ID:

dsi_25736

 Coordinate:

2r:5652110-5652259 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.6 -20.5 -20.5

Flybase annnotation

exon [2r_5651901_5652109_+]; CDS [2r_5651901_5652109_+]; intron [2r_5652110_5656004_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGACCAGACAGGTGATCGCGTGGAAGAAGGGCGGCAGATCTCCGTCCAAGGTGCGTGCGCTTATGCACGTGTTTCGCTCCCAAAACCCCTCCTCTCTGACTGCTCCCATTTCTCTGTTCACTCGCACGCCGTTCAACAACAAGTTGCCCAGTTTTGATCGTTCTTTGGACTGTTTCCCCCACTTATGCTCGTTGAGTTGAAGTTTTGAAATGATCATAACCCCAAATGCAGAGCACTACTAATGATGACC
**************************************************..((((((......))))))...............................................(((((((.(((.....((((.....))))..((((((.((....))...)))))).................))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...........................................................CTTATGCACGTGTTTCGC............................................................................................................................................................................. 18 0 1 1.00 1 1 0 0
.........................................................................................................................................TCCAAGTTGGCCAGTTTTGAT............................................................................................ 21 3 9 0.11 1 0 1 0
...................GTGCAACAAGGGCGGCA...................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1

Anti-sense strand reads

CCTGGTCTGTCCACTAGCGCACCTTCTTCCCGCCGTCTAGAGGCAGGTTCCACGCACGCGAATACGTGCACAAAGCGAGGGTTTTGGGGAGGAGAGACTGACGAGGGTAAAGAGACAAGTGAGCGTGCGGCAAGTTGTTGTTCAACGGGTCAAAACTAGCAAGAAACCTGACAAAGGGGGTGAATACGAGCAACTCAACTTCAAAACTTTACTAGTATTGGGGTTTACGTCTCGTGATGATTACTACTGG
**************************************************..((((((......))))))...............................................(((((((.(((.....((((.....))))..((((((.((....))...)))))).................))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................TCAAGAGGCAGGTTCCAGGCTC................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................AAAACTAGCTAGCAGCCTGACAA............................................................................ 23 3 2 1.00 2 0 2 0 0 0 0
........................................................................................................................................................AAACTAGCTAGCAGCCTGACAA............................................................................ 22 3 2 1.00 2 0 2 0 0 0 0
..........................................................................................................................................................ACTAGCTAGCAGCCTGACAAA........................................................................... 21 3 2 1.00 2 0 2 0 0 0 0
...................................TCAAGAGGCAGGTTTCAGGCACG................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
................................CCGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 16 1 4 0.50 2 2 0 0 0 0 0
...............................GCCGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................AACTAGCTAGCAGCCTGACAAA........................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
.............................................................................................................................TTCGGCAGGTTGTTGGTCAAC........................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0
.........................................................................................................................................................AACTAGCTAGCAGCCTGACAA............................................................................ 21 3 3 0.33 1 0 1 0 0 0 0
........................................................................................................................................................AAACTAGCTAGCAGCCTGACA............................................................................. 21 3 3 0.33 1 0 1 0 0 0 0
............................CCCGGCATCAAGAGGCAGGT.......................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0
.............................CCGCGGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
................................CTGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 16 2 20 0.30 6 6 0 0 0 0 0
............................................................................................................................GTTCGGCAGGTTGTTGGTCAA......................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0
............................CCTGCAGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
........................................................................AAGTGAGGGTTGTGGGGTGGA............................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0 0
...................................TCAAGAGGCAGGTACCACGG................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
..............................................................................................................AGGGACAAGTGAGCG............................................................................................................................. 15 1 13 0.15 2 0 0 2 0 0 0
............................ACCTCCGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0
..........................................................................................................................................................ACTAGCTAGCAGCCTGACAA............................................................................ 20 3 8 0.13 1 0 1 0 0 0 0
...............................TCCGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0
...........................TCCCGCCATATAGAGGAAG............................................................................................................................................................................................................ 19 3 11 0.09 1 1 0 0 0 0 0
...................................................................................................................................................................AGACCTGACAAAGGG........................................................................ 15 1 12 0.08 1 0 0 0 0 1 0
.....................................TAGAGGCAGGTTCCT...................................................................................................................................................................................................... 15 1 15 0.07 1 1 0 0 0 0 0
.............................CCTGCGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0
...................................TCAAGAGGCAGGTCCCCCG.................................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0
.............................................................................................................AAGGGACAAGTGAGC.............................................................................................................................. 15 1 17 0.06 1 1 0 0 0 0 0
...........................................................................................................TCAAGAGACAAGTGAGT.............................................................................................................................. 17 2 17 0.06 1 0 0 0 1 0 0
.............CTAGAGCACCTCCTTCC............................................................................................................................................................................................................................ 17 2 17 0.06 1 0 0 0 0 0 1
...............................GTCGTCAAGAGGCAGGT.......................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0
.................................................................................................................GGCAACTGAGCGTGCG......................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0
............................................................................................................AAAGGGCCAAGTGAGCG............................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0
................................................................................................................................................................................................................................TGACGTCTCGTGATCA.......... 16 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 08:53 PM