ID:

dsi_25754

 Coordinate:

2r:14063624-14063869 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.3 -42.0 -42.0

Flybase annnotation

exon [2r_14063870_14064100_-]; CDS [2r_14063870_14064100_-]; exon [2r_14063561_14063623_-]; CDS [2r_14063561_14063623_-]; intron [2r_14063624_14063869_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCCCAGCTTGCAGTTGATTTCTTAATTTCCTAGACCAGACGACTTGTATGTGGCGGATGAATGTGCTATTAGCTCCGCCATGTGGGAACTGGTTAATTGCTTGAACCAAGCTCCAGTTAAAATGATTATCGTTTCTGCTGCATACAAGTCGCTAATTTGATTTCATTTATTATTTATTTAATTTGTTTTATCTTCTTTTCATTTACTTCTGTTCTGTTTGCTCTCGAATGTAAATCGAATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
*****************************************************************************************....((((((((((((((((((.......(((...)))(((((...)))))((((((......(((((...))))).))))))..(((((...)))))))))))))))))))))))..******************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.........................................................................................CAGACGACTTGTATGTA................................................................................................................................................................................................................................................ 17 1 1 66.00 66 66 0 0 0 0 0 0 0 0 0
.........................................................................................CAGACGACTTGTATG.................................................................................................................................................................................................................................................. 15 0 1 20.00 20 20 0 0 0 0 0 0 0 0 0
...........................................................................................GACGACTTGTATGTA................................................................................................................................................................................................................................................ 15 1 5 16.00 80 80 0 0 0 0 0 0 0 0 0
........................................................................................GCAGACGACTTGTATGTA................................................................................................................................................................................................................................................ 18 2 1 13.00 13 13 0 0 0 0 0 0 0 0 0
.........................................................................................CAGACGACTTGTATGTAT............................................................................................................................................................................................................................................... 18 2 3 6.67 20 20 0 0 0 0 0 0 0 0 0
.........................................................................................CAGACGACTTGTATGT................................................................................................................................................................................................................................................. 16 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..........................................................................................AGACGACTTGTATGTA................................................................................................................................................................................................................................................ 16 1 2 4.50 9 9 0 0 0 0 0 0 0 0 0
.....................CAATGTTGAGTCGAAGGC................................................................................................................................................................................................................................................................................................................... 18 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0
........................................................................................GCAGACGACTTGTATGT................................................................................................................................................................................................................................................. 17 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................CAGACGACTTGTATGTATG.............................................................................................................................................................................................................................................. 19 3 19 1.26 24 24 0 0 0 0 0 0 0 0 0
.......................................................................................TGCAGACGACTTGTATGTA................................................................................................................................................................................................................................................ 19 3 18 1.17 21 21 0 0 0 0 0 0 0 0 0
