ID:

dsi_25687

 Coordinate:

3l:9385204-9385456 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.8 -27.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATCTGCTGACCACCTGCGGGCAGCGCGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGCCCAGGATCCAAACAGCCGACCGCTTGTACATAGCCAGGTGCATGCCTTAGGCTCCCCTAGAGCTCCCCTCTTCTCATGCATTTTTGCAATTATCAATTGTGCAATTATTACCTCTAACTCTTTTTCTTTCATGTAAACAATACCAAATACCAATACCAAATCCAATACCAAACCAAAAACAAACTAACACGCATTATCATCATTAACCAATCAATCTGATACCAAAATCGAAAAATATCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGGACACGTTTCTATG
**************************************************((((..(((((.(((.........((((....((.(((((........))))).))....)))).....((((.....)))).....((((....))))........))).)))))..))))...................................................................................(((((.................))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
......................................................................................................................TAGAGCTCCCCTCTTCTC......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GGATGATTTCATAAACTC................................. 18 0 1 1.00 1 0 0 0 1 0 0 0
.............CTGCGGGCAGCGCGTCGGCC................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................TAGAGCTCCCCTCTTCTCA........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
....................CAGCGCGTCGGCCGG.............................................................................................................................................................................................................................................................................................................................. 15 1 2 0.50 1 0 1 0 0 0 0 0
...............GCGGGCGGCCCGTCGGCC................................................................................................................................................................................................................................................................................................................................ 18 2 3 0.33 1 0 1 0 0 0 0 0
.....................................................................CTAACAGCCGAGCGCTT........................................................................................................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 1 0 0
......................................................................................................................................................TTATCAATTGTGTAATCAT........................................................................................................................................................................................ 19 2 8 0.13 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AGGATGTTTTCATAAA.................................... 16 1 9 0.11 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................................CAATTTGCTCAAAGGTGATC.............. 20 3 17 0.06 1 0 0 0 0 0 0 1
........................................................................ACAGCCGAGCGCTTGG......................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0
...........................................................................................................TTCGACTCCCCTAGGGC..................................................................................................................................................................................................................................... 17 3 20 0.05 1 0 0 0 0 1 0 0
...........ACCTGCGGGGAGCGAGAC.................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

TAGACGACTGGTGGACGCCCGTCGCGCAGCCGGACGGGTTCAGCGGTAGCCATTCACAACGGGTCCTAGGTTTGTCGGCTGGCGAACATGTATCGGTCCACGTACGGAATCCGAGGGGATCTCGAGGGGAGAAGAGTACGTAAAAACGTTAATAGTTAACACGTTAATAATGGAGATTGAGAAAAAGAAAGTACATTTGTTATGGTTTATGGTTATGGTTTAGGTTATGGTTTGGTTTTTGTTTGATTGTGCGTAATAGTAGTAATTGGTTAGTTAGACTATGGTTTTAGCTTTTTATAGATCCTACTAAAGTATTTGAGTTAAACGAGTTTCCATTTCCTGTGCAAAGATAC
**************************************************((((..(((((.(((.........((((....((.(((((........))))).))....)))).....((((.....)))).....((((....))))........))).)))))..))))...................................................................................(((((.................))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.........................................................................GTCGGCTGGCGAACATGTATC................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................ACGAGTTTCCATTTCCTGTGCAAAGAT.. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAAAAAAGTACAGTTGTTAT...................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................AAGTACATTTGTTATGGTCA................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................GTATCGGTCCACGTACGGAA.................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................TGGTATTTGTTTGATTGT....................................................................................................... 18 1 3 0.33 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................TGGCTTATGGTTATGGT...................................................................................................................................... 17 1 4 0.25 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TGGCTTATGGTTATGGTTTG................................................................................................................................... 