ID:

dsi_25689

 Coordinate:

4:1008664-1008952 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.4 -18.2 -18.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+
AT_richLow_complexityLow_complexity+
mature
star
  1. 2r:2658012-2658031 -
  2. dsi_25689  4:1008793-1008812 +
  3. dsi_25847  4:1009134-1009153 +

Sense Strand Reads

TACAGAATCTTTCACTGGAGTGTAGGCTCAACGACCCATATGCTTCATTGGTAAGTTAATATCATTTTAAAAACTTTAAGTAATGTTAGTTTGTTATACCCGTTACGGGTTTACTACTCAGCGAGTCGAAAAGTAGGTAACAGGTAGAAGGAAACGTTTCCGACCATATGAAGTATATCAGGATCAATAGCCGAGTCGCANNNNNNNNNNATATATATATATTATATATTTAATATATATTTTACATTTTTCAGACGCAGATAAAGCCCGTAAACATGGAATGGAGGATTTCATAAGCACCGATCCTTGTACTTTTGATCATGCTACACTTTTCAAGACATTACAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGCTTCAT
***********************************************************************************************************************************************************************************((((((....((...(((.................((((((((((......)))))))))).............)))((.......))........(((((((.....)))))))..))...))))))...........*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O001
Testis
 SRR618934
dsim w501 ovaries
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
.....................................................................................................................................................................................................................................................................................................................................................TACAGAATCTTACACTGGAGTATAGGC..................... 27 0 1 4.00 4 1 2 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TTACACTGGAGTATAGGCTCAACGACCCA.......... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................TACACTGGAGTATAGGCTCAACGACCCA.......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TGCTACACTTTTCAAGACATTACAGA.......................................... 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................AAGCACCGATCCTTGTACTTTTGA....................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................ATGGAATGGAGGATTTCATAAGCACCC....................................................................................... 27 1 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................AGGATCAATAGCCGAGTCGC.............................................................................................................................................................................................. 20 0 3 0.67 2 0 0 0 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TGATCATGCTACACTTTTCAAGACAT................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TCCTTGTACTTTTGATCATGC................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................AAACATGGAATGGAGGATTTC................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................TAAAGCCCGTAAACATGGAATGGAGGA..................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GCCCGTAAACATGGAATGGAGGA..................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CGCAGATAAAGCCCGTAAACATGTAA............................................................................................................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CGCAGATAAAGCCCGTAAACATGGAA............................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TAACATGTAATGGAGGA..................................................................................................... 17 2 10 0.20 2 0 0 0 0 0 0 0 0 0 2 0 0
.................................................................................................................................................................................TCAGGATCAATAGCCGAGTC................................................................................................................................................................................................ 20 0 20 0.20 4 0 0 0 0 0 0 4 0 0 0 0 0
.......................................................................................AGTTTGTTGTACCCG............................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................CTACTATGCGAGTCGAAGA................................................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TATCAGGATCAATAGC...................................................................................................................................................................................................... 16 0 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................TGAGATCATTTTAAAAACT.......................................................................................................................................................................................................................................................................................................................... 19 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................TAAGATCATTTTAAAAGCT.......................................................................................................................................................................................................................................................................................................................... 19 2 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................TGAGATCATTTTAAAAACTGT........................................................................................................................................................................................................................................................................................................................ 21 3 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................TAATGTCATTTTAAAAA............................................................................................................................................................................................................................................................................................................................ 17 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................TAATATCATTTTTAAAACTCTT....................................................................................................................................................................................................................................................................................................................... 22 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCAGGATCAATAGCCGAGTCG............................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................ATTTTACTTTTTTTAGACCCA.................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................CTACTCAGGGAGTCA..................................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................AACAGATAGAAGGAAA........................................................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ATGTCTTAGAAAGTGACCTCACATCCGAGTTGCTGGGTATACGAAGTAACCATTCAATTATAGTAAAATTTTTGAAATTCATTACAATCAAACAATATGGGCAATGCCCAAATGATGAGTCGCTCAGCTTTTCATCCATTGTCCATCTTCCTTTGCAAAGGCTGGTATACTTCATATAGTCCTAGTTATCGGCTCAGCGTNNNNNNNNNNTATATATATATAATATATAAATTATATATAAAATGTAAAAAGTCTGCGTCTATTTCGGGCATTTGTACCTTACCTCCTAAAGTATTCGTGGCTAGGAACATGAAAACTAGTACGATGTGAAAAGTTCTGTAATGTCTTAGAATGTGACCTCATATCCGAGTTGCTGGGTATACGAAGTA
