAAAGTTCAGATTAACCATGAAGATTTTTGAGGTCCATACGCAGCGCACGTTTGTCTCAGCATCCTGCAACGCCCACTCTAACCCCCTCAAAT
droBia1 scf7180000301518:314836-315098 + CAGAAGTTT--G-----------------------CAT--AGCAGGAGA------------TGTA-----------------------------------------------------------------------------------TTCCACCCCATAAAGTAGATTAGATAGATA--------------------------GATTA--------CCAAAATCAAGTATTTCGAGCTTCAA-------------C--------------------TTTATTTATACCAGTTACTCG-TA--CAGTAAATGGG--GGTACT---AGGCTCGTCGGAA-------AGTATTTAACAG-ATAGGAGAAAGCGATTCTGACACTATAAAGTAAA--TATCCTTGGTCAGGTC-AA------------TGTAGCAATGTCCATCCA--------AAATTTTAAC-T-----------------------------------------------------------------------------------------GATTTTCTCATCAACTCCTA--TCAATAGAC
droTak1 scf7180000410826:9938-10155 + TCAG-CAATATA-------TATGCA--------TACTCGTTATAG--------------------------------------------------------------------------------------------------------GATAAGTTAAAAAT-------------------------------------------------------------------------G-TTCAG-------------A--------------------TATGTTTATACCCGTTACTCG-TA--GAGTAAAAGGC--TATATT---AGATTCGTGCAAA-------AGTATGTAACAG-CTAGAAGGAAGCGTTTCCGACCCTATAAACTATATATATTCTTGATCAGGATCAATAGCCGAGTCGAT-------------------------------------------------------------------------------------------------------------------------CAAAAGGGTGCCACGCCC-CTCTAACGCCCACAATC
droEle1 scf7180000490551:2051-2253 - TAAATA-TTTCA-----------------------TAT--CGAAATATT------------AATT------------------------------------------------------------------TATAAGTTACACTTGGTTAAGGATTTT----------------------------------------------GATTG--------CCAAAATAAA---------------------------CTA--------------------TTTTATTATACCAGCTACTCG-TA--GAGTAAAAAGG--TATCCT---GTATTCGTTGAAA-------AGTATGTAACAG-CTAAAAGGAAGCGTTTCCGACCATTTAAAGTATATATATTCTTGATCAGGATCAAAAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000761302:42139-42361 - TACGGGAATGTG-----------------------TAC--AAGA--AA------------------------GGCATATTCA------------------------------------------------------------------AAATTAGCCATATTCTATATTCTT--TTTATT--------ATTAT---TT-C---------AAAACCAC--ATTTC----------AAG-TTCAG--------------------------TT------TATAATTATACCCGTTACTCG-TA--GAGTAAAAGGG--TATATT---GTATTCGTGCAAA-------AGTATGTAACAG-CTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453435:51848-51902 + TACAAAACCTAA-----------------------CCT--TGGAGTACA------------GGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGATCCATACGCTTCTCTGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302351:194695-194900 + TATAAAATCTAA------------------------AG--C--A--ATA------------TCCT-----------------------------------------------------------------------------------TAATGATTTAAAAAA--CGTTCA--ATCTGA-ATTTGTAT-----AATAT-T---------AAAGACTTCTAAAAT---------------TAAATTAA--------T---------------------AATTTTTATACCCTTGC----------------AGGG--TATTAT---AATTTCAGTCAGA-------AGTTTGCAACGC-AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12895:25336-25512 + TTAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTTAAT--------ATCCA---TA-T---------AAAAA--T--ATTTT--------------------------AATATTTGTAATATCCAA----ATG--TTTTATTATACCCTTGAA----------------GAGGGTATTAT---AATTTTGGTCAAA-------AGTGTGCAACGC-AGTGAAGGAGACATTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000394985:51587-51761 - CACACTTTTCACGAATATAATAATA--------TCCTCTACAAG----------------------------GCTATA------------------------------------------------------------------------------------------------------------------------------------------T--ACAAT--------------------------AATATTT--------------------ACTTATTATACCCTTGCA----------------GAGGGTATTAT---AATTTTGTCCAAA-------AGTGTGCAACGC-AGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_346:1126-1419 + TGCAAAATCATA-----------------------C------GAGAAGA------------AGCT---------------CAAAATGTTGCGGCAGTAGGATTTT--TTATTTCATTTTGTAAAATTTATGTATAAG-----------------------------------------------------------------------------------------------------------------TT--------------TATTATATGTTGCTTATTATACCCGATACTCA-AAATGAGTATTGGGG--TATATT---AGATTTGTGGTAAAAGTGGATGTGTGTAACGT-CCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTG--------TCCGTCTGCCCC-----------------------------------------------------------------------------------------CGTTGCCCCGCCCACTTCCGCCCCCACAAAG
droPer2 scaffold_8011:294-503 - AACACATTCCTA-----------------------CCA--TGGCACATT------------GGGC-----------------------------------------------------------------------------------CAGCGACCCC-ATTTTTCGACGTTAATTCGA------------------------------AAAAATGC--ATGTC--------------------------AATGAAA--------------------CTTAATTATACCCGATACTCAATA-TGAGTATTGGGG--TATATT---AGATTTGTGGTAAA------A--GTGTAACGT-CCAGAAGGAAGCGTTTTCGACCCCATAAAGTATATACATTCTTGATCAGTATCAATAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:3942074-3942256 + CTCAATAACTCA-------GATGCGTCTTTCTCTCCTCTTTAAAG-----------------------------------------------------------------------------------------------------------------------------GT-----------------------------------------------AAACTAAA---------------------------GT---------------------ACTTTTTATACCCTTGCA----------------GAGGGTATTAC--AAAAATTGGTCAGA-------TGTTTGTAATGC-ACAGAAGGAAACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATGAAAAGCTGAGTCGAAG-----------------------------------------------------------------------------------------------------------------TTAGTTTCT----------------------------------
droVir3 scaffold_12891:31144-31348 + TATTAAATCGTT-----------------------CAG--CAGA--ATA------------TCCTAAACGGCGTT-------------------CAAAAGTTAAT--TTAT-----------------------------------------------------------------------------TTAA-CTT-ACT-------------------AAAAA------------------ATTGTTGGAT--------------TGTTATACA--TTTTTTTATACCATTGCA----------------GAGGGTAATAT---AATTTTGTCGTGA-------AATGTGTAACGC-ATAGAAGGAGACATCTCCGACCCCATCAAGTATATATATTCTTAATCAGCATCAACAGCCGGGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:13235976-13236112 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATACCCATTTTCAA-TG--GAAAATCAGGG--TTTAAT---GGTTTTGTTGAAA-------TGTATGTAACAG-GCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATATTATTGATCAGGGTGACGAGCTGAGTCAC-----------------------------------------------------------------------------------------------------------AGAGCAA--------------------------------------------
droGri2 scaffold_14853:2514554-2514701 - AACTTG-----G-AGCATTA---------------TTT--TTTTATATA------------TTCT-----------------------------------------------------------------------------------GAACAAGTTGAAAAT---------------------------------------------------------------------------------------------------------------G--TTTTTCTGCAAATTTG----------------------------------------------------CATATGTAACAG-ATAGAAGGAAGCATCTCCGACCCCATAAAGTGTATATATTATTGATCAAGATCAATAGGCGAGTCGATACAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCATATGCTTCATTGGTAAGTTAAT--------ATCAT---TT-T---------AAAAACTT--AAAGT--------------------------AATGTTA--------------------GTTTATTATACCCGTTAC----------------GGG--TTTACTACTCAGCGAGTCGAAA-------AGTATGTAACAG-GTAGAAGGAAACGTTTCCGACCATATGAAGTATA-----------TCAGGATCAATAGCCGAGTCGC-----------------------------------------------------------------------------------------------------------AGCGCAAGTTTGTTTCTAAATTATGTCACCCCCACTCTTACGCCCATAAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGAAA......................................................................................................................................................................................................................26118.0018000000000000162000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGA........................................................................................................................................................................................................................242014.5029000000040383231001589000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGAA.......................................................................................................................................................................................................................251811.612090000001334273601251000
TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.00400000012000100000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGG.........................................................................................................................................................................................................................23202.95590000000135121361000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGAAAT.....................................................................................................................................................................................................................2712.00200000000000020000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGAAAC.....................................................................................................................................................................................................................2712.00200000000000020000
..............................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAG-GTAGAAGGAAA......................................................................................................................................................................................................................2711.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGT........................................................................................................................................................................................................................24201.0020000000000100181000
.........TTA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000010000000
..........TA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGC-----------------------------------------------------------------------------------------------------------...................................................2030.67200002000000000000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAG..........................................................................................................................................................................................................................22200.601200000000103080000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGAAT......................................................................................................................................................................................................................26200.30600000012000003000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-G................................................................................................................................................................................................................................16200.30600000000006000000
..............................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAG-GTAGAAGGA........................................................................................................................................................................................................................25160.25400000000000040000
