ID:

dsi_25696

Coordinate:

3l:8064598-8064747 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

CTCCAACGAATGGGAGCAGATCCAATCCACCGCTGAACTGCAGTTGGGCGGTAAGTTATGATATGGCCCGCCCAATGGGGCTAATAAATTGGCCATCCATCGTTATGGCCATTAATAACCACTTATGACCGCCCACGCACGCACACACACACACACACCCAAACATTCCATCTCAATCAAAAGTGTAATTTCCTTCTCGAAGCCGGCGAATGATGACCGCAGACCACACAAATAATTGTTTGCCATAATT ************************************************....(((((...((((((......((((((((((....))))))..))))......))))))..)))))(((((.(((................................................))).)))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
...........................................................................................................................................................................................ATTTCCTTCTCGAAGCCGG............................................	19	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................TGTCAATCAAAATTGTAATTT...........................................................	21	2	4	0.25	1	0	1	0	0
.....................CGAATCCATCGCCGAACTGC.................................................................................................................................................................................................................	20	3	9	0.11	1	0	1	0	0
.....................................................................................AAATTGTCCATCCATTGT...................................................................................................................................................	18	2	16	0.06	1	0	0	1	0
...............GCAGATCCAATTCACG...........................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1

Anti-sense strand reads

GAGGTTGCTTACCCTCGTCTAGGTTAGGTGGCGACTTGACGTCAACCCGCCATTCAATACTATACCGGGCGGGTTACCCCGATTATTTAACCGGTAGGTAGCAATACCGGTAATTATTGGTGAATACTGGCGGGTGCGTGCGTGTGTGTGTGTGTGTGGGTTTGTAAGGTAGAGTTAGTTTTCACATTAAAGGAAGAGCTTCGGCCGCTTACTACTGGCGTCTGGTGTGTTTATTAACAAACGGTATTAA ************************************************....(((((...((((((......((((((((((....))))))..))))......))))))..)))))(((((.(((................................................))).)))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M024 male body	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR902009 testis
............................................................................................................................................................................................AAAGGAAGAGCTTAGGC.............................................	17	1	3	0.33	1	1	0	0	0	0	0	0	0
...............................CGAATTGATGTCAACCAGCC.......................................................................................................................................................................................................	20	3	9	0.22	2	0	2	0	0	0	0	0	0
...............................................................................................AGGTAGCAATGCCGG............................................................................................................................................	15	1	5	0.20	1	0	0	1	0	0	0	0	0
.............................................................................................................................................................GGGTTTGTGACGTAGAGT...........................................................................	18	2	6	0.17	1	0	0	0	1	0	0	0	0
.........................................................................................................................................GTGCGTGTGTGTGTGTTTATGGCTT........................................................................................	25	3	20	0.10	2	0	0	0	0	0	0	1	1
...............................................................................................................................TGGCGGATGCGTGCG............................................................................................................	15	1	10	0.10	1	0	0	0	0	0	1	0	0
...............................CGAATTGACGTCAACTAGCC.......................................................................................................................................................................................................	20	3	11	0.09	1	0	1	0	0	0	0	0	0
...............................CGAATTGATGTCAACCCCC........................................................................................................................................................................................................	19	3	14	0.07	1	0	1	0	0	0	0	0	0
...............................CGAATTGATGTCAACCAGC........................................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	1	0	0	0
..............................................................................................................................CTGGCGCGCGCGTGCG............................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0
..............................................................................................................................CTGGCGCGCGCGTGC.............................................................................................................	15	2	20	0.05	1	1	0	0	0	0	0	0	0
.......................TAAGATGGCGACTTGACGGC...............................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................TTAGTACTGGCGTCT...........................	15	1	20	0.05	1	1	0	0	0	0	0	0	0

Generated: 04/24/2015 at 10:37 AM