ID:dsi_25817 |
Coordinate:3r:4452334-4452513 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -47.7 | -47.6 | -47.5 |
 |
 |
 |
exon [3r_4452201_4452333_+]; CDS [3r_4452201_4452333_+]; CDS [3r_4452514_4452677_+]; exon [3r_4452514_4452677_+]; intron [3r_4452334_4452513_+]
No Repeatable elements found
| ##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGTCGCGCCTCAAGGAGCTCTACCCATCCATGCCGGTGATCAACATTCGGGTGAGTTGGAAATGCAAATCGGGCAAATGCTAAAATCCGCAAATCGGCGAATCGAGGGCGGATCTGTGGCGTCCAAGTGCTGGCGCATGTTGGCATAAATTCGAAAACTAGATTCAACGCCATTATTCTACTACACTGAATGCGATTCCGATTCAATTTAACCTCGTCTATGTACCGCAGGCAATCACTCAAGATAAGCAAGATCTGAGGAACATGTACGAGTGCCCGGT **************************************************.((((((((((.((((..((((((....))....((((((...(((......)))..))))))..(((((((....((((((((....))))))))....((........))....)))))))............)))).)))).)))))))))).........................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
M025 embryo |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................................................................................TGAGGTACATGTAAGAGTGCG.... | 21 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| ..............................................................................................................................................................................................................TTTAACCTCGTCTATGTACCGC.................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| .....................ACCCATGCATGCCGGTGAT................................................................................................................................................................................................................................................ | 19 | 1 | 3 | 0.67 | 2 | 2 | 0 | 0 |
| ...................................................................................................................................................................................ACTACACTGAAGGCGGTT................................................................................... | 18 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 |
| ............................................ATTCGGGTGCGTTGG............................................................................................................................................................................................................................. | 15 | 1 | 8 | 0.13 | 1 | 1 | 0 | 0 |
| ..........................................................................................................................................GTTGGCCTAAATTCGAAGAG.......................................................................................................................... | 20 | 3 | 14 | 0.07 | 1 | 1 | 0 | 0 |
| .................................................................................................................................CTAGCTCATGTTGGCAT...................................................................................................................................... | 17 | 2 | 19 | 0.05 | 1 | 1 | 0 | 0 |
|
TCAGCGCGGAGTTCCTCGAGATGGGTAGGTACGGCCACTAGTTGTAAGCCCACTCAACCTTTACGTTTAGCCCGTTTACGATTTTAGGCGTTTAGCCGCTTAGCTCCCGCCTAGACACCGCAGGTTCACGACCGCGTACAACCGTATTTAAGCTTTTGATCTAAGTTGCGGTAATAAGATGATGTGACTTACGCTAAGGCTAAGTTAAATTGGAGCAGATACATGGCGTCCGTTAGTGAGTTCTATTCGTTCTAGACTCCTTGTACATGCTCACGGGCCA
**************************************************.((((((((((.((((..((((((....))....((((((...(((......)))..))))))..(((((((....((((((((....))))))))....((........))....)))))))............)))).)))).)))))))))).........................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................................................................TACATGTCGTCCGGTAATGAGT....................................... | 22 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..................AGAAGGGTAGGTACGG...................................................................................................................................................................................................................................................... | 16 | 1 | 4 | 0.25 | 1 | 0 | 1 | 0 |
| .........................................................................................................................................................................................................AAGTTGAATTGGAGC................................................................ | 15 | 1 | 12 | 0.17 | 2 | 0 | 2 | 0 |
| ...............................................................................................................................................................................AACATGATCTGACTTAC........................................................................................ | 17 | 2 | 13 | 0.08 | 1 | 0 | 0 | 1 |
Generated: 04/24/2015 at 08:03 AM