......................AATGTTGAGTCGAAGGC................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TATTGCTTGAACCAAGCTCCAGTTAAAAT......................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............GAAAAGACCAATGTTGAGTCGAAGGC................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................GAAGGCGGACGAGAGAGGC...................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................CTGCTGCATACAAGTCGCT........................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................AGACGACTTGTATGT................................................................................................................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................ATTTTGTCGCTGCGGGTC............................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................GTCGAAGGCGGACGAGAGAGGC...................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................CTAGACCAGACGACTTGTATGTG................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................ATTTCCTAGACCAGAGG........................................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GCTCTCGACTGTTAATCGA...................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................CAGACGACTTGAATG.................................................................................................................................................................................................................................................. 15 1 8 0.38 3 0 0 0 0 2 0 0 0 1 0
................................................................................................................................................GGAGAATTGCTTGAACCCAG...................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................ATTTGTTTTATCTTC................................................................................................. 15 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................ATTTGTTTTATCGTCTTT.............................................................................................. 18 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................AGACGACTTGTATGTAT............................................................................................................................................................................................................................................... 17 2 14 0.14 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GGTAGAACAAGTAACTGGGG............. 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................TGCAGACGACTTGTATG.................................................................................................................................................................................................................................................. 17 2 15 0.13 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CTCTCGACTGTTAATCGA...................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................CAAGCTCCAGTTGAAAGG........................................................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................ATTTGTTTTATCTTCG................................................................................................ 16 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0
.........................................................................................CAGACGACTTAGATGTG................................................................................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 0 0 1 0
........................................GACGCGAGAGGTGTGCC................................................................................................................................................................................................................................................................................................. 17 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GTTCTGATTGCTCTC................................................................... 15 1 15 0.07 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................AATGTTAACCGAATAGG................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0
...................................AGGCGGCGGAGCGAGGTTT.................................................................................................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................TTCTGTTTTGTTGGCTCTCGT................................................................. 21 3 19 0.05 1 0 0 0 0 0 0 0 0 1 0
........................................................................................GCAGACGACTTGTATGTAT............................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................ATGTAAATCGAATTGGAG............................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGCGGTCCGATTTCTTTTCTGGTTACAACTCAGCTTCCGCCTGCTCTCTCCAAACGGGTCGAACGTCAACTAAAGAATTAAAGGATCTGGTCTGCTGAACATACACCGCCTACTTACACGATAATCGAGGCGGTACACCCTTGACCAATTAACGAACTTGGTTCGAGGTCAATTTTACTAATAGCAAAGACGACGTATGTTCAGCGATTAAACTAAAGTAAATAATAAATAAATTAAACAAAATAGAAGAAAAGTAAATGAAGACAAGACAAACGAGAGCTTACATTTAGCTTATCCGCTAAAACAGCGACGCCCAGCTGGTTCATTGACCCTTGTCTCGGCGGCC
*******************************************************************************************************************************************....((((((((((((((((((.......(((...)))(((((...)))))((((((......(((((...))))).))))))..(((((...)))))))))))))))))))))))..***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 O002
Head
.........................................................................................GTCTGCTGAACATACAT................................................................................................................................................................................................................................................ 17 1 1 2.00 2 2 0 0 0 0
.........................................................................................................CCGCCTACTTACACGATAATCGAGG........................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................ATGGTTCGAGGTCAATTT........................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0
............................................TCAGTCCGAACGGGTCGAACG......................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0
.......................................................................................................................................................................................GCAAAGATGACGCATGT.................................................................................................................................................. 17 2 7 0.14 1 0 0 0 1 0
