ID:

dsi_25738

 Coordinate:

3r:10501370-10501484 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.9 -17.7 -17.7

Flybase annnotation

exon [3r_10500443_10501369_+]; CDS [3r_10500443_10501369_+]; CDS [3r_10501485_10501565_+]; exon [3r_10501485_10501899_+]; intron [3r_10501370_10501484_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------##################################################
GAGCGCAAAGGGCACGGGGCACAGAAATTAAGCAACAAATTCGCGGCAAGGTGAGTGCTATGTTTTTGGTTTTATTCCCCTACTTTGGCGAGTATTAAAAAGCTGGCTTAGCTTTTACTGAAACGATGTCTCCACTAAACATTTATTACGCTTGTTTTTTTTTAGAACCGTCCCAACAATCGCAACAACAAGCAGTTCAACAAGCTTTTTACATT
**************************************************(((((((..((((((.(((...(((((.((......)).)))))...((((((((...))))))))...............)))..)))))).)))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR1275487
Male larvae
...............................................................................................TAAAAGGATGGGTTAGCTT..................................................................................................... 19 3 20 10.70 214 185 25 0 3 0 0 0 1
..............................................................................................TTAAAAGGATGGGTTAGCTT..................................................................................................... 20 3 11 9.73 107 98 7 0 2 0 0 0 0
..............................................................................................TTAAAAGGATGGGTTAGCT...................................................................................................... 19 3 20 3.90 78 68 10 0 0 0 0 0 0
..........................................................................................................................................................................TCCCAACAATCGCAACAACAAGCAGT................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................GTGAGTGCTATGTTTTTGGTT................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................TAAAAGGATGGCTTAGCTT..................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................GTTAAAAGGATGGCTTAGCTT..................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
...............................................................................................TAAAAGGATGGCTTAGCT...................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0
............................................................................................TATTAAAAAGCGGGCT........................................................................................................... 16 1 7 0.14 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................TCACAATCGCAACAACAAG....................... 19 2 8 0.13 1 0 0 0 1 0 0 0 0
................................................................................................AACAAGCTGGCTGAGCGTTT................................................................................................... 20 3 18 0.11 2 0 0 0 0 2 0 0 0
................................................................................TCCTTTGTCGAGTTTTAAAAA.................................................................................................................. 21 3 11 0.09 1 0 0 0 0 0 0 1 0
..............................................................................................TTAAAAGGATGGTTTAGCTT..................................................................................................... 20 3 12 0.08 1 0 1 0 0 0 0 0 0
..............................................................................................................................................TTATTCCGCTTGTTTT......................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0
............................................................................................TATTAAAAAGTTGGC............................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

CTCGCGTTTCCCGTGCCCCGTGTCTTTAATTCGTTGTTTAAGCGCCGTTCCACTCACGATACAAAAACCAAAATAAGGGGATGAAACCGCTCATAATTTTTCGACCGAATCGAAAATGACTTTGCTACAGAGGTGATTTGTAAATAATGCGAACAAAAAAAAATCTTGGCAGGGTTGTTAGCGTTGTTGTTCGTCAAGTTGTTCGAAAAATGTAA
**************************************************(((((((..((((((.(((...(((((.((......)).)))))...((((((((...))))))))...............)))..)))))).)))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
.................................................................................................................................................................................TTAGCGTTGTTGTTCGTCAAGT................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................GTCAGCTTCTTCGAAAAATGT.. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................CCGTTGTCGTTCGTCAAGTTGT............. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................CCGTTCCACTCACGATACAAA...................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................GGTTGTTAGCGTTGTTGTT........................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................GCGTTGTTGTTCGTCAAGTTG.............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAAATCTTGGCAGAGTT....................................... 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................TGGGACAGAGGTGATTTTTA......................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
.................................................CGTCTCACGATACAAAA..................................................................................................................................................... 17 2 20 0.15 3 2 0 0 0 0 0 0 1 0
..........................................................................................................................................................AAAAAAAAATGTCGACAGGGTT....................................... 22 3 8 0.13 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................GTCAAGGTGTTCGAAA....... 16 1 10 0.10 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................................AAATCTAGGCAGGGGTGTA.................................... 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................ACAGAAAGAAATCTTGG.............................................. 17 2 17 0.06 1 0 0 0 0 0 1 0 0 0
.....................................................TCACGATACAAAAAT................................................................................................................................................... 15 1 17 0.06 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................GTTGTTGCTAGTCAAGTTAT............. 20 3 18 0.06 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................AAAAAAAATCTAGGCAAG.......................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................AAAAAAATCTCGGCAGT.......................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................ATAGCGTTGCTGTTCGT..................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AAAAAAAAAAATTGGCAGGCT........................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................TCGACAAGTTGTTCG.......... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:43 AM