ID:

dsi_25780

 Coordinate:

x:10491457-10491606 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.8 -20.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTCGACGGAAAAGAGAAATTTGTGGTTTCCGAGGAATTTGGAGCAATATGTAAGTAGAACTACAAAATGTGCGTTAAGTTGTGTGCAAATTCGCTGCCAGCCTGGCCAATTCGCCATCGTGATGTGAATGAGTGCTCGTTCATGTGCGGCATGACGCCAGTGACGCCTCAAATCCGCATGCAATATGGACGACGGCGTCCCTTCGCCTGGAATTGTGTGCTTTATTCCCGGCCCGGCGGTTTCTGCTGC
**********************************************************************************************************************************..((..((((((((((...(((((.((....(((....)))....))))))).))))))))))..))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 M024
male body
...............................GAGGAATTTGGAGCAATATCT...................................................................................................................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...............GAAATTTGTGGTTTCCGAGGA...................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................ATATGTAAGTAGAACTAC.......................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................TTTGTGGTTTCCGAGGAATTTGG................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....ACGGAAAAGAGAAATTTGTGG................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..TCGACGGAAAAGAGAAATTTGTGGTTTC............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..TCGACGGAAAAGAGAAATTTGTGG................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................GAGTGCTCGTTCATGTGCGGC................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................AATTTGTGGTTTCCGAGGAATTTGGA............................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..TCGACGGAAAAGAGAAATTTGTGGT............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................TTGTGGTTTCCGAGGAATTTGGA............................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................ATTTGTGGTTTCCGAGGAA..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................TTGTGGTTTCCGAGGAATT................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
TTTCGACGGAAAAGAGAAATTTGTGGT............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................ATATGTAAGTAGAACT............................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGCAATATGGACGACGGC..................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................TTTGTGGTTTCCGAGGAATCTGG................................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................TTTGTGGTTTCCGAGGAATTTGGA............................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................AATTTGTTGTTTCCGAGAAAT.................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.TTCGACGGAAAAGAGAAATTTGTGGT............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................AATTTGGAGCAATATGTAAGTA................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................GTTTCCGAGGAATTTGGAGCAATATG....................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................AGCAATATGTAAGTAGAACT............................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................TCCGAGGAATTTGGAGCAATATCTCA.................................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........AAAAGAGAAATTTGTGGTTTCCGAGGA...................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................GTTTCCGAGGAATTTGG................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................ACAAAATGTGCGTTAAGTT......................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......CGGAAAAGAGAAATT..................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................GTGTGCTCGTGCATGTGGGGCA.................................................................................................. 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
................................AGGAATTTGGAGCTATA......................................................................................................................................................................................................... 17 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GTTCATGTGGGCCCTGACG............................................................................................. 19 3 12 0.17 2 0 0 0 0 1 0 0 0 0 0 0 1
...............................................................................................................................................................AGTGAGGCCTCAGATCTGC........................................................................ 19 3 13 0.15 2 1 0 0 0 0 0 0 0 0 0 0 1
................................AGGAATTTTGAGCAAT.......................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................GATTTGTCTGCTTTATTCC..................... 19 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
......................GAGGTTTCCGAGGAA..................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................TATGTAAGTGGAGCTAC.......................................................................................................................................................................................... 17 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