..............................................................................................................................................................TGGTTCGATGTCAATTCCA......................................................................................................................................................................... 19 3 14 0.14 2 0 2 0 0 0
..............................................................................................................................................................................................................................TAATAAAGAAATTAAACA.......................................................................................................... 18 1 8 0.13 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14063574-14063919 - dsi_25754 GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------ATTTCCTA---------------GACCAGA--CGACTTGTATGTGGCGG-----A-TGAATGTGCTATTAGCTCCGCCATGTG------GGAACTGGTTA---------------------------------A------------------TTGCTTGAA------CCAAGCT-CC--AGTT-----------------------------------------AAAATGATTATCGTT--TCTGCTGCATACAAGTCGCTAATTTGATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GTT--------CT--GTTTGC-------TCTCGAAT--GTA-AATC---GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droSec2 scaffold_1:10915638-10915984 - GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCCC-------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------ATTTCCTA---------------GAGAAGA--CGACTTGTATGTGGCGG-----A-TGAATGTGCTATTAGCTCCGCCATGTG------GGAACTAGTTA---------------------------------A------------------TTGCTTGAA------CCAAGCT-CC--AGTT-----------------------------------------AAAATGATTATCGTT--TCTGCTGCATACAAGTCGCTAATTTGATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GTT--------CT--GTTTGC-------TCTCGAAT--GTA-AATC---GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
dm3 chr2R:13415831-13416176 - GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------ATTTCCTA---------------GACAAGA--CGACTTGTATGTGGCGG-----A-TGAATGTGCTATTAGCTCCGCCATGTG------GGAACTGGTTA---------------------------------A------------------TTGCTTGAA------TCAAGCT-CC--AGTT-----------------------------------------AAAATGATTATCGTT--TCTGCTGCATACAAGTCACTAATTTGATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GTT--------TT--GTTTGT-------TCTCGAAT--GTA-AATC---GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droEre2 scaffold_4845:7643119-7643468 - GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------TTTTCTTA---------------GAC-------GACTTGTATGTGGCGG-----C-CGAACGTGCTATTAGCGCTGCCATGTG------GGAACTGGTTA---------------------------------A------------------TTACTTGAA------CCGAACT-GC--AGTT-----------------------------AAAGTGCAATTCAAAATGATTTTCGTT--TCTGCTGCATACAAGTCACCAATTTGATTT----------AAT-----------------TTATTAT-----------------------------------------------------------TA----TTT-ATTTG---TTT------TGTCTTCTTT-TCATTTAC-TTCT-GAT--------TT--GTTTGC-------TCTCGAAC--CAA--ATC---GT-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droYak3 2R:15771069-15771423 + GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------AAGCTT----GCAG-------TTGATTTC-----------TTA-------TTTTCTTA---------------GCC-------GACTTGTATGTGGCGG-----T-CGAACGTGCTATTAGCTCTGTCATGTG------GGAACTGGTTA---------------------------------A------------------TTACATGAA------CCGAACT-CC--AGTT-----------------------------AAAGTGCACTTTGAAATGATTTTCGTT--TCTGCTGCATACAAGTCACTAATTTGATTT----------CAT-----------------TTATTAT------------TA--------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GAT--------TT-GTTTTGC-------TCTCGAAT--CGA--ATC---GT-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droEug1 scf7180000409672:1695505-1695869 + GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCTTTTCTTTATTTTTTCTTA--------TTTCTTT---------------TCC-------GACTTGTATGTGGCCA-----C-CAAACGTGTTATTAACTCTGCCATGTG------GGAACTCGTTA---------------------------------A------------------TTACCTGAA------TCCAAATCCC--CGTT-----------------------------GATTTACAATTTAAAATGATATTCGTTTTTGTGCTACATACAAGTCTGTGCTTTAATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTA---TTT------TATCTTCTTT-TCATTTAC-CTCGTTTT--------TG--GTTTGC-------TCTCGAAT--T----------GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droBia1 scf7180000301754:5664115-5664298 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTGATTTTCCTT--TGTGCCACATACAAGTCCGTACCTTAGTTT----------GAC-----------------TTATTATTTATTT--------------AATTTAATTTA--------------------------------------AT-TT---ATT------TACCTTCTTTTTTATGTAA-CTCT-TTT--------TG--TTTTGC-------CATCGTAT--C---AATC---GA-ACAGGCGATTTTGTCGCTGCTGGTCGACCAAGTAACTGGGAGCAGAGCCGCCGG
droTak1 scf7180000415138:324719-325072 + GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCATTTC-----------TTA-------A-TTCTTT-------------------------GACTTGTATGTGGAGC-----CCCAAACGTGTT-------TTGCTATATG------GGAACTCGTTA---------------------------------A------------------TTACT-GCAGAGCCCCTTAAATCCC------------------------------------ATTTACAATTTAAAATTTTGTTCGTT-TTGGGCTACATACAAGTCTGTACTTTAGTTG----------TAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTTATATGT------TATCTTCTTT-TTATTTAC-TTCCTTTT--------TTGGTTTTGC-------TCTCGAAT--CGA--AAC---GA-ACAGGCGATTTTGTCGCTGCCGGTCGACCGAGTAACTGGGAACAGAGCCGCCGG