...........................................................................................................................................................................................................................................................................................................................................................TATGTAACAG-GTAGAAGG.........................................................................................................................................................................................................................18200.20400000000004000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTC................................................................................................................................................................20200.20400000000004000000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGT.........................................................................................................................................................................................................................23200.20400000000000022000
...........................................................................................................................................................................................................................................................................................................................................................TATGTAACAG-GTAGAA...........................................................................................................................................................................................................................16200.15300000000003000000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GT...............................................................................................................................................................................................................................17200.15300000000003000000
..............................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAG-GTAGAAGGAA.......................................................................................................................................................................................................................26150.13200000000000020000
...........................................................................................................................................................................................................................................................................................................................................................TATGTAACAG-GTAGAAGGA........................................................................................................................................................................................................................19200.10200000002000000000
................................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAG-GTAGAAG..........................................................................................................................................................................................................................21200.10200000000200000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTAACAG-GTAGAAGGAA.......................................................................................................................................................................................................................20200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CGC-----------------------------------------------------------------------------------------------------------AGCGCAAGTTTGTT.....................................17200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................TA-----------TCAGGATCAATAGC......................................................................................................................................................................16120.08100000000001000000
..............................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAG-GTAGAAGG.........................................................................................................................................................................................................................24170.06100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................TGTAACAG-GTAGAAGGAA.......................................................................................................................................................................................................................18200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCG...............................................................................................................................................................21200.05100000000000010000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGTT........................................................................................................................................................................................................................24200.05100000000000010000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGAG.......................................................................................................................................................................................................................25200.05100000000000010000
...............................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG-GTAGAAGGC........................................................................................................................................................................................................................24200.05100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CGC-----------------------------------------------------------------------------------------------------------AGCGCAAGTTTGT......................................16200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACAG-GTAGAAGGAA.......................................................................................................................................................................................................................23200.05100000001000000000
................................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAG-GTAGAAGG.........................................................................................................................................................................................................................22200.05100000000100000000
droSec2
TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCATATGCTTCTTTGGTAAGTTAAT--------ATCAT---TA-T---------AAAAACTT--AAAAT--------------------------AATGTTA--------------------GTTTATTATACCCGTTAC----------------GGG--TTTACTACTCAACGAGTCGAAA-------AGTATGTAACAG-GTAGAAGGAAACGTTTCCGACCATATGAAGTATA-----------TCAGGATCAATAGCCGAGTCGC-----------------------------------------------------------------------------------------------------------AGCGCAAGTTTGTTTCTAAATGATGTCACCCCCACTCTTACGCCCATAAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........TA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
dm3
TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCATATGCTTCTTTGGTATGTTGAT--------ATCAT---TA-T---------AAAAACTG--AAATT--------------------------AATGTTA--------------------GTTTATTGTACCCGTTAC----------------GGG--TGTACT---AGATTCGTTAAAA-------AGTATGTAACAG-GTAGAAGGA-GCGTTTCCGACCATATGAAGTACATATCTGGTCGATCTGG----------------------CCATGTCCGTCTG--------TCCGTATGAACGCTTAGATCTCA---------------------------------------------------------------------------------------------------------GGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAG-GTAGAAG..........................................................................................................................................................................................................................21201.35270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000030000000000000000000000000000000000000000000000000000000000000000000000001031100000000000000000001000000000000000000000100000000000001000000012000080000000000000000000000000110
................................................................................................................................................................................................................................................................................................................................................................................................GAAGTACATATCTGGTCGA....................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TATA------------GGCT-----------------------------------------------------------------------------------CAACGACCCATATGCTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATGAACGCTTAGATCTCA---------------------------------------------------------------------------------------------------------....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TACAGAATCTTA-----------------------CAC--TGGAGTATA------------GGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................TATGTAACAG-GTAGAAGGA-GCGTT..................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTG--------TCCGTATGAACG........................................................................................................................24201.00200000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020100021000000000000000000000000000000000000000000000000000000000000000000401000000401000000000000000200000000
..................................................................................................................................................................................................................................................................................................GTTAC----------------GGG--TGTACT---AGAG..............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTACATATCTGGTCGA....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------TCCGTATGAACGCTTAGATCTCA---------------------------------------------------------------------------------------------------------GG..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTG--------TCCGTATGAACG........................................................................................................................20200.80160000000000000000000000000000000000080000000000000010000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTG--------TCCGTATGAAC.........................................................................................................................21200.70140000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100001000000000000000000000000000000000000000000000000000040000000000000010101000000100000000000000000000200000