......................TTGGTTACCGAGGAATT................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................GGCCCGGCGGTCGCTG.... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AAAGCTGCCTTTTCTCTTTAAACACCAAAGGCTCCTTAAACCTCGTTATACATTCATCTTGATGTTTTACACGCAATTCAACACACGTTTAAGCGACGGTCGGACCGGTTAAGCGGTAGCACTACACTTACTCACGAGCAAGTACACGCCGTACTGCGGTCACTGCGGAGTTTAGGCGTACGTTATACCTGCTGCCGCAGGGAAGCGGACCTTAACACACGAAATAAGGGCCGGGCCGCCAAAGACGACG
*****************************************************..((..((((((((((...(((((.((....(((....)))....))))))).))))))))))..))********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.................TTAAACAACAAAGGCTCTTTAG................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0
.......................ACCAATGGCTCCTTA.................................................................................................................................................................................................................... 15 1 4 0.25 1 0 1 0
.....................................................................................................................................................AGTACTGCGGTCACT...................................................................................... 15 1 4 0.25 1 0 1 0
........................................................................................................................................AGCAAGTAGACGCCG................................................................................................... 15 1 13 0.08 1 0 0 1
.............................................................................................................................................................................................TGCGGCCGCACGGAAGAGG.......................................... 19 3 17 0.06 1 1 0 0
..................................................................................AGACGTTTGAGCGACGG....................................................................................................................................................... 17 2 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:10491407-10491656 - dsi_25780 TTTCGACGGAAAA-GAGAAATTTGTGGTTTCCGAGG--AATTTGGAG---------------------CAATATGTAAGTAGAACT----ACAAAATGTGCGTTAAGTTGTGTGCAAA------TTC-GCTGCCA-GCCTGGC---------------------------CAATTCGCCATCGTGAT---------GTGAAT-----------------GAGTGCTCGTTCATG--TGCGGCATG----ACGCCAG-TGACGCCTCAAATCCGCAT------------GCAATATGGA-------CGAC----------------GGCGTCCCTTCGCCTGGAATTGTGTGCTTTATT-CCCGGCCCGGCGGTTTCTGCTGC
droSec2 scaffold_15:1745922-1746170 - TTTCGAC--AAAAGAAGAAATTTGTGGTTTCCGAGG--AATTAAGAG---------------------CAATATGTAAGTAGAACT----ACAAAATGTGCGTTAAGTTGTGTGCAAA------TTC-GCTGCCA-ACCTGGC---------------------------CAATTCGCCATCGTGAT---------GTGAAT-----------------GAGTGCTCGTTCATG--TGCGGCATG----ACGCCAG-TGACGCCTCAAATCTGCAT------------GCAATATGGA-------CGAC----------------GGCGTCCCTTCGCCTGGAATTGTGTGCTATATT-CCCGGCCCGGCGGTTTCTGTTGC
dm3 chrX:11042326-11042566 - TTTCGGC--AAAA-AAGAAAGTTGTGGTTTTCTAGG--AATTTCGAG---------------------CAAAATGTAAGTAGAACT----ACAAAATGGGCTTTAAATTGTGTGCAAA------TTC-GCTGCCA-GCCTGGC---------------------------TAATTCGCCACCGTGAT---------GTGAAT-----------------AAGTGCT-------G--TGCGGCATG----ACGCCAG-TGACGCCCCAAATTCGCAT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCCTGGAATTGTGTGCTTTATT-CCCGACCCAGCGGCTTTTGCTGT
droEre2 scaffold_4690:4088201-4088447 + CTTCGGC--AAAA-AAGAAAGTTGTGATTTGCGAGG--AATCTCGAG---------------------CAACATGTAAGTAGAACC----ACAAAATGTGCGTTAAATTGTGTGCAAA------TTC-GCTGGCA-GCAATGC---------------------------CAATTGGGCACAGTGAT---------GTGAAT-----------------GAGTGCTGG-GCATG--TGTGGCATA----ATGCCAA-TGTCGCTCCAAATCCGCAT------------GCAATATGGA-------CGAC----------------GGCGTCACTTCGCTGGGAATTCTGTCGTTTATT-CCCGGGCCAGCGGCATTTGCTGC
droYak3 X:11084335-11084581 + CTTCGGC--AAAA-AAGAAAGTTGTGATTTGCGAGG--AATTTCGAG---------------------CAACATGTAAGTAGAACC----ACAAAATGTGCGTTAAATTGTGTGCAAA------TTC-GCTGGCA-GCATGGC---------------------------CAATGTGCCAGAGTAAT---------GTGAAT-----------------GAGTGCTGG-GCATA--TGCGGCATG----ACGCCAA-TGACGCCCCAAATCCGCGT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCTGGGAATTCTGCGGCTTATT-CCCGGGCCTGCGGCTTCTGCTGC
droEug1 scf7180000409631:172771-173018 - ------------A-AAGAAAGTTGTGATTTGCGAGG--AATTTAGA---------------CAGCGCACGTAAAGTAAGTAAATCCCGAATCGAAATATTCGTTTAATTGTTTGTGTGTGGAATAAGTACTGCCT-ACAAAGG---------------------------CACTTTTGCAATGTGAT---------TTGT-T-----------------GAGTGCTGG-CAATG--AGTGGAATT----TGCCCTT-CGACGCCTTTAACCCGGCT------------GCAATATGGT-------CGAC----------------GGCGTCGCTT-GCTATTAATTGTGCGGTTTGTC-TCGGCAAAACAT-GCT---TGGC
droBia1 scf7180000302126:4043249-4043481 - ------------A-AAGAAAGTTGTGAATTCCGAGGGAAATTTCCAG---------------------CA--ATGTAAGTAGTCCC-----CGAATTGTGCGTTCAATTGTGTGAAAA------TCGAATGGGCC-CCCCTGCCCT-GGGGCGCAGCG------------------TGCGGTGTGGC---TTGC----------CCTGCGATTCT----------------------------------CGCCCAGCCGAAGCCCCTGACCCGGTT------------GCAATATGGA-------CGACGAAGGCGGCAGCAGGCGGCGTCGCCTTGCTGCG----GCGTGCTT--TTCCGGGGAAATG----------GGC