droEle1 scf7180000491214:871146-871489 + GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGGC--------------------------------------CAGCTTGCTAGCAG-------TTCATTTC-----------CTT--------TTTCTTT---------------GACGATGCCTGACTTGTATGTGGCGG-----G-CGAACG-------------------TG------GATAATAGTTA---------------------------------A------------------TTGCCTAAA------CCCAAATCCC--AGTT-----------------------------GATTTACCATCTATACTGATTTTCGTT--TGTGCCACATACAAGTCTGTGTT-----------------TAA-----------------TTATTGT----------------------------------------------------------TTA----TTTATTTTC---TTTTCATTCACTCTTCTTT-TCATTTAA-TTACTTTT--------TG--GTTTGC-------TCTCGAAT--CAA--AAC---GA-TTAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droRho1 scf7180000778035:129255-129606 + GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCAT-TC-----------TTA--------TTTCTTT---------------GAG-------GACTTGTATGTGGCGG-----C-CAAACGTGTTGTAAACACAGCCATGTG------GGAAATGGTTT---------------------------------A------------------TTACC-GAA------CTTTATTCCC--AGTT-----------------------------GATTTACAATTTGTAGTGATTTTCGTT--TGTGCTACATACAAGTCTGTACTTTTATTT----------TAT-----------------TTATT------------------------------------------------------------TTA----TTT-ATTTA---TTC------AATCTTCTTT-TCATTTAA-TTTTTTAT--------TT--ATTTGT-------TCCCAAAT--CTA--AAC---GA-TTAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droFic1 scf7180000453948:2038130-2038491 + GCGCCAGGCCAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCATTTC-----------TTA--------TTTCCTA---------------GTC-------GACTTGTATGTGGCGG-----C-CAAACGTGTTATTAACCCTGTCGTGTG------GGAACTCGTTA---------------------------------A------------------TTGCCCGAA------CACAGAT-CCCCACTT-----------------------------GATTTCGAATTTGAAATGATTTTCGTT--TGTGCTACATACAAGTCCGTACTTTAGTTT----------TGT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTCG---TTT-CGTT-CATCTTCTTTTTCGTTGAC-TTCT-TTT--------CT--GTTTGC-------TCTCGAAT--CGA--AAC---GA-ACAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGTCGG
droKik1 scf7180000302385:825348-825656 + GCGCCAGGCTAAAGAAAAGACCAATGTGGAGTCAAAGGCGGACGAGAGAGGTTTGCC--------------------------------------T---TT----GCAG-------ATGACTTT-----------TTA--------TTTCCAA---------------GCCAAAG--GGACTTGTATGTG--------------------------------------------GGAACTCTTTAAAAAT-------------------ATATTACTAA------------------TTACC-----AACTCTTAAAATCC-C---------------------------------------------------------CATT--T----CCCATACAAGTCTCTGCCTTTATTG----------AAC-----------------TTATTATTTCCTT--------------AATTTGATTCACATTTTCATTTATTTT--TATG---------------------------------TATTTTCCTT-TTATTT--------------------T--TTTCGT-------GCTTAA---------C--------TCAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGG
droAna3 scaffold_13266:8900776-8901189 - GCGCCAGGCTAAAGAAAAGACCAATGTCGATTCGAAGGCGGACGAAAGAGGTTTGGCC-CGCCC-TGCCCTGCCCTGCCCTGCCTGCCACTCTGCCAGCTAGCAAGCAG-------TTCACTTA-----------TTC------------TTTACCACCCA-------GACCCC---AGACTTGTATGTGGCCGACTG-C-CGACCGCCAGAT-----------CATG------GGAACTCGTTA---------------------------------A------------------TTGCCTTAA------CCCAAAT-CC--AATTCCTA-------CATTCTCTACTCTACTCTTATTTA-AAATTCAAATGCGTTTCGTT--TGTGCCACATACAAGTCAGAAGTCTGAT------------GAA-----------------TTATTAC------TTTAATTA--------------------------------------------TTA----TTTAATTAG---TT---------------TT-TCATTAAAGTTGCATTT--------TT--GTTTGC-------TCTCTCATGTCGT--AAC---GA-ATAGGCGACTATGCCGCCGCGGGTCGACCAAGTAACTGGGAACAGAGCCGGCGG
droBip1 scf7180000396427:47833-48227 - GCGCCAGGCTAAAGAAAAGACCAATGTCGATTCAAAGGCGGATGAAAGAGGTTTGGCCTAGACCCCGCCCTGCCTAGAC----CAGCTACT----CTGCTA----GCAG-------TTCACTT--------------ATC--TCAA--ACCCA---------------GACTCG---CGACTTGTATGTGGCCT-----C-C------------AGCTCCAC--TCTG------GGAACGCGTTA---------------------------------A------------------TTGCCCTAA------CCCAAAT-CC--AATTCTTGTTCCAACCATTCTC-------CGC-CAATTACAAATTCAAATGCGTTTCGTT--TGTGCCACATACGAGTCACAAGTCTGCT------------GAA-----------------TTATTGT------TTTAATTA--------------------------------------------TTATTTAATTAAG----------------------TTT-TCATTAAAGTTGAATTT--------TT--GTTTGC-------TCTCATGT--CGT--AACGACGA-ATAGGCGACTATGCCGCCGCGGGTCGACCAAGTAACTGGGAACAGAGCCGGCGG
dp5 3:4866829-4867265 - GCGTCAGGCTAAAGAAAAGACCAATGTCGAGTCCAAGGCGGATGAGAGAGGTTTGCT--TGCCCCTGCCC-GCTTCTTC----------------CAGTTCGCTT-CAGTTATCGTTTGAC------------TCTTGTTTTTCG-------TTCTTCCCGAGTCTTGGA-------TGTCTTGTATGTGGCCA----CT-AGAGAGTAC----------------TGGGGCCTGGAACTCATTGAACATCCGAGCGGATGGGAATCAAATGAAACTAAGCAACATTATAGTATCCTCAACG-----ACCTGTTGGCCTCC-CC----------------A-TC---------------------------------TCTCTTT--AGTGCCACATACAAGCCTTATTCTTTATTTTACTTGAGTTCATCGAATAACTTGATTGATTT-------------------TTGGTTGATTT--TACACATTTTGATTTAATTTGGAATTTATATTTG----TTTAAT-------------------------------------------------------TTTTGC-------TCTCA---------------------AGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGTCGG
droPer2 scaffold_2:5059313-5059734 - GCGTCAGGCTAAAGAAAAGACCAATGTCGAGTCCAAGGCGGATGAGAGAGGTTTGCT--TGCCCCTGCCC-GCTTCTTC----------------CAGTTCGCTT-CAGTTATCGTTTGAC------------TCTTGTTTTTCG-------TTCTTCCCGAGTCTTGGA-------TGTCTTGTATGTGGCCA----CT-AGAGAGTAC----------------TGGGGCCTAGAACTCATCAAACA---------------ATCAAATCAAACTAAGCAACATTGTAGTATCCTCAACG-----ACCTGTTGGCCTCC-CC----------------A-TC---------------------------------TCTCTTT--AGTGCCACATACAAGCCTTATTCTTTATTTTACTTGAGTTCATCGAATAACTTGATTGATTT-------------------TTGGTTGATTT--TACACATTTTGATTTAATTTGGAATTTATATTTG----TTTAAT-------------------------------------------------------TTTTGC-------TCTCA---------------------AGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGTCGG
droWil2 scf2_1100000004954:4446833-4446967 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATTG----------TAT-----------------TATTTGT----------------------------------------------------------TTA----TGAAATTTG---AAA-------ATGTTTTGT-T----AAC------------ACATTTA--TTATGATTTTTAATCTCAAAT--AAA--A--------TTAGGCGATTTTGTCGCGGCGGGCCGACCAAGTAACTGGGAACAAAGCCGACGC
droVir3 scaffold_12875:12737199-12737350 + TCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTGT------------------TAAATAT----------CAT-----------------TTAT-AT----------------------------------------TTATTTG-----------------------TGTG------------TATAGTTTAC-TTATTTAC-CTTATTTTAAAAAATTAA--TTTTGC-------TCTTGAAT--TAACAATC---GAAACAGGCGATTTTGTCGCTGCGGGCCGACCAAGTAACTGGGAACAGAGCCGGCGT