***********************************************************************((((((....((...(((.................((((((((((......)))))))))).............)))((.......))........(((((((.....)))))))..))...))))))...........*********************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
................................................................................................ATGCGGAATGCCCAAATG................................................................................................................................................................................................................................................................................... 18 2 3 2.33 7 6 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................CTAAAGTATTCGTGGCTA..................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................CTTTGCAAAGGCTGGTATACTTCAT...................................................................................................................................................................................................................... 25 0 3 0.67 2 0 0 0 2 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................TCCGAGTTGCTGGGTATACGAA... 22 0 2 0.50 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................CTCATATCCGAGCTG................ 15 1 2 0.50 1 1 0 0 0 0 0 0 0
.......................TCCGAGTTGCTGGGTATACGAA........................................................................................................................................................................................................................................................................................................................................................ 22 0 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................GAGTAGCTTGGTATACGATGTA 22 3 2 0.50 1 0 0 1 0 0 0 0 0
..........................GAGTAGCTTGGTATACGATGTA..................................................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0
................................................................................................ACGCGGAATGCCCAAATG................................................................................................................................................................................................................................................................................... 18 3 20 0.35 7 2 0 1 0 4 0 0 0
.........................................................................................................................................................................CTTCAACTAGTCCTAGTTACCGGCT................................................................................................................................................................................................... 25 3 5 0.20 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................ATTTCGGCCATTTGTACGTTTC.......................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................AAAAGATCTGTCATGTCCTA........................................ 20 3 5 0.20 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................GCTAGAGTCCTAGTTATCGGCTCA................................................................................................................................................................................................. 24 3 13 0.15 2 0 0 0 2 0 0 0 0
...............................................................................................................................................................................ATAGTCCTAGTTATCGGCTCAGC............................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0
...................................................................................ACAATCAAAGAAAAGGGGCA.............................................................................................................................................................................................................................................................................................. 20 3 19 0.11 2 0 0 0 2 0 0 0 0
............................................................................................................................................................................AATATAGTCCTAGTTCTCGTCTCAGC............................................................................................................................................................................................... 26 3 11 0.09 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................TTTGCTAAGGCAGCTATACT.......................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................AAAAAGTCTGCGTAT................................................................................................................................ 15 1 14 0.07 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................AGGCTGGTATACATC........................................................................................................................................................................................................................ 15 1 18 0.06 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TGAAAACTAGTAAGA................................................................ 15 1 18 0.06 1 0 0 1 0 0 0 0 0
..................................................................................................GCGGAATGCCCAAAT.................................................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................AGTCCTAGTTATCGGCTCAG................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................AAAAAGTCTGAGTCTAGTTT........................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................GGAATGCCCAAATGAC................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................AGACTAGTCCGATGTG............................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................AAAAAGTCTGCGTGT................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................AATATCTTAGAATCTGA................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:1008614-1009002 + dsi_25689 TACAGAATCTTTCACTGGAGTGTAGGCTCAACG--ACCCATA--TGCTTCATT-GGTAAGTTAATATCATTTTAAAAACTTTAAGTAA---------TGT----TAGTTTGTTATACCCGTTAC---------------GGGTTTACTACTCAGCGAGTCGAAAAGTAGGTAACAGGTAGAAGGAAACGTTTCCGACCATATGAAGTATATCAGGATCAATAGCCGAGTCGCANNNNNNNNNNATATATATATATTATATATTTAATATATATTTTACA----T---TT-----TTCAGACGCAGATAAAGCCCGTAAACATGGAATGGAGGATTTCATAAGCACCGATCCTTGTACTTTTGATCATGCTACACTTTTCAAGACATTACAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CAT