.............................................................................................................................................................................................................................................................................................................................................................................GA-GCGTTTCCGACCATATGA.....................................................................................................................................................................................................2030.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTG--------TCCGTATGAACGCT......................................................................................................................2430.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTGG----------------------CCATGTCCGTCTG--------TCCGTATG............................................................................................................................26120.6780000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000300000000
.................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACAG-GTAGAAGG.........................................................................................................................................................................................................................21200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000050000000000000001000000021000000000000000000000100000
droEre2
CT--------TC-----------------------CAC--AAGAATA--------------TCTT------------------------------------------------------------------------------------CATTTTCCATAGGGCCCACCATTAGGTGGAC--------TTCTT---TGAAACTAC---------GTT--ACCAC--------------------------AAGATTC--------------------GGGTATTATACCCGT------------------AGAG--TATACT---AGATTCGTTGAAA-------AGTATGTAACAG-GTGGAAGGAAGCGTTTCCGACCAT---------ATAAATTCTTGATCAGGATCAATAGCGGAGTCTCTCTGTCA----------GTCTCTCCGTCCATATG--------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................AACAG-GTGGAAGGAAGCGTTTC................................................................................................................................................................................................................2230.3310001000
................................................................................................................................................................................................................................................................................................................................................................AACAG-GTGGAAGGAAGCGTTTCCGAC............................................................................................................................................................................................................2630.3310000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCGGAGTC................................................................................................................................................................18170.0611000000
droYak3
CGCAGTATTTGT-----------------------CAT--TAGAGTGATAGCAAAGTATTTTCTT---CTTTTTT-------------------TAAGTATTAATCATTAT-----------------------------------------------------------------------------TTCT-ATT-AGA------------AA--T--AA---------------------ATTGATGCGT--------------AATTA------TGTAATTATACCCGTTACTGG-TA--GAGTAAAAGGG--TATACT---AGATTCGTTGAAA-------AGTATGTAACAGGGCAGAAGGAAGCGTTTCCGACCAT-TGAAGTATATATATTCTTGATCAGGACCAATAGCCGAGTCGAAATGACCATGTCCGTCTGTCTGTCCGTCCGTATGAACGTCG-----------------------------------------------------------------------------------------------------------------AGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGACCAATAGCC.....................................................................................................................................................................25200.45900900000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGTCGA..............................................................................................................................................................26200.15300300000000
.......................................................................................................................................................................................................................................................................................................TGG-TA--GAGTAAAAGGG--TATACT---AGATT.............................................................................................................................................................................................................................................................27200.15300300000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCTGTCCGTCCGTATGAA..........................................................................................................................28200.10202000000000
.......................................................................................................................................................................................................................................................................................................TGG-TA--GAGTAAAAGGG--TATAC......................................................................................................................................................................................................................................................................21200.10200200000000
......................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACCAT-T.......................................................................................................................................................................................................25200.05100000010000
.......................................................................................................................................................................................................................................................................................................TGG-TA--GAGTAAAAGGG--TATACT---..................................................................................................................................................................................................................................................................22200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACCAATAGCCGA...................................................................................................................................................................24200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACCAATAGCCGAGTCGA..............................................................................................................................................................29200.05101000000000
.......................................................................................................................................................................................................................................................................................................TGG-TA--GAGTAAAAGGG--TATACT---AGATC.............................................................................................................................................................................................................................................................27200.05100100000000
droEug1
CGCAAGTTT--A-----------------------TAA--CAGCATCCA------------GGCT-----------------------------------------------------------------------------------CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATATTCTTGATCAGTATCAATAGCGAAGTCGATTGTGCGATTTCCTTCTG--------TCCGTATGGACGCTGAGATCTCAGGAACTATAACAGATACAAAGTTCAGATTAACCATGAAGATTTTTGAGGTCCATACGCAGCGCACGTTTGTCTCAGCATCCTGCAACGCCCACTCTAACCCCCTCAAATSizeHit CountTotal NormTotal
No Reads
droBia1
CAGAAGTTT--G-----------------------CAT--AGCAGGAGA------------TGTA-----------------------------------------------------------------------------------TTCCACCCCATAAAGTAGATTAGATAGATA--------------------------GATTA--------CCAAAATCAAGTATTTCGAGCTTCAA-------------C--------------------TTTATTTATACCAGTTACTCG-TA--CAGTAAATGGG--GGTACT---AGGCTCGTCGGAA-------AGTATTTAACAG-ATAGGAGAAAGCGATTCTGACACTATAAAGTAAA--TATCCTTGGTCAGGTC-AA------------TGTAGCAATGTCCATCCA--------AAATTTTAAC-T-----------------------------------------------------------------------------------------GATTTTCTCATCAACTCCTA--TCAATAGACSizeHit CountTotal NormTotal
No Reads
droTak1
TCAG-CAATATA-------TATGCA--------TACTCGTTATAG--------------------------------------------------------------------------------------------------------GATAAGTTAAAAAT-------------------------------------------------------------------------G-TTCAG-------------A--------------------TATGTTTATACCCGTTACTCG-TA--GAGTAAAAGGC--TATATT---AGATTCGTGCAAA-------AGTATGTAACAG-CTAGAAGGAAGCGTTTCCGACCCTATAAACTATATATATTCTTGATCAGGATCAATAGCCGAGTCGAT-------------------------------------------------------------------------------------------------------------------------CAAAAGGGTGCCACGCCC-CTCTAACGCCCACAATCSizeHit CountTotal NormTotal
No Reads
droEle1
TAAATA-TTTCA-----------------------TAT--CGAAATATT------------AATT------------------------------------------------------------------TATAAGTTACACTTGGTTAAGGATTTT----------------------------------------------GATTG--------CCAAAATAAA---------------------------CTA--------------------TTTTATTATACCAGCTACTCG-TA--GAGTAAAAAGG--TATCCT---GTATTCGTTGAAA-------AGTATGTAACAG-CTAAAAGGAAGCGTTTCCGACCATTTAAAGTATATATATTCTTGATCAGGATCAAAAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TACGGGAATGTG-----------------------TAC--AAGA--AA------------------------GGCATATTCA------------------------------------------------------------------AAATTAGCCATATTCTATATTCTT--TTTATT--------ATTAT---TT-C---------AAAACCAC--ATTTC----------AAG-TTCAG--------------------------TT------TATAATTATACCCGTTACTCG-TA--GAGTAAAAGGG--TATATT---GTATTCGTGCAAA-------AGTATGTAACAG-CTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TACAAAACCTAA-----------------------CCT--TGGAGTACA------------GGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGATCCATACGCTTCTCTGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TATAAAATCTAA------------------------AG--C--A--ATA------------TCCT-----------------------------------------------------------------------------------TAATGATTTAAAAAA--CGTTCA--ATCTGA-ATTTGTAT-----AATAT-T---------AAAGACTTCTAAAAT---------------TAAATTAA--------T---------------------AATTTTTATACCCTTGC----------------AGGG--TATTAT---AATTTCAGTCAGA-------AGTTTGCAACGC-AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTTAAT--------ATCCA---TA-T---------AAAAA--T--ATTTT--------------------------AATATTTGTAATATCCAA----ATG--TTTTATTATACCCTTGAA----------------GAGGGTATTAT---AATTTTGGTCAAA-------AGTGTGCAACGC-AGTGAAGGAGACATTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................TTGGTCAAA-------AGTGTGCAACGC-.................................................................................................................................................................................................................................21200.60120000120