droTak1 scf7180000415394:934396-934629 - CTGCGGC--AAG----AAAAGTTGTGAATTTCGAGGGGAATTTCGAG---------------------CAACATGTAAGTAGAGCT----------TGTGCGTTA-ATTGTGTGGAAA------AAGGACTGGCA-GC-TGGC---------------------------ATTTTAGCCAGAACAAG-------GTTTGT-TGGC-------------------CTCG-CAGGG--AGTGGAGGG----CCGCCTGTCGACGCCTCTGACCCGGTT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCTCGGAATTGTGTGGTTTGTT-CAGGGAAATTTGGCA-----TTT
droEle1 scf7180000490214:246002-246263 + ------------A-AAAAAAGTTTTGATTTTCGAGG--AAATTCGAGCGAGCAAATTTGAGCAG----CAACATGTAAGTAAACCCCGAGTCGATGTGTGCTTTATGTTGTGA--AAA------AGGTGCGTGGT-GCGTGGCCTTAGGGGTTTTGTG---------------TGTGACAAGGTGGT---------GT----------------TGCT--------------AGAGTGTA-AGTG---CTT-TCCT-CGACGCCTTTGACCCGGCTGCGGCTGCGGCCGCAATATGGA-------CGAC----------------GGCGTCGCTTCGC--GGTACTGTGTGGCTTATT-TTGGTAAATCTG------GCTTT
droRho1 scf7180000776532:266230-266484 + ------------A---AAAAGTTGTGGTTTTCGAGG--AAATTCGAGCAAGGAAATTCGAGCAG----CGAAATGTAAGTAAACCC-GAATCGAATTGTGCGTTGAATTGTGAGCAGA------GTG-GC--------CTAACTGT-GGG-GGCTGCGTGTTGCGTTGGACT-----CCAA-GTGTTCCGTTGG----------TCTGGGA----------------------C--TGTGGCAAGAGGTTC-TCCT-CGACGCCTTTGACCCGGCT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCTTGGGACAGTGTGGTTTATT-TCGGCGAATC----------TGC
droFic1 scf7180000453882:1001653-1001884 - ------------A-GCGAGGTTTTTAGGAATCGAGG--AATT-CGAG--------------CCG----CAGCAAGTGAGTAA--TC----CCGAAATGTGTGCCAAATTGTGTAGAAA------ATGGACTGATCCTGCTGGC---------------------------CTCTTTGCCAA-GTGG-------------AAT------------TAGTCTAGTAG--------G--CGCCGAAAT----TCGCCAC-CGCC-TTTTTGACCCGGTT------------GCAATATGGAAGACAGGCGAT----------------GGCGTCGCTTCGCTTGGAAATGTGCGGCTTATA-TCGAGGAATTC------GCTTGC
droKik1 scf7180000302724:224926-224958 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCTCA-------GC------------GCAATATGGA-------CGAC----------------GGCGTCGCTT-----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTCGACGGAAAA-GAGAAATTTGTGGTTTCCGAGG--AATTTGGAG---------------------CAATATGTAAGTAGAACT----ACAAAATGTGCGTTAAGTTGTGTGCAAA------TTC-GCTGCCA-GCCTGGC---------------------------CAATTCGCCATCGTGAT---------GTGAAT-----------------GAGTGCTCGTTCATG--TGCGGCATG----ACGCCAG-TGACGCCTCAAATCCGCAT------------GCAATATGGA-------CGAC----------------GGCGTCCCTTCGCCTGGAATTGTGTGCTTTATT-CCCGGCCCGGCGGTTTCTGCTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................GAAATTTGTGGTTTCCGAGG--A.......................................................................................................................................................................................................................................................................................................................................................2112.00200020000000000000
......................................................................ATATGTAAGTAGAACT----AC..................................................................................................................................................................................................................................................................................................1812.00200200000000000000
....................TTTGTGGTTTCCGAGG--AATTTGG.................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.....ACGGAAAA-GAGAAATTTGTGG...................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
..TCGACGGAAAA-GAGAAATTTGTGGTTTC...............................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
..TCGACGGAAAA-GAGAAATTTGTGG...................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...........................................................................................................................................................................................................................GAGTGCTCGTTCATG--TGCGGC............................................................................................................................................2111.00100100000000000000
..................AATTTGTGGTTTCCGAGG--AATTTGGA................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..TCGACGGAAAA-GAGAAATTTGTGGT..................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.....................TTGTGGTTTCCGAGG--AATTTGGA................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...................ATTTGTGGTTTCCGAGG--AA......................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.....................TTGTGGTTTCCGAGG--AATT....................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
TTTCGACGGAAAA-GAGAAATTTGTGGT..................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................ATATGTAAGTAGAACT----....................................................................................................................................................................................................................................................................................................1611.00100000001000000000
...................................................................................................................................................................................................................................................................................T------------GCAATATGGA-------CGAC----------------GGC......................................................1811.00100000000001000000