droSec2 scaffold_40:274900-275099 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGCTTCTTTGGTAAGTTAATATCATTATAAAAACTTAAAATAATGTTAGTTTATTATACCCGTTACGGGTTTACTACTCAACGAGTCGAAAAGTATGTAACAGGTAGAAGGAAACGTTTCCGACCATATGAAGTATA-------------------TCAGGATCAATAGCCGAGTCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr4:1250783-1250962 + ATATTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAATATATTTAATATAGATTTTAAA----TTT--T-----TTCAGACGCAGATAAAGCCCGGAAACATGGAATGGAGGATTTTATAAGCACCGATCCTTGTACTTTTGATCATGCTACACTTTTCAAGACGTTACAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CTT
droEre2 scaffold_4770:1247808-1248048 - ATTTGGAA--------------------------------------------------------------------AACTGTA---------------GT----ATTGTTTTTATACCCGTTACTCGTA--GAGTAAAAGGGTATACTAG---ATTCGTTGATAGCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACAGGCAGAAGAAAGCGTTTCCGACCATATAAAGTACATACATACATATATTCTTGATCATA-----------------------------------------TTCTAATATACATTTAATGCTAAGCAGCTTTGCACTAAAC---------------------------------------------------------------------------------------------------------------------------TA-----------------------------------------------A------------------------------ATATAGTT--------------------A-CAACTCTT--AGGTTAAACGTTTTTGCAGGTAAT--------------------------------------------------------------AATGAAAGAT---------------------------------------------------------AT---CTC
droYak3 3L:23402586-23402919 + TTTGAAAA---------------------------------------------------------------------ACGTTA---------------ATTTTATCGATTTTTATACCCGTAACTTGTA--GAGTAAAAGGGTACACTAA---ATTCACCCTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAACATGTAGAAGGCATCGTTTTCGACCATATAATTTATATATATATATATATATATATATATA-----------------------------------------TATTTATATATATATA----------------------------------------------------------------TATAAG---------------------------TTTTTGGAATCTGTATCTT-AA-----------CT---------------TA-----------------------------------------------A------------------------------TCTTAGTTTTCTAG-----------CTTT-ATTAGTTTTTGGGACCGAGGCGTTCATACGGACAGACGAAATATATATATATTATATAGATTCCAA--AAACGT------------------------------------------AGGCGCACCCAAGTTTATATTCACGCCCACTCTAACACTATAAACCGCCCAAGTC
droEug1 scf7180000408885:45782-46064 - ATG------------------------------------------------------------------------------------------------T----TTCATTTTTATACCCATTACTCGTA--GAGTAAAAGGGTATATTAG---ATTCGTTGAAAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTACAGGTAGAAGGAATCGTTTCCGACCCTATAAAGTATATG--------TATTCTTGATCAGGAACTATAGTGGCATCTCT------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGTTA-----------CTCAACATGCTATCTCTGACAACAGGTGGCGCCTTGTGAATATCC-----------------------------------------------------------------------------------------------------------------ACTA------------------------------GCAAAATGAATATTTTAAAATTGTGTAAAACAGTAACGGGTATCTTATAGTCGCTGCACTCGACTATAGCCTTTCCTCCTGT----------------TT---TAT
droBia1 scf7180000301214:22802-23118 + TTT------------------------------------------------------------------------------------------------------------TTATACCCGTTACTCATA--GGGTAAAAGGGAGTAATAG---ATTCGTCGGAAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAACAAGTTTAAGGAAACGTTCCCGACCCGATAATATATACA-----------------TCATGATCACTGGCCGAGTCGATCTAGACATGAACGTCTGTCTGTCTGCCCATATATACGCATACCCAACCCGCAAGGCGCAGGATCACTTATAA----------------------GGC----------------------------------------------------------------------------------------------------------------------CATACATCTCAAGACCATTAATAAGGTATGCAATTATGACGGTCTAGAATCTCTTAGTTATATGA-----------CTTA-CCTCATTT--A-GTTTACTGAAATTGAAGATACG--------------------------------------------------------------AAAGAAGGCA-----ATA----------------------------------------------TC-TT---CTT
droTak1 scf7180000412873:27645-27973 + TATAAAAA--TTGATCAAA-------------------------------------------------------------------------------GT----GCAATTTTTATACCCGTTACTCGTA--AAGTAAAAGGGTATATTGT---ATTCGTGCAAAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACAGCTAGAAGGAAGCGTTTCCAACCCCATAAAGTATATA--------TATTCTTGATAAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCTGTCTATCTGTCCGTCTGTATGA----------ACAGTCAAATCTCGGAAACT---------------------------------------------------------------------------------------------------------------ACAAAAGCTAGAAGGTTGAGATTTTCCACACA------------------------------------------------------------------------------------------------------------------------------TATTCTTGGGCTTCCTAAGCAGCGC------------------------------------------AAGTTTATTTCAGGCGAGCGCCACGCTTCCTCTAACGCCCACAATCGCC---CAT
droEle1 scf7180000490694:43285-43467 - TATACATTTTTTT--T-AG-------------------------------------------------------------------------------GT----GC-------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATATATTTT---CTAATTTCAT-----TTTAGACGCAGACAAAGCACGGAAACATGGAATGGAAGATTTTATAAGCACTGATCCGTGTACTTTTGACCATGCTACGCTTTTCAAAACATTACAAAACCTCACACTAGAATATAGGCTTAATGATCCATACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CTC
droRho1 scf7180000776697:1125-1476 + TCATTGGT-------GAAG-----------------------------------------ATGAGTTCTTTTGTGCATCTTTAA---A---------TGT----TCTGTTTTTATATCCTTG-------------CAGAGGGTATTATAA---TTTTGGTCAAAAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACGCAGTGAAGGAGACATCTCCAACCCTATAAAGTATATA--------TATTCCTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCCGTCTGTCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGATATCG-----------------------------------------------------------------------------------------------------------------AACTGACACTTTGCACACACCCTTCTTTCCTTTGC------------------------------------------------------------------------------------------------------------------------------ACGCAGTATATATGTCGGAACGGCCGGGATCGGCCGACTATATCCTATAGCTGCCATA-------------------------------------TAACT---GAT
droFic1 scf7180000453435:51753-51895 + TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATGCAGACAAAGCTCGGAAACATGGAATGGAGGATTTCATAAGCACCGACCCTTGTACTTTTGACCATGCTTCACTTTTTAAAACATTACAAAACCTAACCTTGGAGTACAGGCTCAATGATCCATACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CTC