..............................................................................................................................................................................................................................................................TTTGTAATATCCAA----ATG--TTTTATTATA........................................................................................................................................................................................................................................................................................................2720.501100000
............................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCACCTC.......................................................................................................................................................................20200.408800000
................................................................................................................................................................................................................................................................................................................................................AA-------AGTGTGCAACGC-AGTGAAGGAGA......................................................................................................................................................................................................................25200.306006000
...........................................................................................................................................................................................................................................................................................................................................................TGTGCAACGC-AGTGAAGGAGACATTT.................................................................................................................................................................................................................26200.255101021
..............................................................................................................................................................................................................................................................................................................................................................GCAACGC-AGTGAAGGAGACAT...................................................................................................................................................................................................................21200.204400000
.............................................................................................................................................................................................................................................................................................................................................................TGCAACGC-AGTGAAGGAGA......................................................................................................................................................................................................................19200.102200000
...............................................................................................................................................................................................................................................................................................................................................................CAACGC-AGTGAAGGAGACATT..................................................................................................................................................................................................................21200.102100001
............................................................................................................................................................................................................................................................................................................................................................GTGCAACGC-AGTGAAGGAGACATTTC................................................................................................................................................................................................................26200.102000002
..............................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCACCTCC......................................................................................................................................................................19200.102002000
................................................................................................................................................................................................................................................................................................................................................................AACGC-AGTGAAGGAGACATTTCCGAC............................................................................................................................................................................................................26200.051010000
..............................................................................................................................................................................................................................................................................................................................................................GCAACGC-AGTGAAGGAGACATTTCCG..............................................................................................................................................................................................................26200.051000001
..................................................................................................................................................................................................................................................................................................TTGAA----------------GAGGGTATTAT---AATTTTGGT.........................................................................................................................................................................................................................................................25200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................TATATATATTCTTGATCAGGA..............................................................................................................................................................................21200.051000010
...............................................................................................................................................................................................................................................................................................................................TAT---AATTTTGGTCAAA-------AGTGTGCAAC....................................................................................................................................................................................................................................26200.051100000
.................................................................................................................................................................................................................................................................................................................................T---AATTTTGGTCAAA-------AGTGTG........................................................................................................................................................................................................................................20200.051000010
...............................................................................................................................................................................................................................................................................................................................................................CAACGC-AGTGAAGGAGACATTTCCGA.............................................................................................................................................................................................................26200.051010000
........................................................................................................................................................................................................................................................................................................................................................................TGAAGGAGACATTTCCGACCC..........................................................................................................................................................................................................21200.051000001
...................................................................................................................................................................................................................................................................................................TGAA----------------GAGGGTATTAT---AATTTTGGT.........................................................................................................................................................................................................................................................24200.051010000
.............................................................................................................................................................................................................................................................................................................................................................TGCAACGC-AGTGAAGGAGACATTTC................................................................................................................................................................................................................25200.051001000
droBip1
