ID:

dsi_25752

 Coordinate:

3l:7211978-7212113 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.6 -27.5 -27.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGTATACACGCAAGGTTCTGGAGACGCTCGACGCGGAGGCGCGGTCGGAGGTTAGTACTTCAAGACAAGCAATGGGAAGTGGAAGTTGCTTGGAAGTCTTGATGATGTTAAATGTAGAAATTCGCACACATCCCATCGTTGCTACGTGTTTTGTGCTAAACTAAAGTAATCTCTCAACCCACACAGGTGGCTCGTCTGGGTAGTAATCCGTACATGGACCGCCTGCTCAACAAGCT
**************************************************.(((((((...((((((((((((((((.((((((.((((((....(((.....)))....)).))))...))).)))...))))))...))))...)))))))))))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...............TTCTGGAGACGCTCGACGCGGAGGCGT.................................................................................................................................................................................................. 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..........................................................................................TGGAAGACTTGATTTTGTTAAA............................................................................................................................ 22 3 3 1.67 5 0 0 1 0 3 0 0 1 0 0
..........................CTCGACGCGGAGGCGCGGTCG............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................CTGGAGACGCTCGACGCGGAGG..................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...ATACACGCAAGGTTCTGGAGACGCTC............................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............AGGTTCTGGAGACGCTCGAC............................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...TTACACGCAAGGTTCTGGAGACGCT................................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................AGTTGCTTGGAAGTCTTGAT..................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ACACAGGTGGCTCGTCTGGGT................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................TCTGGAGACGCTCGACGCGGA....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........CGCAAGGTTCTGGAGACGC................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................CGCTCGACGCGGAGGCGCGGTCGGAG.......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................TGGAAGACTTGATTTTGTTAA............................................................................................................................. 21 3 5 0.40 2 0 0 0 0 2 0 0 0 0 0
.......................................................................................................CATGTTAAATGTAGAAA.................................................................................................................... 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................TGGAAGACTTGATTTTGTTA.............................................................................................................................. 20 3 17 0.29 5 0 0 1 0 1 0 0 2 1 0
........................................................................................................ATGTCAAATGAAGAAATTC................................................................................................................. 19 2 7 0.29 2 0 0 0 0 0 2 0 0 0 0
.......ACGAAAGGTTCTGGA...................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................GCTGGCTCGTCTGGGTGG................................. 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TGGAAGTCTTGAGTATGGTA.............................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................AAGTAGTCTCTCAAC.......................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................ACCTACACAGGTGACT............................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
......................................................GTACATAAAGACAAGCGAT................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................CAGGTAGCTCGTCGGG..................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................CGCAGTCCATCGTTGCTAC........................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................AGGTGGCTCGTAAGGG.................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................GCGTAGGCGCGGTCGA............................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCATATGTGCGTTCCAAGACCTCTGCGAGCTGCGCCTCCGCGCCAGCCTCCAATCATGAAGTTCTGTTCGTTACCCTTCACCTTCAACGAACCTTCAGAACTACTACAATTTACATCTTTAAGCGTGTGTAGGGTAGCAACGATGCACAAAACACGATTTGATTTCATTAGAGAGTTGGGTGTGTCCACCGAGCAGACCCATCATTAGGCATGTACCTGGCGGACGAGTTGTTCGA
**************************************************.(((((((...((((((((((((((((.((((((.((((((....(((.....)))....)).))))...))).)))...))))))...))))...)))))))))))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
...........................................................................................................................................ATGATGCACAAAACACGGCTT............................................................................ 21 3 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................AGCAGACCCATCGTTAGGCAT........................ 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................TACCTGGCGGACGAGTTGT.... 19 0 1 1.00 1 1 0 0 0 0 0
............TCCAAGACCGCTCCGAGC.............................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0 0
....................................................................................................................................................................................................................GTACCTGACGAACGAGTTATT... 21 3 4 0.25 1 0 0 1 0 0 0
.........................................................GAAATTCTGTTCGTTA................................................................................................................................................................... 16 1 8 0.13 1 0 0 0 0 1 0
......................................................................................ACGAACCTTCAGAAA....................................................................................................................................... 15 1 11 0.09 1 0 0 1 0 0 0
...........................................................................................CCTTAAGAACTTCTGCAAT.............................................................................................................................. 19 3 18 0.06 1 0 0 1 0 0 0
...................CCTCCGCGCGCTGCGC......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 09:42 PM