droKik1 scf7180000302329:591236-591506 + TTT------------------------------------------------------------------------------------------------------------TTATACCCTTG---------------CAGGGTATTATAA---TTTCAGTCAGAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATA--------TATTCTTGATCAGCATCAACAGGGGAATCATTCTAGATATGTCAGG----------------------------------------------------------------AAGAAATCGATTTTTTGGTCATTTTTGCAAA---------------------------ATT----------------------------------------------TTA-----------------------------------------------A------------------------------AAGGGGTT--------------------A-CATCATTA--AAATT--------------------------------------TTTGATTTTGATAAAAAATTGATTTTTTAAAATTTTAAAATGAAGTA------------------------------------TGCAGATTTATTAACTGTAGAAAATCTTG---CAC
droAna3 scaffold_13089:300379-300538 + TACACTAA-------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------------------------------------------------------------------------------------------------------------------------------ATGTTTTATTCAGACGCAGACAAAGCACGGAAGCATGGAATGGAGGATTTTATAAGCGCTGATCCTTGTAAATTCGATCATGCAACACTTTTTAAGACCTTACAAAATCTTACACTTGAATATCGACTTAGTGATCCGTATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CCC
droBip1 scf7180000394767:33274-33429 + TTAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTATCCAGACGCAGACAAAGCCAGAAAGCATGGAATGGAGGATTTTATAAGCGCTGATCCTTGTAAATTTGATCATGCCGCACTTTTTAAAACCTTGCAAAATCTTACACTCGAATATCGACTTAATGATCCTTATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CTC
dp5 XL_group1e:9868248-9868488 + TGTAAAGTCTTTGGTAGAAGTGCCCGCCCAAATCTAAACAAATTTT-TTTATCGCGTAAATCAAGAAAACGTTCAAAACTTCATGTGGCTTCTCGCCTAT----TGTCTTTTTATACCCGATACTCAAAATGAGTATTGGGGTATATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGTCCAGAAGGAATCGTTTCCGACCGCAGAAAGTATATA--------TATTCTTAATCAGTATCAATATCCGAGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_8464:43-210 - TATTACTTCTTTTG-------------------------------------------------------------------------------------------TTTTTTTTTTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----TTTAGATGCAGATAAAGCACGAAAGCATGGCATGGAGGATTATATAAGTGCTGATCCTTGTACATATGACCATGCTACGCTTTTTAAAACTTTACAAAACTTAACGCTTGAATATCGGCTTAACGATCCGTACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CTC
droWil2 scf2_1100000004943:546513-546687 - ATACATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTTATATT-----------TT---TTAATTTTTTTTT--GTAAGATGCGGATAAGGCACGAAAACATGGCATGGAGGACTATATAAGCGCCGATCCGTGTACATTTGACCATGCTAATCTTTTTAAAACTTTACAAAATCTAACTCTTGAATATCGCTTGAACGACCCATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CAT
droVir3 scaffold_13045:780531-780768 - GTCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------ATATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGCATAGAAGGCGACGTCTCCGACCCCATAAAGTAAATA--------TATTCCTGATCAGCATCAACAGCCGAGACGATGCC-TCATTTCTA-------------------------------------------------------------------------------------ATTTCTGTTAAACTTTTCTCAACTGATGCTTTAATTAAGTCTTCTAACTTTTATTTT-AATTCATCTATCACT---------------TG-----------------------------------------------A------------------------------CCTTGTTTTTCAATACCGACCAACATTTTATTTGGT-------------------------ACTTGCTTAATGCTCTTATGC-------------------------------------------------------------------------------------------------------------TGTG---TAT
droMoj3 scaffold_6498:1578976-1579144 - TATGCTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATAAAAT--------ATATTTTTGACATAGATGCGGATAAAGCACGGAAGCATGGAATGGAGGATTATATAAGTGCGGATCCGTGTACATTTGATCATGCAAGCTTATTTAAAATATTACAAAATCTAACACTTGAATACCGGTTAAGTGATCCTTATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---CTT
droGri2 scaffold_14822:286884-287075 - TATATATA--TATATTATT-----------------------------------------------GTTATTATATTAT--------------------T----TTTATTATTAT---------------------------------------------------------------------------------------------------------------------------------------------ATACATTT-----------------------AA-----TCTAGATGCCGATAAGGCGCGCAAGCATGGCATGGAGGATTATATAAGTGCCGATCCCTGTACCTTCGATCATGCAACACTTTTTAAGACATTACAAAACTTGACGCTCGAATATCGCCTAAGTGATCCCTACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACAGAATCTTTCACTGGAGTGTAGGCTCAACG--ACCCATA--TGCTTCATT-GGTAAGTTAATATCATTTTAAAAACTTTAAGTAA---------TGT----TAGTTTGTTATACCCGTTAC---------------GGGTTTACTACTCAGCGAGTCGAAAAGTAGGTAACAGGTAGAAGGAAACGTTTCCGACCATATGAAGTATATCAGGATCAATAGCCGAGTCGCANNNNNNNNNNATATATATATATTATATATTTAATATATATTTTACA----T---TT-----TTCAGACGCAGATAAAGCCCGTAAACATGGAATGGAGGATTTCATAAGCACCGATCCTTGTACTTTTGATCATGCTACACTTTTCAAGACATTACAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................TACAGAATCTTACACTGGAGTATAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.00400000012000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGGAGTATAGGCTCAACGACCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................TACACTGGAGTATAGGCTCAACGACCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGCTACACTTTTCAAGACATTACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.00200000020000000000
...................................................................................................................................................................................................................................................................................................................................................AAGCACCGATCCTTGTACTTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
................................................................................................................................................................................................................................................................................................................................ATGGAATGGAGGATTTCATAAGCACCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.00200200000000000000
....................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.67200002000000000000
........................................................................................................................................................................................................................................................................................................................................................................TGATCATGCTACACTTTTCAAGACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000000000
............................................................................................................................................................................................................................................................................................................................................................TCCTTGTACTTTTGATCATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000100000000000
............................................................................................................................................................................................................................................................................................................................AAACATGGAATGGAGGATTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000000000