CACACTTTTCACGAATATAATAATA--------TCCTCTACAAG----------------------------GCTATA------------------------------------------------------------------------------------------------------------------------------------------T--ACAAT--------------------------AATATTT--------------------ACTTATTATACCCTTGCA----------------GAGGGTATTAT---AATTTTGTCCAAA-------AGTGTGCAACGC-AGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TGCAAAATCATA-----------------------C------GAGAAGA------------AGCT---------------CAAAATGTTGCGGCAGTAGGATTTT--TTATTTCATTTTGTAAAATTTATGTATAAG-----------------------------------------------------------------------------------------------------------------TT--------------TATTATATGTTGCTTATTATACCCGATACTCA-AAATGAGTATTGGGG--TATATT---AGATTTGTGGTAAAAGTGGATGTGTGTAACGT-CCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTG--------TCCGTCTGCCCC-----------------------------------------------------------------------------------------CGTTGCCCCGCCCACTTCCGCCCCCACAAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCG...............................................................................................................................................................2520108.40216802156120000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTC................................................................................................................................................................242076.8515370153700000000
..........................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTG........................................................................................................................................................................................................................................21201.703400004000300
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG............................................................................................................................................................................................................................................19201.503000000030000
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTC........................................................................................................................................................................................................................................23201.352700000027000
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATG............................................................................................................................................................................................................................................20200.951901000000090
...............................................................................................................................................................................................................................................................................................................................ATT---AGATTTGTGGTAAAAG..................................................................................................................................................................................................................................................19200.751500000000150
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCCCGCCCACTTCCGCCC........21200.651301300000000
...........................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTG........................................................................................................................................................................................................................................20200.601201200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTG--------TCCGTC..............................................................................................................................23200.601200000001200
..........................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCATA......................................................................................................................................................................................................23200.501001000000000
..............................................................................................................................................................................................................................................................................................................................TATT---AGATTTGTGGTAAAAGTGGA..............................................................................................................................................................................................................................................24200.4590000000090
...................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTG...........................................................................................................................................................25200.4080800000000
................................................................................................................................................................................................................................................................................................................................TT---AGATTTGTGGTAAAAGTGG...............................................................................................................................................................................................................................................21200.4080000008000
..........................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTG..........................................................................................................................................................................................................................................19200.3570000004030
............................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGA...................................................................................................................................................................24200.3570700000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTG--------TCCGTCTGC...........................................................................................................................2530.3310010000000
........................................................................................................................................................................................................................................................................................TATTATACCCGATACTCA-AAATGA......................................................................................................................................................................................................................................................................................24200.3060400000200
.........................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAA.....................................................................................................................................................................................................25200.2550050000000
.................................................................................................................................................................................................................................................................................................CGATACTCA-AAATGAGTATTGGGG--TA.........................................................................................................................................................................................................................................................................26200.2550500000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATAGCCGA...................................................................................................................................................................26200.2550500000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCCATGTCTGTCTG--------TC..................................................................................................................................21200.2040000000040
...................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGCA..............................................................................................................................................................................22200.2040400000000
...........................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCCATAAAG...................................................................................................................................................................................................25200.1530000000300
............................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTAACGT-.................................................................................................................................................................................................................................25200.1530300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCATGTCTGTCTG--------TC..................................................................................................................................20200.1530300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCC.....................................................................................................................................................................19200.1530000000300
................................................................................................................................................................................................................................................................................................................................TT---AGATTTGTGGTAAAAGTGGA..............................................................................................................................................................................................................................................22200.1530300000000
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGT...........................................................................................................................................................................................................................................21200.1530000000030
........................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCC.....................................................................................................................................................................26200.1530300000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTG--------TC..................................................................................................................................19200.1530010020000
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTG..........................................................................................................................................................................................................................................22200.1020000000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTG--------TCCGTCT.............................................................................................................................19200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGTGTAACG...................................................................................................................................................................................................................................29200.1020000000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTG--------TCCG................................................................................................................................20200.1020000002000
