ID:

dsi_25702

 Coordinate:

3l:15958553-15958718 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.9 -22.8 -22.7

Flybase annnotation

exon [3l_15958433_15958552_-]; CDS [3l_15958433_15958552_-]; CDS [3l_15958719_15959438_-]; exon [3l_15958719_15959497_-]; intron [3l_15958553_15958718_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGCTGTGAGCGAAGAAAAGTCCCGCATGACGTACATCATCGATGAAAAGGTGTGTAGGAATACTTTGCTGCTTCTATAATTCAACGAAAGATTGACTATCAAATAATTGCTTAATTGGCAATAAAACTAATTCCTCTATGAGTTATACAAGCTCCAGTTCCAAAATTTTGCAGATAACCAATCTCTTATCATAACATTTATCTTTTCCTTATCAGTGCAATGAAGTCAGAAAATATCAAAGGGAGTGCGAAAAGTACAAAACTGA
**************************************************((.(((((((((....((..((((.(((((((((..((..(((((...........((((((.....)))))).....)))))..))..))))))))).))))..))))))).......)))).))........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............................................AAAAGGTGTGTAGGA.............................................................................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0
....................................................GTGTAGGAATACTTTGCTGC.................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................................................................................TAAGTGCAGTGAAGTCAGA................................... 19 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TGCAGTGAAGTCAGA................................... 15 1 7 0.43 3 1 2 0 0 0 0
.........................CATGACGTACTTCAACGAGGA............................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 1 0 0
......................................................................................................................................................................................................................AGTGCAGTGAAGTCAGAC.................................. 18 2 8 0.25 2 0 2 0 0 0 0
.......................................................................................................................................................................................................................GTGCAGTGAAGTCAGA................................... 16 1 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GTGCAGTGAAGTCAGAC.................................. 17 2 14 0.21 3 1 2 0 0 0 0
.......................................................................................................................................................................................................................GTGCAGTGAAGTCAG.................................... 15 1 10 0.20 2 1 1 0 0 0 0
............................GACGTACATCATCCAGGA............................................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 1 0 0
......................................................................................................................................................................................................................AGTGCAGTGAAGTCAG.................................... 16 1 7 0.14 1 0 1 0 0 0 0
..................................................ATATGTAGGAATACCTTGCT.................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................AAGTGCAGTGAAGTCAGA................................... 18 2 15 0.07 1 1 0 0 0 0 0
......................................................................................................................................................................................................................AGTGCAGTGAAGTCA..................................... 15 1 20 0.05 1 0 1 0 0 0 0
..GCTGTGAGCGGATAAAA....................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................................................................................................GTCCAGTGAAGTCAGA................................... 16 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ACCGACACTCGCTTCTTTTCAGGGCGTACTGCATGTAGTAGCTACTTTTCCACACATCCTTATGAAACGACGAAGATATTAAGTTGCTTTCTAACTGATAGTTTATTAACGAATTAACCGTTATTTTGATTAAGGAGATACTCAATATGTTCGAGGTCAAGGTTTTAAAACGTCTATTGGTTAGAGAATAGTATTGTAAATAGAAAAGGAATAGTCACGTTACTTCAGTCTTTTATAGTTTCCCTCACGCTTTTCATGTTTTGACT
**************************************************((.(((((((((....((..((((.(((((((((..((..(((((...........((((((.....)))))).....)))))..))..))))))))).))))..))))))).......)))).))........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
......................................................................................................................................................................AAAAAGTCTATTGGTTA................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................TGTTCTAGGCCAAGGTTTTTA.................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0
..................................................................................................................................................................................................................ATAGTAACGTTATTTCAGACT................................... 21 3 4 0.25 1 0 0 1 0 0 0
....................................................................................................................................................................................TTAAAGAATGGTATTGTAA................................................................... 19 2 6 0.17 1 0 0 0 0 1 0
......................................................................CGAAGATATTAAGTTGATAAC............................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0
............................................................................................................................................................................................TAGTAATGTAAATAGA.............................................................. 16 1 9 0.11 1 0 0 0 0 0 1
...............TTTTGAGGGCGCACTG........................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0
............................................................................................................................................................TCAAGGTCTTAAGACGT............................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 11:21 PM