..................................................................................................................................................................................................................................................................................................................TAAAGCCCGTAAACATGGAATGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000000000
......................................................................................................................................................................................................................................................................................................................GCCCGTAAACATGGAATGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000000000100000
............................................................................................................................................................................................................................................................................................................CGCAGATAAAGCCCGTAAACATGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000000000
..................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.20400000000004000000
................................................................................................................................................................................................................TATCAGGATCAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16120.08100000000001000000
..................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000010000
droSec2
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGCTTCTTTGGTAAGTTAATATCATTATAAAAACTTAAAATAATGTTAGTTTATTATACCCGTTACGGGTTTACTACTCAACGAGTCGAAAAGTATGTAACAGGTAGAAGGAAACGTTTCCGACCATATGAAGTATA-------------------TCAGGATCAATAGCCGAGTCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................TACACTGGAGTATAGGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
dm3
ATATTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAATATATTTAATATAGATTTTAAA----TTT--T-----TTCAGACGCAGATAAAGCCCGGAAACATGGAATGGAGGATTTTATAAGCACCGATCCTTGTACTTTTGATCATGCTACACTTTTCAAGACGTTACAGAATCTTACACTGGAGTATAGGCTCAACGACCCATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................GCAGATAAAGCCCGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AACATGGAATGGAGGATTTTATAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGCTCAACGACCCATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---C..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AATGGAGGATTTTATAAGCACCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CATGGAATGGAGGATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TACAGAATCTTACACTGGAGTATAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................AAACATGGAATGGAGGATTTTATAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................................................................................................TTT--T-----TTCAGACGCAGATAAAGCCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GATAAAGCCCGGAAACATGGAATGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ATCATGCTACACTTTTCAAGACGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTCAAGACGTTACAGAATCTTACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................TGGAATGGAGGATTTTATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTATAAGCACCGATCCTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CCCGGAAACATGGAATGGAGGATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GAAACATGGAATGGAGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TAAAGCCCGGAAACATGGAATGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEre2
ATTTGGAA--------------------------------------------------------------------AACTGTA---------------GT----ATTGTTTTTATACCCGTTACTCGTA--GAGTAAAAGGGTATACTAG---ATTCGTTGATAGCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACAGGCAGAAGAAAGCGTTTCCGACCATATAAAGTACATACATACATATATTCTTGATCATA-----------------------------------------TTCTAATATACATTTAATGCTAAGCAGCTTTGCACTAAAC---------------------------------------------------------------------------------------------------------------------------TA-----------------------------------------------A------------------------------ATATAGTT--------------------A-CAACTCTT--AGGTTAAACGTTTTTGCAGGTAAT--------------------------------------------------------------AATGAAAGAT---------------------------------------------------------AT---CTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGAAAGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000003
droYak3
TTTGAAAA---------------------------------------------------------------------ACGTTA---------------ATTTTATCGATTTTTATACCCGTAACTTGTA--GAGTAAAAGGGTACACTAA---ATTCACCCTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAACATGTAGAAGGCATCGTTTTCGACCATATAATTTATATATATATATATATATATATATATA-----------------------------------------TATTTATATATATATA----------------------------------------------------------------TATAAG---------------------------TTTTTGGAATCTGTATCTT-AA-----------CT---------------TA-----------------------------------------------A------------------------------TCTTAGTTTTCTAG-----------CTTT-ATTAGTTTTTGGGACCGAGGCGTTCATACGGACAGACGAAATATATATATATTATATAGATTCCAA--AAACGT------------------------------------------AGGCGCACCCAAGTTTATATTCACGCCCACTCTAACACTATAAACCGCCCAAGTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGGCGTTCATACGGACAGACG.....................................................................................................................................2525.0010000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAA--AAACGT------------------------------------------AGGCGCACCCAAG..........................................2520.50100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAA--AAACGT------------------------------------------AGGCGCACCCAAGTT........................................2620.50100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------AGGCGCACCCAAGTTTATATTCACGCC............................2820.50100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAGATTCCAA--AAACGT------------------------------------------AGGCG..................................................2520.50101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAA--AAACGT------------------------------------------AGGCGCACCCAAG..........................................2420.50101000000000
droEug1