........................................................................................................................................................................................................................................................................................TATTATACCCGATACTCA-AAATG.......................................................................................................................................................................................................................................................................................23200.1020110000000
.................................................................................................................................................................................................................................................................................................................................................................ACGT-CCAGAAGGAATCGTTTCCGACCC..........................................................................................................................................................................................................27200.1020200000000
......................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGG...............................................................................................................................................................................................................................................18200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCCATGTCTGTCTG--------....................................................................................................................................19200.0510000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCC.......................................................................................................................................................19200.0510000010000
........................................................................................................................................................................................................................................................................................................................GG--TATATT---AGATTTGTGGTAA.....................................................................................................................................................................................................................................................21200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGAT.............................................................................................................................................................................................................................................19200.0510010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTG--------TCCGT...............................................................................................................................22200.0510000000100
................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATATA.............................................................................................................................................................................................26200.0510000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATA........................................................................................................................................................................20200.0510000000010
..............................................................................................................................................................................................................................................................................................................TGAGTATTGGGG--TATATT---AGATTTGTGG........................................................................................................................................................................................................................................................28200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCGACCCCATAAAGTATATATA...........................................................................................................................................................................................27200.0510100000000
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTG........................................................................................................................................................................................................................................23200.0510001000000
.......................................................................................................................................................................................................................................................................................................TCA-AAATGAGTATTGGGG--TAT........................................................................................................................................................................................................................................................................21200.0510000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCCAT.....................................................................................................................................................20200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGTAAC....................................................................................................................................................................................................................................21200.0510001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCATGTCTGTCTG--------....................................................................................................................................18200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTG--------TCCGTCTG............................................................................................................................24200.0510010000000
............................................................................................................................................................................................................................................................................................................AATGAGTATTGGGG--TATATT---AGA...............................................................................................................................................................................................................................................................23200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGCA..............................................................................................................................................................................20200.0510000000010
.........................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGT.........................................................................................................................................................................................................................................21200.0510010000000
......................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCCAT.......................................................................................................................................................................................................26200.0510000100000
.....................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATATATAT..........................................................................................................................................................................................24200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATATA.............................................................................................................................................................................................21200.0510000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATAGCCGAG..................................................................................................................................................................27200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCATG....................................................................................................................................................20200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGCC.......................................................................................................................................................20200.0510001000000
...........................................................................................................................................................................................................................................................................................................................................................TGTGTAACGT-CCAGAAGGAATCGTT..................................................................................................................................................................................................................25200.0510000000010
droPer2
AACACATTCCTA-----------------------CCA--TGGCACATT------------GGGC-----------------------------------------------------------------------------------CAGCGACCCC-ATTTTTCGACGTTAATTCGA------------------------------AAAAATGC--ATGTC--------------------------AATGAAA--------------------CTTAATTATACCCGATACTCAATA-TGAGTATTGGGG--TATATT---AGATTTGTGGTAAA------A--GTGTAACGT-CCAGAAGGAAGCGTTTTCGACCCCATAAAGTATATACATTCTTGATCAGTATCAATAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGTATCAATAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------25190.265050000