....................TTTGTGGTTTCCGAGG--AATTTGGA................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.TTCGACGGAAAA-GAGAAATTTGTGGT..................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
......................................AATTTGGAG---------------------CAATATGTAAGTA.............................................................................................................................................................................................................................................................................................................2211.00100000000001000000
..........................GTTTCCGAGG--AATTTGGAG---------------------CAATATG...................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.............................................AG---------------------CAATATGTAAGTAGAACT----....................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........AAAA-GAGAAATTTGTGGTTTCCGAGG--A.......................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..........................GTTTCCGAGG--AATTTGG.................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..........................................................................................ACAAAATGTGCGTTAAGTT.................................................................................................................................................................................................................................................................................1911.00100000000001000000
......CGGAAAA-GAGAAATT........................................................................................................................................................................................................................................................................................................................................................................1520.50100000001000000000
droSec2
TTTCGAC--AAAAGAAGAAATTTGTGGTTTCCGAGG--AATTAAGAG---------------------CAATATGTAAGTAGAACT----ACAAAATGTGCGTTAAGTTGTGTGCAAA------TTC-GCTGCCA-ACCTGGC---------------------------CAATTCGCCATCGTGAT---------GTGAAT-----------------GAGTGCTCGTTCATG--TGCGGCATG----ACGCCAG-TGACGCCTCAAATCTGCAT------------GCAATATGGA-------CGAC----------------GGCGTCCCTTCGCCTGGAATTGTGTGCTATATT-CCCGGCCCGGCGGTTTCTGTTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................AATTTGTGGTTTCCGAGG--A.......................................................................................................................................................................................................................................................................................................................................................1915.0050230
...................ATTTGTGGTTTCCGAGG--AA......................................................................................................................................................................................................................................................................................................................................................1915.0051040
..................AATTTGTGGTTTCCGAGG--AATTAAGA................................................................................................................................................................................................................................................................................................................................................2611.0010010
....................................................................................................................................................................................TCGTGAT---------GTGAAT-----------------GAGTGCTC...........................................................................................................................................................2111.0010100
.......................GTGGTTTCCGAGG--AATTAAGA................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................................................................................................................................................................................................................TATGGA-------CGAC----------------GGCGTCCCTTCGCC...........................................2411.0010010
..........AAAGAAGAAATTTGTGGTT.................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....GAC--AAAAGAAGAAATTTGTGGTTTC...............................................................................................................................................................................................................................................................................................................................................................2511.0011000
..........................GTTTCCGAGG--AATTAAGAG---------------------..........................................................................................................................................................................................................................................................................................................................1911.0011000