ATG------------------------------------------------------------------------------------------------T----TTCATTTTTATACCCATTACTCGTA--GAGTAAAAGGGTATATTAG---ATTCGTTGAAAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTACAGGTAGAAGGAATCGTTTCCGACCCTATAAAGTATATG--------TATTCTTGATCAGGAACTATAGTGGCATCTCT------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGTTA-----------CTCAACATGCTATCTCTGACAACAGGTGGCGCCTTGTGAATATCC-----------------------------------------------------------------------------------------------------------------ACTA------------------------------GCAAAATGAATATTTTAAAATTGTGTAAAACAGTAACGGGTATCTTATAGTCGCTGCACTCGACTATAGCCTTTCCTCCTGT----------------TT---TATSizeHit CountTotal NormTotal
No Reads
droBia1
TTT------------------------------------------------------------------------------------------------------------TTATACCCGTTACTCATA--GGGTAAAAGGGAGTAATAG---ATTCGTCGGAAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAACAAGTTTAAGGAAACGTTCCCGACCCGATAATATATACA-----------------TCATGATCACTGGCCGAGTCGATCTAGACATGAACGTCTGTCTGTCTGCCCATATATACGCATACCCAACCCGCAAGGCGCAGGATCACTTATAA----------------------GGC----------------------------------------------------------------------------------------------------------------------CATACATCTCAAGACCATTAATAAGGTATGCAATTATGACGGTCTAGAATCTCTTAGTTATATGA-----------CTTA-CCTCATTT--A-GTTTACTGAAATTGAAGATACG--------------------------------------------------------------AAAGAAGGCA-----ATA----------------------------------------------TC-TT---CTTSizeHit CountTotal NormTotal
No Reads
droTak1
TATAAAAA--TTGATCAAA-------------------------------------------------------------------------------GT----GCAATTTTTATACCCGTTACTCGTA--AAGTAAAAGGGTATATTGT---ATTCGTGCAAAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACAGCTAGAAGGAAGCGTTTCCAACCCCATAAAGTATATA--------TATTCTTGATAAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCTGTCTATCTGTCCGTCTGTATGA----------ACAGTCAAATCTCGGAAACT---------------------------------------------------------------------------------------------------------------ACAAAAGCTAGAAGGTTGAGATTTTCCACACA------------------------------------------------------------------------------------------------------------------------------TATTCTTGGGCTTCCTAAGCAGCGC------------------------------------------AAGTTTATTTCAGGCGAGCGCCACGCTTCCTCTAACGCCCACAATCGCC---CATSizeHit CountTotal NormTotal
No Reads
droEle1
TATACATTTTTTT--T-AG-------------------------------------------------------------------------------GT----GC-------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATATATTTT---CTAATTTCAT-----TTTAGACGCAGACAAAGCACGGAAACATGGAATGGAAGATTTTATAAGCACTGATCCGTGTACTTTTGACCATGCTACGCTTTTCAAAACATTACAAAACCTCACACTAGAATATAGGCTTAATGATCCATACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CTCSizeHit CountTotal NormTotal
No Reads
droRho1
TCATTGGT-------GAAG-----------------------------------------ATGAGTTCTTTTGTGCATCTTTAA---A---------TGT----TCTGTTTTTATATCCTTG-------------CAGAGGGTATTATAA---TTTTGGTCAAAAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACGCAGTGAAGGAGACATCTCCAACCCTATAAAGTATATA--------TATTCCTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCCGTCTGTCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGATATCG-----------------------------------------------------------------------------------------------------------------AACTGACACTTTGCACACACCCTTCTTTCCTTTGC------------------------------------------------------------------------------------------------------------------------------ACGCAGTATATATGTCGGAACGGCCGGGATCGGCCGACTATATCCTATAGCTGCCATA-------------------------------------TAACT---GATSizeHit CountTotal NormTotal
No Reads
droFic1
TTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATGCAGACAAAGCTCGGAAACATGGAATGGAGGATTTCATAAGCACCGACCCTTGTACTTTTGACCATGCTTCACTTTTTAAAACATTACAAAACCTAACCTTGGAGTACAGGCTCAATGATCCATACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---CTCSizeHit CountTotal NormTotal
No Reads
droKik1
TTT------------------------------------------------------------------------------------------------------------TTATACCCTTG---------------CAGGGTATTATAA---TTTCAGTCAGAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATA--------TATTCTTGATCAGCATCAACAGGGGAATCATTCTAGATATGTCAGG----------------------------------------------------------------AAGAAATCGATTTTTTGGTCATTTTTGCAAA---------------------------ATT----------------------------------------------TTA-----------------------------------------------A------------------------------AAGGGGTT--------------------A-CATCATTA--AAATT--------------------------------------TTTGATTTTGATAAAAAATTGATTTTTTAAAATTTTAAAATGAAGTA------------------------------------TGCAGATTTATTAACTGTAGAAAATCTTG---CACSizeHit CountTotal NormTotal
No Reads
droAna3
TACACTAA-------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------------------------------------------------------------------------------------------------------------------------------ATGTTTTATTCAGACGCAGACAAAGCACGGAAGCATGGAATGGAGGATTTTATAAGCGCTGATCCTTGTAAATTCGATCATGCAACACTTTTTAAGACCTTACAAAATCTTACACTTGAATATCGACTTAGTGATCCGTATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................GCGCTGATCCTTGTAAATTCGATCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................................................................................................................................................................................................................................................GCACGGAAGCATGGAATGGAGGATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................CCTTGTAAATTCGATCATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACTTAGTGATCCGTATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---...2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTACACTTGAATATCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................AATATCGACTTAGTGATCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
TTAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTATCCAGACGCAGACAAAGCCAGAAAGCATGGAATGGAGGATTTTATAAGCGCTGATCCTTGTAAATTTGATCATGCCGCACTTTTTAAAACCTTGCAAAATCTTACACTCGAATATCGACTTAATGATCCTTATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CTCSizeHit CountTotal NormTotal
No Reads
dp5
TGTAAAGTCTTTGGTAGAAGTGCCCGCCCAAATCTAAACAAATTTT-TTTATCGCGTAAATCAAGAAAACGTTCAAAACTTCATGTGGCTTCTCGCCTAT----TGTCTTTTTATACCCGATACTCAAAATGAGTATTGGGGTATATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGTCCAGAAGGAATCGTTTCCGACCGCAGAAAGTATATA--------TATTCTTAATCAGTATCAATATCCGAGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23136.0036014001012000
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22113.00130710100400
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.0080410000300
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060600000000
............................................................................................................................................................TGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050100000400
................................................................................................................................................TATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040100000300