...............................................................................................................................................................................................................................................................................................................................................TAAA------A--GTGTAACGT-CCAGAAG..........................................................................................................................................................................................................................2140.251010000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGTATCAATAGCCGAGTC................................................................................................................................................................24190.214040000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGTATCAATAGCCGAGT.................................................................................................................................................................25170.183030000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGTATCAATAGCCGAGTC................................................................................................................................................................26170.122020000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGTATCAATAGCCGAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------27170.061010000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGTATCAATAGCCGAG..................................................................................................................................................................24190.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGTATCAATAGCCG....................................................................................................................................................................22190.051010000
......................................................................................................................................................................................................................................................................................................................GGGG--TATATT---AGATTTGTGGTAAA------A--GT.........................................................................................................................................................................................................................................27200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGTATCAATAGCCGAG..................................................................................................................................................................23200.051010000
...................................................................................................................................................................................................................................................................................................................ATTGGGG--TATATT---AGATTTGTGGTA......................................................................................................................................................................................................................................................25200.051001000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGTATCAATAGCCGA...................................................................................................................................................................21200.051010000
..............................................................................................................................................................................................................................................................................................................TGAGTATTGGGG--TATATT---A.................................................................................................................................................................................................................................................................19200.051010000
droWil2
CTCAATAACTCA-------GATGCGTCTTTCTCTCCTCTTTAAAG-----------------------------------------------------------------------------------------------------------------------------GT-----------------------------------------------AAACTAAA---------------------------GT---------------------ACTTTTTATACCCTTGCA----------------GAGGGTATTAC--AAAAATTGGTCAGA-------TGTTTGTAATGC-ACAGAAGGAAACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATGAAAAGCTGAGTCGAAG-----------------------------------------------------------------------------------------------------------------TTAGTTTCT----------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................TTGGTCAGA-------TGTTTGTAATGC-.................................................................................................................................................................................................................................21190.21422000
..............................................................................................................................................................................................................................................................................................................................................CAGA-------TGTTTGTAATGC-ACAGA............................................................................................................................................................................................................................21180.17302010
..........................................................................................................................................................................................................................................................................................................................................TGGTCAGA-------TGTTTGTAATGC-A................................................................................................................................................................................................................................21200.15301020
...........................................................................................................................................................................................................................................................................................................................................GGTCAGA-------TGTTTGTAATGC-AC...............................................................................................................................................................................................................................21170.12200002
.....................................................................................................................................................................................................................................................................................................................................AAAATTGGTCAGA-------TGTTTGTAATGC-ACA..............................................................................................................................................................................................................................28130.08101000
..........................................................................................................................................................................................................................................................................................................................................TGGTCAGA-------TGTTTGTAATGC-AC...............................................................................................................................................................................................................................22170.06100010
..........................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATGAAAAGCTGAGT.................................................................................................................................................................28190.05100010
.........................................................................................................................................................................................................................................................................................................................................TTGGTCAGA-------TGTTTGTAATGC-A................................................................................................................................................................................................................................22190.05100001
...........................................................................................................................................................................................................................................................................................................................................GGTCAGA-------TGTTTGTAATGC-A................................................................................................................................................................................................................................20200.05101000
..........................................................................................................................................................................................................................................................................................................................................TGGTCAGA-------TGTTTGTAATGC-.................................................................................................................................................................................................................................20200.05101000
.....................................................................................................................................................................................................................................................................................ACTTTTTATACCCTTGCA----------------GAGG............................................................................................................................................................................................................................................................................22200.05101000
.......................................................................................................................................................................................................................................................................................................................................AATTGGTCAGA-------TGTTTGTAAT....................................................................................................................................................................................................................................21200.05100010
...........................................................................................................................................................................................................................................................................................................................................GGTCAGA-------TGTTTGTAATG...................................................................................................................................................................................................................................18200.05110000