.........AAAAGAAGAAATTTGTGGTTTCC..............................................................................................................................................................................................................................................................................................................................................................2311.0010010
..................AATTTGTGGTTTCCGAGG--AATT....................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................ATTTGTGGTTTCCGAGG--AATTAAG.................................................................................................................................................................................................................................................................................................................................................2411.0010100
.......................GTGGTTTCCGAGG--AATTAAGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2311.0010100
..........................................AAGAG---------------------CAATATGTAAGTA.............................................................................................................................................................................................................................................................................................................1811.0010001
..................................................................................................................................................................................CATCGTGAT---------GTGAAT-----------------GAGTG..............................................................................................................................................................2011.0010100
.....................TTGTGGTTTCCGAGG--AATTAAGA................................................................................................................................................................................................................................................................................................................................................2311.0011000
............................TTCCGAGG--AATTAAGAG---------------------CA........................................................................................................................................................................................................................................................................................................................1911.0010010
.........................GGTTTCCGAGG--AATTAAGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2111.0010010
..................AATTTGTGGTTTCCGAGG--........................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
TTTCGGC--AAAA-AAGAAAGTTGTGGTTTTCTAGG--AATTTCGAG---------------------CAAAATGTAAGTAGAACT----ACAAAATGGGCTTTAAATTGTGTGCAAA------TTC-GCTGCCA-GCCTGGC---------------------------TAATTCGCCACCGTGAT---------GTGAAT-----------------AAGTGCT-------G--TGCGGCATG----ACGCCAG-TGACGCCCCAAATTCGCAT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCCTGGAATTGTGTGCTTTATT-CCCGACCCAGCGGCTTTTGCTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..........AAA-AAGAAAGTTGTGGTTTT...............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AAGTTGTGGTTTTCTAGG--AATTTCGAG---------------------..........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............A-AAGAAAGTTGTGGTTTTCTAGG--A.......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................AATGGGCTTTAAATTGTGTGC...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................AGTTGTGGTTTTCTAGG--AATTT...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CGCTTCGCCTGGAATTGTG.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTCGGC--AAAA-AAGAAAGTTGTG....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................TGTGGTTTTCTAGG--AATT....................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGAAAGTTGTGGTTTTCTA............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......C--AAAA-AAGAAAGTTGTGGT..................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................AATGTAAGTAGAACT----ACAAAATGGGC.........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAAA-AAGAAAGTTGTGGTTTTCTAGG--AA......................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGGTTTTCTAGG--AATTTCGAA---------------------..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..TCGGC--AAAA-AAGAAAGTTGTG....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GCT-------G--TGCGGCATG----ACGCCAG-T............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................GCCACCGTGAT---------GTGAAT-----------------AAG................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TGTAAGTAGAACT----ACAAAATG............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GTGAT---------GTGAAT-----------------AAGTGCT-------G--TG................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTTGTGGTTTTCTAGG--AATTTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TCGCCTGGAATTGTGTGCT.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
