ID:

dsi_25703

 Coordinate:

3r:4452051-4452200 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.7 -40.6 -40.6

Flybase annnotation

CDS [3r_4452201_4452333_+]; exon [3r_4452201_4452333_+]; intron [3r_4451411_4452200_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCCCCGCCAGCCACGTTTCACATGGCGACGCTGGTGGGAGAACAATGGAGATCCGTCGCGCCGTCGTCGGAATTAATATGCATCTCTGCATGGAGATTAGCATCGACACCCGCCCCTTTTAGTTGGCTCTGGGCTAGACCTGTGGCTATCTATAGCTACGAGTATGGTCGCGGCATCTGAGATGATCTTGTAATTGCAGGACGGCACCGCGCGACGGCTGCTGCGTGCATGGGATCTTCATGGAGGGCG
**************************************************.....((((((((((.((((........((((((((((....))))))..)))))))).((((..((........))...))))....((.((((((((....)))))))).)))))).))))))..(((.(((.........))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................................................CTGCGTGCACTGGATCCTCAT........ 21 3 4 9.00 36 26 10 0 0 0 0 0 0
.......................................................................................................................TTAGGTGGCTCTGGGCTAGT............................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0
........................................................TCGCGCCGTCGTCGGAATTAAT............................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................GGCTGCTGCGTGCATGGGAT.............. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................GCTGCGTGCACTGGATCCTCA......... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
..........................................................GCCCCGTCGTCCGAATT............................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................TGCGTGCACTGGATCCTCAT........ 20 3 8 0.13 1 1 0 0 0 0 0 0 0
........................GGCGTCGCTGGTGGGAGC................................................................................................................................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................GCTGCGTGCACTGGATCCTC.......... 20 3 10 0.10 1 1 0 0 0 0 0 0 0
........................................................TCCCGCCGTCGTCGG................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................GTAATGGCAGCACGGCA........................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCGGGGCGGTCGGTGCAAAGTGTACCGCTGCGACCACCCTCTTGTTACCTCTAGGCAGCGCGGCAGCAGCCTTAATTATACGTAGAGACGTACCTCTAATCGTAGCTGTGGGCGGGGAAAATCAACCGAGACCCGATCTGGACACCGATAGATATCGATGCTCATACCAGCGCCGTAGACTCTACTAGAACATTAACGTCCTGCCGTGGCGCGCTGCCGACGACGCACGTACCCTAGAAGTACCTCCCGC
**************************************************.....((((((((((.((((........((((((((((....))))))..)))))))).((((..((........))...))))....((.((((((((....)))))))).)))))).))))))..(((.(((.........))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 M024
male body		 SRR902009
testis
.............................................................................................................................................................................................................................GACGCACGTGACCTAGGAGTA........ 21 3 4 3.25 13 13 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGACGCACGTGACCTAGGAGT......... 21 3 4 2.50 10 7 0 0 3 0 0 0 0
...............................................CCTCTCGCCAGCGCGGCA......................................................................................................................................................................................... 18 2 4 1.00 4 2 2 0 0 0 0 0 0
..............................................ACCTCTGGGCAGCGCGTC.......................................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................TTATACGTAGAGAAGT............................................................................................................................................................... 16 1 5 0.40 2 0 0 2 0 0 0 0 0
.......................ACCGCTGAGACCACCC................................................................................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................GCGCCGTAGACTCCAATA............................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0
..GGTCCGGTCGGTGCAAAGA..................................................................................................................................................................................................................................... 19 3 20 0.30 6 0 0 5 0 0 0 0 1
.......................ACCGCTGGGACTACCCT.................................................................................................................................................................................................................. 17 2 13 0.23 3 2 1 0 0 0 0 0 0
.......................ACCGCTGAGACCACCCTA................................................................................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGCACGTGACCTAGGAGTA........ 20 3 8 0.13 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................GCTCAGACCAGTGCCGT.......................................................................... 17 2 8 0.13 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GGGGCGCTGCTGACGACG......................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0
.......................ACCGCTGCGACGACCC................................................................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 1 0 0 0
...............................................CCTCTCGCCAGCGCGGCACC....................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0
.............................................................................ATGCGTAGAGACGTA.............................................................................................................................................................. 15 1 11 0.09 1 0 1 0 0 0 0 0 0
.CGGTGTGGTCGGTGCAAAGA..................................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0
.....................................................................................AGATGTACCGCTGATCGTA.................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................CTGTGGCGCGATGCCG............................... 16 2 16 0.06 1 0 0 1 0 0 0 0 0
..................................TACCCACTTGTTACCTC....................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0
...GTCCGGTCGGTGCAAA....................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 07:59 AM