droVir3
TATTAAATCGTT-----------------------CAG--CAGA--ATA------------TCCTAAACGGCGTT-------------------CAAAAGTTAAT--TTAT-----------------------------------------------------------------------------TTAA-CTT-ACT-------------------AAAAA------------------ATTGTTGGAT--------------TGTTATACA--TTTTTTTATACCATTGCA----------------GAGGGTAATAT---AATTTTGTCGTGA-------AATGTGTAACGC-ATAGAAGGAGACATCTCCGACCCCATCAAGTATATATATTCTTAATCAGCATCAACAGCCGGGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................A-------AATGTGTAACGC-ATAGAAGGAGACATC..................................................................................................................................................................................................................28206.40128000000110100000000000000000108000800000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A-------AATGTGTAACGC-ATAGAAGGAGAC.....................................................................................................................................................................................................................25203.20640000000000003000000000000006100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A-------AATGTGTAACGC-ATAGAAG..........................................................................................................................................................................................................................20201.90380000000000000000000000000003400000004000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A-------AATGTGTAACGC-ATAGAAGGA........................................................................................................................................................................................................................22201.30260000000000000000000000000220000002000000200000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCC.....................................................................................................................................................................26200.9519000010000000000000003000000080070000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAG.......................................................................................................................................................................24200.5511000000000000000000000000400000000070000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GA-------AATGTGTAACGC-ATAGAAGGAGACA....................................................................................................................................................................................................................27200.408000000000000000000000000006000000000020000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A-------AATGTGTAACGC-ATAGAAGG.........................................................................................................................................................................................................................21200.306000000000000000000000000000000000000060000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAGCCG....................................................................................................................................................................26200.153000000000000000000000000010000000002000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ATGTGTAACGC-ATAGAAGGAGACATC..................................................................................................................................................................................................................26200.102000002000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TGTGTAACGC-ATAGAAGGAGACATCT.................................................................................................................................................................................................................26200.102000000000000000000000000000020000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACA........................................................................................................................................................................23200.102000000000000000000000000200000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TGTCGTGA-------AATGTGTAACGC-ATAGA............................................................................................................................................................................................................................25200.102000001000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACGC-ATAGAAGGAGACATCTCCGACC...........................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TTGTCGTGA-------AATGTGTAACGC-ATAGA............................................................................................................................................................................................................................26200.051000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GTGTAACGC-ATAGAAGGAGACATC..................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAG.......................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AATGTGTAACGC-ATAGAAGGAGACATC..................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACGC-ATAGAAGGAGACATCTCC...............................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CGC-ATAGAAGGAGACATCTCCGACCCC.........................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TGTAACGC-ATAGAAGGAGACATCTCCG..............................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GTGA-------AATGTGTAACGC-ATAGAAG..........................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CGC-ATAGAAGGAGACATCTCCGA.............................................................................................................................................................................................................23200.051000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GA-------AATGTGTAACGC-ATAGAAGGAGA......................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TCGTGA-------AATGTGTAACGC-ATAGAAGG.........................................................................................................................................................................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTAATCAGCATCAACA........................................................................................................................................................................28200.051000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GTAACGC-ATAGAAGGAGACATCTCC...............................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TGTGTAACGC-ATAGAAGGAGAC.....................................................................................................................................................................................................................22200.051000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TGTGTAACGC-ATAGAAGGAGACATC..................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GTGA-------AATGTGTAACGC-ATAGAAGGAG.......................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TAACGC-ATAGAAGGAGACATCTCCG..............................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATACCCATTTTCAA-TG--GAAAATCAGGG--TTTAAT---GGTTTTGTTGAAA-------TGTATGTAACAG-GCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATATTATTGATCAGGGTGACGAGCTGAGTCAC-----------------------------------------------------------------------------------------------------------AGAGCAA--------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................GTAACAG-GCAGAAGGAGGCG....................................................................................................................................................................................................................20200.153000003
..........................................................................................................................................................................................................................................................................................................................................................................AAGGAGGCGTGGCAGACCCC.........................................................................................................................................................................................................20200.051000010
.....................................................................................................................................................................................................................................................................................................TTCAA-TG--GAAAATCAGGG--T..........................................................................................................................................................................................................................................................................19200.051000001
................................................................................................................................................................................................................................................................................................................................................................AACAG-GCAGAAGGAGGCGT...................................................................................................................................................................................................................19200.051000010
..................................................................................................................................................................................................................................................................................................ATTTTCAA-TG--GAAAATCAGGG--T..........................................................................................................................................................................................................................................................................22200.051000001
droGri2
AACTTG-----G-AGCATTA---------------TTT--TTTTATATA------------TTCT-----------------------------------------------------------------------------------GAACAAGTTGAAAAT---------------------------------------------------------------------------------------------------------------G--TTTTTCTGCAAATTTG----------------------------------------------------CATATGTAACAG-ATAGAAGGAAGCATCTCCGACCCCATAAAGTGTATATATTATTGATCAAGATCAATAGGCGAGTCGATACAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:48 PM