droMoj3 scaffold_6496:20018016-20018146 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTT----------CAT-----------------TAATCTT----------------------------------------------------------ATG----ATTTACTTA---TTA------CATTTTGATT-TCAAA----------TT--------AA--TTTTAT-------TCTTAAAT--TGACAATC---GAAACAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGATCAGAACCGGCGT
droGri2 scaffold_15245:7616014-7616146 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTT----------AAT-----------------TTGTTGT----------------------------------------------------------CTA----GCTTACT------TA------TATCTTATAT-TTGTTTA--TGCT-ATT--------CG--TTTTAT-------TCACAAAT--CAACAATC---GAAACAGGCGATTTTGTCGCTGCGGGTCGACCGAGTAACTGGGAACAGAGCCGGCGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------ATTTCCTA---------------GACCAGA--CGACTTGTATGTGGCGG-----A-TGAATGTGCTATTAGCTCCGCCATGTG------GGAACTGGTTA---------------------------------A------------------TTGCTTGAA------CCAAGCT-CC--AGTT-----------------------------------------AAAATGATTATCGTT--TCTGCTGCATACAAGTCGCTAATTTGATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GTT--------CT--GTTTGC-------TCTCGAAT--GTA-AATC---GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................CAGA--CGACTTGTATGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17166.0066000000066000000000
...........................................................................................................................................................................CAGA--CGACTTGTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15120.0020000000020000000000
.............................................................................................................................................................................GA--CGACTTGTATGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15516.0080000000080000000000
...........................................................................................................................................................................CAGA--CGACTTGTATGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1836.6720000000020000000000
...........................................................................................................................................................................CAGA--CGACTTGTATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1616.00600000006000000000
............................................................................................................................................................................AGA--CGACTTGTATGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1624.50900000009000000000
.....................CAATGTTGAGTCGAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.00400400000000000000
...........................................................................................................................................................................CAGA--CGACTTGTATGTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19191.2624000000024000000000
......................AATGTTGAGTCGAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000001000000000
.............GAAAAGACCAATGTTGAGTCGAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.................................GAAGGCGGACGAGAGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCATACAAGTCGCT........................................................................................................................................................................................................................................................................1911.00110000000000000000
............................................................................................................................................................................AGA--CGACTTGTATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTCGCTGCGGGTC.............................1811.00100100000000000000
..............................GTCGAAGGCGGACGAGAGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
......................................................................................................................................................CTA---------------GACCAGA--CGACTTGTATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG---TTT------TATCTTC............................................................................................................................1530.33100000000001000000
............................................................................................................................................................................AGA--CGACTTGTATGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17140.14200000002000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG---TTT------TATCTTCG...........................................................................................................................16200.10200000000002000000
droSec2
GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCCC-------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------ATTTCCTA---------------GAGAAGA--CGACTTGTATGTGGCGG-----A-TGAATGTGCTATTAGCTCCGCCATGTG------GGAACTAGTTA---------------------------------A------------------TTGCTTGAA------CCAAGCT-CC--AGTT-----------------------------------------AAAATGATTATCGTT--TCTGCTGCATACAAGTCGCTAATTTGATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GTT--------CT--GTTTGC-------TCTCGAAT--GTA-AATC---GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................GA--CGACTTGTATGTGGCGG-----A-TGAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCGGGTCGACCAAGTAACTGG...............2511.0011000
dm3
GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------ATTTCCTA---------------GACAAGA--CGACTTGTATGTGGCGG-----A-TGAATGTGCTATTAGCTCCGCCATGTG------GGAACTGGTTA---------------------------------A------------------TTGCTTGAA------TCAAGCT-CC--AGTT-----------------------------------------AAAATGATTATCGTT--TCTGCTGCATACAAGTCACTAATTTGATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GTT--------TT--GTTTGT-------TCTCGAAT--GTA-AATC---GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................CGAAGGCGGACGAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000010000000000
...........................TGAGTCGAAGGCGGACGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AATGTTGAGTCGAAGGCGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000100000000000000000
..........................................................................................................................................................................CAAGA--CGACTTGTATGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GAAGGCGGACGAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGAAGGCGGACGAGAGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000
....................CCAATGTTGAGTCGAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................TATGTGGCGG-----A-TGAATGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTCGCTGCGGGTCGA...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGGGAACAGAGCC.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................GAGTCGAAGGCGGACGAGAGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................ATGTTGAGTCGAAGGCGGACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--GTA-AATC---GA-ATAGGCGAT.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GTTGAGTCGAAGGCGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TCGTT--TCTGCTGCATACAAGT............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CCAATGTTGAGTCGAAGGCGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--GTA-AATC---GA-ATAGGCGATT............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................TGTTGAGTCGAAGGCGGACGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGTCGAAGGCGGACGAGAGAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCGCTGCGGGTCGACCAAGTAAC..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CAAGA--CGACTTGTATGTGGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGTCGACCAAGTAACT.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGACCAAGTAACTGGGAACAG.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAAAAGACCAATGTTGAGTCGAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACTGGGAACAGAGCCGCCG.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACTGGGAACAGAGCCG....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCGCTGCGGGTCGACC.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACCAAGTAACTGGGAACAGAGC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGCGGGTCGACCAAGTA....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGACGAGAGAGGTTTGCC--------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................GTGGCGG-----A-TGAATGTGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGGAACAGAGCCGCC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................GACCAATGTTGAGTCGAAGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TCATTTAC-TTCT-GTT--------TT--G..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GTATGTGGCGG-----A-TGAATGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGTCGACCAAGTAACTGGGAAC...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTT-TCATTTAC-TTCT-GTT--------TT--G..........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CCAATGTTGAGTCGAAGGCGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGTCGACCAAGTAACTGGGAA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTGAGTCGAAGGCGGACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGAGAGAGGTTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCAAGTAACTGGGAACAGAGC......2411.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------------------------------------------------------TTA----TTTAATTTG---TTT------TAT................................................................................................................................2190.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCACTAATTTGATTT----------CAT-----------------AGC.............................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................A--CGACTTGTATGTGGCGG-----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTT----GCAG-------TTGATTTC-----------TTA-------TTTTCTTA---------------GAC-------GACTTGTATGTGGCGG-----C-CGAACGTGCTATTAGCGCTGCCATGTG------GGAACTGGTTA---------------------------------A------------------TTACTTGAA------CCGAACT-GC--AGTT-----------------------------AAAGTGCAATTCAAAATGATTTTCGTT--TCTGCTGCATACAAGTCACCAATTTGATTT----------AAT-----------------TTATTAT-----------------------------------------------------------TA----TTT-ATTTG---TTT------TGTCTTCTTT-TCATTTAC-TTCT-GAT--------TT--GTTTGC-------TCTCGAAC--CAA--ATC---GT-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGCGGGTCGACCAAGT.....................2111.0011000000
......................................................................................................................................................................................................................AGCGCTGCCATGTG------GGAACTGGTTA---------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGTCGCTGCGGGT..............................1811.0010000010
.........................................................................................................................................A-------TTTTCTTA---------------GAC-------GACTTGTATGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
............................GAGTCGAAGGCGGACGAGAGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
droYak3
GCGCCAGGCTAAAGAAAAGACCAATGTTGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------AAGCTT----GCAG-------TTGATTTC-----------TTA-------TTTTCTTA---------------GCC-------GACTTGTATGTGGCGG-----T-CGAACGTGCTATTAGCTCTGTCATGTG------GGAACTGGTTA---------------------------------A------------------TTACATGAA------CCGAACT-CC--AGTT-----------------------------AAAGTGCACTTTGAAATGATTTTCGTT--TCTGCTGCATACAAGTCACTAATTTGATTT----------CAT-----------------TTATTAT------------TA--------------------------------------------TTA----TTTAATTTG---TTT------TATCTTCTTT-TCATTTAC-TTCT-GAT--------TT-GTTTTGC-------TCTCGAAT--CGA--ATC---GT-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................TGTTGAGTCGAAGGCGGACGAGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTG---TTT------TATCTTCTTT-TCA.....................................................................................................................2211.00101000000000