....GGC--AAAA-AAGAAAGTTG......................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CCAG-TGACGCCCCAAATTCGC............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTGGTTTTCTAGG--AATTTCGAG---------------------CAAAA.....................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AAA-AAGAAAGTTGTGGTTTTCTAGG--A.......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GAAAGTTGTGGTTTTCTAGG--A.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTTGTGGTTTTCTAGG--AATTTCGAG---------------------CT........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................ATGGGCTTTAAATTGTGTGCA..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................TGTGGTTTTCTAGG--AATTT...................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..TCGGC--AAAA-AAGAAAGTTG......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTTTCTAGG--AATTTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTTTCTAGG--AATTTCGAG---------------------..........................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................TCTAGG--AATTTCGAG---------------------CAG.......................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droEre2
CTTCGGC--AAAA-AAGAAAGTTGTGATTTGCGAGG--AATCTCGAG---------------------CAACATGTAAGTAGAACC----ACAAAATGTGCGTTAAATTGTGTGCAAA------TTC-GCTGGCA-GCAATGC---------------------------CAATTGGGCACAGTGAT---------GTGAAT-----------------GAGTGCTGG-GCATG--TGTGGCATA----ATGCCAA-TGTCGCTCCAAATCCGCAT------------GCAATATGGA-------CGAC----------------GGCGTCACTTCGCTGGGAATTCTGTCGTTTATT-CCCGGGCCAGCGGCATTTGCTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GATTTGCGAGG--AATCTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2113.0032000010
......................TGTGATTTGCGAGG--AATCTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2412.0022000000
........................................TCTCGAG---------------------CAACATGTAAG...............................................................................................................................................................................................................................................................................................................1811.0010000010
...........................TTTGCGAGG--AATCTCGAG---------------------..........................................................................................................................................................................................................................................................................................................................1811.0011000000
............................TTGCGAGG--AATCTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................1811.0011000000
...........................................CGAG---------------------CAACATGTAAGTAG............................................................................................................................................................................................................................................................................................................1811.0010000010
....................GTTGTGATTTGCGAGG--AATCTCG.................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.................AAAGTTGTGATTTGCGAGG--AATC....................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..........AAA-AAGAAAGTTGTGATTTGCGAGG--........................................................................................................................................................................................................................................................................................................................................................2511.0010100000
...CGGC--AAAA-AAGAAAGTTGT.....................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
......................TGTGATTTGCGAGG--AATCTCG.................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................ATTTGCGAGG--AATCTCGAG---------------------..........................................................................................................................................................................................................................................................................................................................1911.0010000010
........................................................................ATGTAAGTAGAACC----ACAAAATGTGC.........................................................................................................................................................................................................................................................................................2511.0010000010
droYak3
CTTCGGC--AAAA-AAGAAAGTTGTGATTTGCGAGG--AATTTCGAG---------------------CAACATGTAAGTAGAACC----ACAAAATGTGCGTTAAATTGTGTGCAAA------TTC-GCTGGCA-GCATGGC---------------------------CAATGTGCCAGAGTAAT---------GTGAAT-----------------GAGTGCTGG-GCATA--TGCGGCATG----ACGCCAA-TGACGCCCCAAATCCGCGT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCTGGGAATTCTGCGGCTTATT-CCCGGGCCTGCGGCTTCTGCTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................GATTTGCGAGG--AATTTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2114.00402200000000
....................GTTGTGATTTGCGAGG--AATTTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2612.00200200000000