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040300000100
...........................................................................................................................................................TTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030300000000
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020200000000
...........................................................................................................................................................TTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
..................................................................................................................................................TTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................TGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..............................................................................................................................................TATATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
...............................................................................................................................................ATATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
...................................................................................................................................................TAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000100
...........................................................................................................................................................TTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................TAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.........................................................................................................................................................ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000100
..................................................................................................................................................TTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000100
............................................................................................................................................................TGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
................................................................................................................................................TATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
...............................................................................................................................................ATATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000100
..........................................................................................................................................GGGGTATATTAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................TTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.751501500000000
........................................................................................................TGTCTTTTTATACCCGATACTCAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.6720000000200
...............................................................................................................................AAATGAGTATTGGGGTATATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.601201200000000
..................................................................................................................................TGAGTATTGGGGTATATTAG---ATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.4590900000000
......................................................................................................................................................................................................................................................................................................................................................AGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.4080000000080
......................................................................................................................................TATTGGGGTATATTAG---ATTTGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000100
..................................................................................................................................TGAGTATTGGGGTATATTAG---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3060000006000
............................................................................................................................................................................................................................................................................................................................................................TGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGTCCAGAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3060000000060
..............................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGTCCAGAAGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000005000
................................................................................................................................................................GTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000002300
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510100000000
...................................................................................................................................................TAG---ATTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510100000000
...........................................................................................................................................GGGTATATTAG---ATTTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010100000000
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010010000000
..........................................................................................................................................................TTTGGGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.1710100000000
...........................................................................................................................CTCAAAATGAGTATTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530300000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCAGAAGGAATCGTTTCCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530300000000
................................................................................................................................................................GTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000003000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.1310100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCAGAAGGAATCGTTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020200000000