.......................................................................................................................................................................................................................GCTCTGTCATGTG------GGAACTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............AAAAGACCAATGTTGAGTCGAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-------TCTCGAAT--CGA--ATC---GT-AT....................................................2211.00101000000000
............AGAAAAGACCAATGTTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGTCGCTGCGGGTCGA...........................2111.00100000010000
droEug1
GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCTTTTCTTTATTTTTTCTTA--------TTTCTTT---------------TCC-------GACTTGTATGTGGCCA-----C-CAAACGTGTTATTAACTCTGCCATGTG------GGAACTCGTTA---------------------------------A------------------TTACCTGAA------TCCAAATCCC--CGTT-----------------------------GATTTACAATTTAAAATGATATTCGTTTTTGTGCTACATACAAGTCTGTGCTTTAATTT----------CAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTA---TTT------TATCTTCTTT-TCATTTAC-CTCGTTTT--------TG--GTTTGC-------TCTCGAAT--T----------GA-ATAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotal
No Reads
droBia1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTGATTTTCCTT--TGTGCCACATACAAGTCCGTACCTTAGTTT----------GAC-----------------TTATTATTTATTT--------------AATTTAATTTA--------------------------------------AT-TT---ATT------TACCTTCTTTTTTATGTAA-CTCT-TTT--------TG--TTTTGC-------CATCGTAT--C---AATC---GA-ACAGGCGATTTTGTCGCTGCTGGTCGACCAAGTAACTGGGAGCAGAGCCGCCGGSizeHit CountTotal NormTotal
No Reads
droTak1
GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCATTTC-----------TTA-------A-TTCTTT-------------------------GACTTGTATGTGGAGC-----CCCAAACGTGTT-------TTGCTATATG------GGAACTCGTTA---------------------------------A------------------TTACT-GCAGAGCCCCTTAAATCCC------------------------------------ATTTACAATTTAAAATTTTGTTCGTT-TTGGGCTACATACAAGTCTGTACTTTAGTTG----------TAT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTTTATATGT------TATCTTCTTT-TTATTTAC-TTCCTTTT--------TTGGTTTTGC-------TCTCGAAT--CGA--AAC---GA-ACAGGCGATTTTGTCGCTGCCGGTCGACCGAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotal
No Reads
droEle1
GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGGC--------------------------------------CAGCTTGCTAGCAG-------TTCATTTC-----------CTT--------TTTCTTT---------------GACGATGCCTGACTTGTATGTGGCGG-----G-CGAACG-------------------TG------GATAATAGTTA---------------------------------A------------------TTGCCTAAA------CCCAAATCCC--AGTT-----------------------------GATTTACCATCTATACTGATTTTCGTT--TGTGCCACATACAAGTCTGTGTT-----------------TAA-----------------TTATTGT----------------------------------------------------------TTA----TTTATTTTC---TTTTCATTCACTCTTCTTT-TCATTTAA-TTACTTTT--------TG--GTTTGC-------TCTCGAAT--CAA--AAC---GA-TTAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotal
No Reads
droRho1
GCGCCAGGCTAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCAT-TC-----------TTA--------TTTCTTT---------------GAG-------GACTTGTATGTGGCGG-----C-CAAACGTGTTGTAAACACAGCCATGTG------GGAAATGGTTT---------------------------------A------------------TTACC-GAA------CTTTATTCCC--AGTT-----------------------------GATTTACAATTTGTAGTGATTTTCGTT--TGTGCTACATACAAGTCTGTACTTTTATTT----------TAT-----------------TTATT------------------------------------------------------------TTA----TTT-ATTTA---TTC------AATCTTCTTT-TCATTTAA-TTTTTTAT--------TT--ATTTGT-------TCCCAAAT--CTA--AAC---GA-TTAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotal
No Reads
droFic1
GCGCCAGGCCAAAGAAAAGACCAATGTCGAGTCGAAGGCGGACGAGAGAGGTTTGCC--------------------------------------CAGCTTGCTAGCAG-------TTCATTTC-----------TTA--------TTTCCTA---------------GTC-------GACTTGTATGTGGCGG-----C-CAAACGTGTTATTAACCCTGTCGTGTG------GGAACTCGTTA---------------------------------A------------------TTGCCCGAA------CACAGAT-CCCCACTT-----------------------------GATTTCGAATTTGAAATGATTTTCGTT--TGTGCTACATACAAGTCCGTACTTTAGTTT----------TGT-----------------TTATTAT----------------------------------------------------------TTA----TTTAATTCG---TTT-CGTT-CATCTTCTTTTTCGTTGAC-TTCT-TTT--------CT--GTTTGC-------TCTCGAAT--CGA--AAC---GA-ACAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGTCGGSizeHit CountTotal NormTotal
No Reads
droKik1
GCGCCAGGCTAAAGAAAAGACCAATGTGGAGTCAAAGGCGGACGAGAGAGGTTTGCC--------------------------------------T---TT----GCAG-------ATGACTTT-----------TTA--------TTTCCAA---------------GCCAAAG--GGACTTGTATGTG--------------------------------------------GGAACTCTTTAAAAAT-------------------ATATTACTAA------------------TTACC-----AACTCTTAAAATCC-C---------------------------------------------------------CATT--T----CCCATACAAGTCTCTGCCTTTATTG----------AAC-----------------TTATTATTTCCTT--------------AATTTGATTCACATTTTCATTTATTTT--TATG---------------------------------TATTTTCCTT-TTATTT--------------------T--TTTCGT-------GCTTAA---------C--------TCAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGCCGGSizeHit CountTotal NormTotal
No Reads
droAna3
GCGCCAGGCTAAAGAAAAGACCAATGTCGATTCGAAGGCGGACGAAAGAGGTTTGGCC-CGCCC-TGCCCTGCCCTGCCCTGCCTGCCACTCTGCCAGCTAGCAAGCAG-------TTCACTTA-----------TTC------------TTTACCACCCA-------GACCCC---AGACTTGTATGTGGCCGACTG-C-CGACCGCCAGAT-----------CATG------GGAACTCGTTA---------------------------------A------------------TTGCCTTAA------CCCAAAT-CC--AATTCCTA-------CATTCTCTACTCTACTCTTATTTA-AAATTCAAATGCGTTTCGTT--TGTGCCACATACAAGTCAGAAGTCTGAT------------GAA-----------------TTATTAC------TTTAATTA--------------------------------------------TTA----TTTAATTAG---TT---------------TT-TCATTAAAGTTGCATTT--------TT--GTTTGC-------TCTCTCATGTCGT--AAC---GA-ATAGGCGACTATGCCGCCGCGGGTCGACCAAGTAACTGGGAACAGAGCCGGCGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................GACCAATGTCGATTCGAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................AGACCAATGTCGATTCGAAGGCGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
........................TGTCGATTCGAAGGCGGACGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGGAACAGAGCCGGC..1911.001100000
droBip1
GCGCCAGGCTAAAGAAAAGACCAATGTCGATTCAAAGGCGGATGAAAGAGGTTTGGCCTAGACCCCGCCCTGCCTAGAC----CAGCTACT----CTGCTA----GCAG-------TTCACTT--------------ATC--TCAA--ACCCA---------------GACTCG---CGACTTGTATGTGGCCT-----C-C------------AGCTCCAC--TCTG------GGAACGCGTTA---------------------------------A------------------TTGCCCTAA------CCCAAAT-CC--AATTCTTGTTCCAACCATTCTC-------CGC-CAATTACAAATTCAAATGCGTTTCGTT--TGTGCCACATACGAGTCACAAGTCTGCT------------GAA-----------------TTATTGT------TTTAATTA--------------------------------------------TTATTTAATTAAG----------------------TTT-TCATTAAAGTTGAATTT--------TT--GTTTGC-------TCTCATGT--CGT--AACGACGA-ATAGGCGACTATGCCGCCGCGGGTCGACCAAGTAACTGGGAACAGAGCCGGCGGSizeHit CountTotal NormTotal
No Reads
dp5
GCGTCAGGCTAAAGAAAAGACCAATGTCGAGTCCAAGGCGGATGAGAGAGGTTTGCT--TGCCCCTGCCC-GCTTCTTC----------------CAGTTCGCTT-CAGTTATCGTTTGAC------------TCTTGTTTTTCG-------TTCTTCCCGAGTCTTGGA-------TGTCTTGTATGTGGCCA----CT-AGAGAGTAC----------------TGGGGCCTGGAACTCATTGAACATCCGAGCGGATGGGAATCAAATGAAACTAAGCAACATTATAGTATCCTCAACG-----ACCTGTTGGCCTCC-CC----------------A-TC---------------------------------TCTCTTT--AGTGCCACATACAAGCCTTATTCTTTATTTTACTTGAGTTCATCGAATAACTTGATTGATTT-------------------TTGGTTGATTT--TACACATTTTGATTTAATTTGGAATTTATATTTG----TTTAAT-------------------------------------------------------TTTTGC-------TCTCA---------------------AGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGTCGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGTCGCTGCGGGTCGACCAA.......................2511.0010100000000
..............................GTCCAAGGCGGATGAGAGAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................GTCGAGTCCAAGGCGGATGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACCAAGTAACTGGGAACAGA........2411.0010000100000
.........................................................................................................................................................................................................................................................TCCGAGCGGATGGGAATCAAATGA.............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGTCGACCAAGTAACTGGGAACA..........2711.0010100000000
droPer2
GCGTCAGGCTAAAGAAAAGACCAATGTCGAGTCCAAGGCGGATGAGAGAGGTTTGCT--TGCCCCTGCCC-GCTTCTTC----------------CAGTTCGCTT-CAGTTATCGTTTGAC------------TCTTGTTTTTCG-------TTCTTCCCGAGTCTTGGA-------TGTCTTGTATGTGGCCA----CT-AGAGAGTAC----------------TGGGGCCTAGAACTCATCAAACA---------------ATCAAATCAAACTAAGCAACATTGTAGTATCCTCAACG-----ACCTGTTGGCCTCC-CC----------------A-TC---------------------------------TCTCTTT--AGTGCCACATACAAGCCTTATTCTTTATTTTACTTGAGTTCATCGAATAACTTGATTGATTT-------------------TTGGTTGATTT--TACACATTTTGATTTAATTTGGAATTTATATTTG----TTTAAT-------------------------------------------------------TTTTGC-------TCTCA---------------------AGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGAACAGAGCCGTCGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................TTGTAGTATCCTCAACG-----ACCT.......................................................................................................................................................................................................................................................................................................................................................................2113.003300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTCGCTGCGGGTC.............................1812.002110000
droWil2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAATTG----------TAT-----------------TATTTGT----------------------------------------------------------TTA----TGAAATTTG---AAA-------ATGTTTTGT-T----AAC------------ACATTTA--TTATGATTTTTAATCTCAAAT--AAA--A--------TTAGGCGATTTTGTCGCGGCGGGCCGACCAAGTAACTGGGAACAAAGCCGACGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTCGCGGCGGGCCGACC.........................2211.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCGCGGCGGGCCGACC.........................2011.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCGGCGGGCCGACCAA.......................2011.00101000
droVir3
TCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTGT------------------TAAATAT----------CAT-----------------TTAT-AT----------------------------------------TTATTTG-----------------------TGTG------------TATAGTTTAC-TTATTTAC-CTTATTTTAAAAAATTAA--TTTTGC-------TCTTGAAT--TAACAATC---GAAACAGGCGATTTTGTCGCTGCGGGCCGACCAAGTAACTGGGAACAGAGCCGGCGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGACCAAGTAACTGGGAAC...........2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGTCGCTGCGGGCC.............................1911.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTT----------CAT-----------------TAATCTT----------------------------------------------------------ATG----ATTTACTTA---TTA------CATTTTGATT-TCAAA----------TT--------AA--TTTTAT-------TCTTAAAT--TGACAATC---GAAACAGGCGATTTTGTCGCTGCGGGTCGACCAAGTAACTGGGATCAGAACCGGCGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCGGGTCGACCAAGT.....................2011.001000010
droGri2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTT----------AAT-----------------TTGTTGT----------------------------------------------------------CTA----GCTTACT------TA------TATCTTATAT-TTGTTTA--TGCT-ATT--------CG--TTTTAT-------TCACAAAT--CAACAATC---GAAACAGGCGATTTTGTCGCTGCGGGTCGACCGAGTAACTGGGAACAGAGCCGGCGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:17 PM