.....GC--AAAA-AAGAAAGTTGTGATTTGC..............................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.................AAAGTTGTGATTTGCGAGG--AA......................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....GGC--AAAA-AAGAAAGTTGTGATTT................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.TTCGGC--AAAA-AAGAAAGTT.......................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........AAAA-AAGAAAGTTGTGATTTGCGAGG--........................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
............A-AAGAAAGTTGTGATTTGCGAG...........................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................TGTGATTTGCGAGG--AATTTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2411.00100100000000
......................................................................ACATGTAAGTAGAACC----ACAAAAT.............................................................................................................................................................................................................................................................................................2311.00110000000000
.................AAAGTTGTGATTTGCGAGG--AATTTCGAG---------------------C.........................................................................................................................................................................................................................................................................................................................2911.00100100000000
.........AAAA-AAGAAAGTTGTGATTT................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
...............AGAAAGTTGTGATTTGCGA............................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
....................GTTGTGATTTGCGAGG--AAT.....................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......C--AAAA-AAGAAAGTTGTGATTTGC..............................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
....................................................................CAACATGTAAGTAGAACC----....................................................................................................................................................................................................................................................................................................1811.00110000000000
..........AAA-AAGAAAGTTGTGATTTGCGAGG--........................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
------------A-AAGAAAGTTGTGATTTGCGAGG--AATTTAGA---------------CAGCGCACGTAAAGTAAGTAAATCCCGAATCGAAATATTCGTTTAATTGTTTGTGTGTGGAATAAGTACTGCCT-ACAAAGG---------------------------CACTTTTGCAATGTGAT---------TTGT-T-----------------GAGTGCTGG-CAATG--AGTGGAATT----TGCCCTT-CGACGCCTTTAACCCGGCT------------GCAATATGGT-------CGAC----------------GGCGTCGCTT-GCTATTAATTGTGCGGTTTGTC-TCGGCAAAACAT-GCT---TGGCSizeHit CountTotal NormTotal
No Reads
droBia1
------------A-AAGAAAGTTGTGAATTCCGAGGGAAATTTCCAG---------------------CA--ATGTAAGTAGTCCC-----CGAATTGTGCGTTCAATTGTGTGAAAA------TCGAATGGGCC-CCCCTGCCCT-GGGGCGCAGCG------------------TGCGGTGTGGC---TTGC----------CCTGCGATTCT----------------------------------CGCCCAGCCGAAGCCCCTGACCCGGTT------------GCAATATGGA-------CGACGAAGGCGGCAGCAGGCGGCGTCGCCTTGCTGCG----GCGTGCTT--TTCCGGGGAAATG----------GGCSizeHit CountTotal NormTotal
No Reads
droTak1
CTGCGGC--AAG----AAAAGTTGTGAATTTCGAGGGGAATTTCGAG---------------------CAACATGTAAGTAGAGCT----------TGTGCGTTA-ATTGTGTGGAAA------AAGGACTGGCA-GC-TGGC---------------------------ATTTTAGCCAGAACAAG-------GTTTGT-TGGC-------------------CTCG-CAGGG--AGTGGAGGG----CCGCCTGTCGACGCCTCTGACCCGGTT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCTCGGAATTGTGTGGTTTGTT-CAGGGAAATTTGGCA-----TTTSizeHit CountTotal NormTotal
No Reads
droEle1
------------A-AAAAAAGTTTTGATTTTCGAGG--AAATTCGAGCGAGCAAATTTGAGCAG----CAACATGTAAGTAAACCCCGAGTCGATGTGTGCTTTATGTTGTGA--AAA------AGGTGCGTGGT-GCGTGGCCTTAGGGGTTTTGTG---------------TGTGACAAGGTGGT---------GT----------------TGCT--------------AGAGTGTA-AGTG---CTT-TCCT-CGACGCCTTTGACCCGGCTGCGGCTGCGGCCGCAATATGGA-------CGAC----------------GGCGTCGCTTCGC--GGTACTGTGTGGCTTATT-TTGGTAAATCTG------GCTTTSizeHit CountTotal NormTotal
No Reads
droRho1
------------A---AAAAGTTGTGGTTTTCGAGG--AAATTCGAGCAAGGAAATTCGAGCAG----CGAAATGTAAGTAAACCC-GAATCGAATTGTGCGTTGAATTGTGAGCAGA------GTG-GC--------CTAACTGT-GGG-GGCTGCGTGTTGCGTTGGACT-----CCAA-GTGTTCCGTTGG----------TCTGGGA----------------------C--TGTGGCAAGAGGTTC-TCCT-CGACGCCTTTGACCCGGCT------------GCAATATGGA-------CGAC----------------GGCGTCGCTTCGCTTGGGACAGTGTGGTTTATT-TCGGCGAATC----------TGCSizeHit CountTotal NormTotal
No Reads
droFic1
------------A-GCGAGGTTTTTAGGAATCGAGG--AATT-CGAG--------------CCG----CAGCAAGTGAGTAA--TC----CCGAAATGTGTGCCAAATTGTGTAGAAA------ATGGACTGATCCTGCTGGC---------------------------CTCTTTGCCAA-GTGG-------------AAT------------TAGTCTAGTAG--------G--CGCCGAAAT----TCGCCAC-CGCC-TTTTTGACCCGGTT------------GCAATATGGAAGACAGGCGAT----------------GGCGTCGCTTCGCTTGGAAATGTGCGGCTTATA-TCGAGGAATTC------GCTTGCSizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCTCA-------GC------------GCAATATGGA-------CGAC----------------GGCGTCGCTT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 06:54 PM