.......................................................................................................................................ATTGGGGTATATTAG---ATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020002000000
..........................................................................................................................................................................................................................................................................................................................................................GATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGTCCAGAAGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGTTTCCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910100000000
.....................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGTTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
................................................................................................................TATACCCGATACTCAAAATGAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
............................................................................................................................TCAAAATGAGTATTGGGGTATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000010
............................................................................................................................TCAAAATGAGTATTGGGGTATATTAG---AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510100000000
................................................................................................................................................................GTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGGATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
droPer2
TATTACTTCTTTTG-------------------------------------------------------------------------------------------TTTTTTTTTTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----TTTAGATGCAGATAAAGCACGAAAGCATGGCATGGAGGATTATATAAGTGCTGATCCTTGTACATATGACCATGCTACGCTTTTTAAAACTTTACAAAACTTAACGCTTGAATATCGGCTTAACGATCCGTACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................AGATAAAGCACGAAAGCATGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501010000
...................................................................................................................................................................................................................................................................................................................................GCATGGAGGATTATATAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
droWil2
ATACATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTTATATT-----------TT---TTAATTTTTTTTT--GTAAGATGCGGATAAGGCACGAAAACATGGCATGGAGGACTATATAAGCGCCGATCCGTGTACATTTGACCATGCTAATCTTTTTAAAACTTTACAAAATCTAACTCTTGAATATCGCTTGAACGACCCATATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................AGGCACGAAAACATGGCATGGAGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000
............................................................................................................................................................................................................................................................................................................................AAACATGGCATGGAGGACTATATAAGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
..................................................................................................................................................................................................................................................................................................................................................TAAGCGCCGATCCGTGTACATTTGACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
droVir3
GTCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------ATATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGCATAGAAGGCGACGTCTCCGACCCCATAAAGTAAATA--------TATTCCTGATCAGCATCAACAGCCGAGACGATGCC-TCATTTCTA-------------------------------------------------------------------------------------ATTTCTGTTAAACTTTTCTCAACTGATGCTTTAATTAAGTCTTCTAACTTTTATTTT-AATTCATCTATCACT---------------TG-----------------------------------------------A------------------------------CCTTGTTTTTCAATACCGACCAACATTTTATTTGGT-------------------------ACTTGCTTAATGCTCTTATGC-------------------------------------------------------------------------------------------------------------TGTG---TATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....TG-------------------------------------------------------------------------------------------------------------------------------------------------------------ATATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGCATAGAAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................ATATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGCATAGAAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AATTCATCTATCACT---------------TG-----------------------------------------------........................................................................................................................................................................................................................................1930.331000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------TATTCCTGATCAGCATCAACAGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.171000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................ATATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACGCATAGAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
TATGCTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATAAAAT--------ATATTTTTGACATAGATGCGGATAAAGCACGGAAGCATGGAATGGAGGATTATATAAGTGCGGATCCGTGTACATTTGATCATGCAAGCTTATTTAAAATATTACAAAATCTAACACTTGAATACCGGTTAAGTGATCCTTATGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---CTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................GTACATTTGATCATGCAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
droGri2
TATATATA--TATATTATT-----------------------------------------------GTTATTATATTAT--------------------T----TTTATTATTAT---------------------------------------------------------------------------------------------------------------------------------------------ATACATTT-----------------------AA-----TCTAGATGCCGATAAGGCGCGCAAGCATGGCATGGAGGATTATATAAGTGCCGATCCCTGTACCTTCGATCATGCAACACTTTTTAAGACATTACAAAACTTGACGCTCGAATATCGCCTAAGTGATCCCTACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---CGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................ATAAGTGCCGATCCCTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 09:39 PM