20 2 5 0.20 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................AAATTTGTTATGGTTTA................................................................................................................................................ 17 1 5 0.20 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................AAAAAAAAAGTACAGTTGTT........................................................................................................................................................ 20 2 10 0.20 2 0 2 0 0 0 0 0 0
....CGACTGGAGGACGCACGT........................................................................................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................ATGGTTATGTTTTAGGC................................................................................................................................ 17 2 20 0.15 3 0 3 0 0 0 0 0 0
.............................................................................................................................................................................................................TTGATGGTTATGGTTTAGTAT............................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................GGCTTATGGTTATGGTT..................................................................................................................................... 17 1 9 0.11 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTTTGTGGTTATGGTTTG................................................................................................................................... 20 2 9 0.11 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TCTGATGGTTTATGGTTA.......................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................CATGGTTTAGGGTTATGGTA..................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 1 0
....CGACTGGAGGACGCACGTT.......................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................TGGGTTTAGCTTTTTA........................................................ 16 1 15 0.07 1 0 0 0 0 1 0 0 0
.....................................................................................................................GATGTCGAGGGGATAAG........................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 1 0 0 0 0 0
..GGCGACTGGAGGACGCACG............................................................................................................................................................................................................................................................................................................................................ 19 3 19 0.05 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................CTATGGTTTTGGGTTATGGT...................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0
..............................................................................................................................................AAAACGTTAAGAGTT.................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0
....................................GGTTCAGCTGTAGCAA............................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................AAAGTACAGTTGTTA....................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGCTTATGGTTATGG....................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................................................................TAAAGTATTCGAGTT............................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9385154-9385506 - dsi_25687 ATCTGCTGACCACCTGCGGGCAGCGCGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCAATTGTGCAATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAAAAAC--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAA-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:1861402-1861754 - ATCTGCTGACCACCTGCGGTCAGCGCGTTGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCAATTGTGCAATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAAAAAC--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAA-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
dm3 chr3L:9627484-9627836 - ATCTGCTGACCACCTGCGGGCAGCGCGTCGGCTTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCAATTGTGCAATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AATCAAAAAC--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:9611590-9611950 - ATCTGCTGACCACCTGCGGGCAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCTA---C-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTC---------------TGCAATTGTCA--------ATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------A-AA----------------------CCAAA--------------ACCA-AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAAAATA--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGAACAAACCAA--AAATCGAAAC-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droYak3 3L:2305383-2305752 + ATCTGCTGACCACCTGTGGACAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGAATCCAA---C-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---GCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCA--------ATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------A-TA----------------------CCAATACCAAT-ACAAAAAACCA-AATACCA---AT-------------ACCAAATTCAA--TAC------CA--AACCAAAACA--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droEug1 scf7180000409711:1476949-1477282 - ATCTGCTGACCACCTGCGGACAGCGTGTTGGCCTGCCCAAATCTCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAAGATGCTC---C-----------CAGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT--------------CCAAATCCAA--TAC------CA--AACAAA------------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:8159370-8159711 + ATCTGCTGACCACCTGCGGGCAGCGTGTCGGCCTGCCCAAGTCGCCCTCGGTAAGTTATGC----------------------------------------------------------------------------------------------------------CCAAGATCATC---C-----------CCGC-CGGCCGATTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGCT-CTCC-----------------------------------------------------------------------------CCCC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTATA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAT------CA--AACCAAACCA-------AAAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droTak1 scf7180000415809:1174881-1175255 + ATCTGCTGACCACCTGCGGTCAGCGGGTCGGACTGCCCAAGTCGCCATCGGTAAGTGA-GC------------------------------------------------------------------------------------------------------CTCTCCAGGATCGTC---C-----------CAGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGCAGCTCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTATA-CAATACC-------------A-------AAAA----------------------CCAA--------------------AATACCA---AT-------------ACCAAATCCAA--TATCAA-------TACCAAAACCAA--CCAAAAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTGTTGTGCTGTATG-----------------------------------------------------------------------------------------------TATGTATG
droEle1 scf7180000490564:394190-394653 - ATCTGCTGACCACCTGCGGGCAGCGGGTCGGACTGCCCAAGTCGCCATCGGTAAGTC--GCAG-------------------------------G-----G-----------------------------------------------------------------TCCAAGATCCCCCAAC-----------CGGG-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTC---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------AAAATA--------------------CCAAA--------------ATC--AATACCA---AT-------------ACCAAATCCAA--TACCAATATCA--AACCAA------------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATG------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATGTGCCGCGTTTAGTTTTGCTTTTGTGTGATTTAGGTTCTAGCATGTAGTAGCTTTACAAAGAAAAATGAATTTGATATTTCCACGTTCACAATTATTATATATG
droRho1 scf7180000777879:66304-66641 + ATCTGCTGACCACCTGCGGGCAGCGTGTTGGTCTGCCCAAATCGCCATCGGTAAGTGATGC--------CCA-----------------------------------------------------------------------------------------------CCAAGATCCCC---T-----------CAGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCT-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAA------------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATG------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droFic1 scf7180000453807:766060-766430 - ATCTGCTGACCACCTGCGGCCAGCGTGTCGGTCTGCCCAAATCGCCCTCGGTAAGTGTTGC--------------------------ATT-GA-T-----GAA-----------------------------------------------------------------CAG-----TC---C-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TTC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTCT---------------CGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------AA------------------------CCAA-ACCAAACCAACCAAACCAAAATACCA---ATACC----------ACCAAATCCAATCTAC------CA--AACCAAAAA---------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droKik1 scf7180000302486:2052703-2053063 + ATCTGCTGACCACCTGCGGGCAGCGCGTGGGCCTGCCCAAGTCGCCATCGGTAAGTGATTC-----------------------------AGA-G-----GAG-----------------------------------------------------------------GAGGATCCTT---C-----------ACGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGCTCCTCC-----------------------------------------------------------------------------CCTCTTCTT---------CTCAT------------------------GCATT-----------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATATCAAA-------ACCA---------------------------------------------------------AATACCA---AA-------------ACCAAATCCAA--TAC------CA--AAACAAAA----------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------CCGAATCCGAATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:3871345-3871713 - ACCTCCTGACGACCTGCGGTCAGCGTGTGGGCCTGCCCAAGTCCCCATCGGTAAGTGCCA--T-----------------------------------------------------------------------------------------------------TCTCCAGGCTATT----------------CA---CGGCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCC---CTAGAGC---TAGA-----------------------------CCCATC-----------------------------------------CCTCCCGGT---------CTCAT------------------------GCATTTCTTAC-------C--ATGCAATTAT--------------TTTC-------CTCTA--ACTCTTTTTCTTTCATGTAAACCAATACTCAAACAAAAAACCAAAAACCAAAAA----------------------------T--------------------ACAA---A-----------------------AA--AAC------CAACAACCAAAAATAAAA----CAACTAACACGC-AT----TATCATCATTAACCAA-----------------------TCCGA---AACCAA--AAATCGAAAC-------ATA------------TCTAGGACGATTTCATAAATTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
droBip1 scf7180000395450:3792-4171 - ACCTGCTGACCACCTGCGGCCAGCGTGTGGGCCTGCCCAAGTCGCCATCGGTAAGTGCCAC---------------------------------------------------------------------------------------------------------TCCAGGCTAC-----C-----------CA---CGGCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCC---CTAGAGC---TAGC-----------------------------CCCGTC-----------------------------------------CCTCCCGGT---------CTCAT------------------------GCATTTCTTAC-------C--ATGCAATTAT--------------TTTC-------CTCTA--ACTCTTTTTCTTTCATGTAAACCAATACTCAA-------ACCAAATACCAAAAA----------------------------T-----ACAAAAAACCAAAAAACCG---A-ACA----------ACCAA-----A--AAC------CA--AACCAAAAATAAAA----CAACTAACACGC-AT----TATCATCATTAACCAA-----------------------TCCGA---TACCAA--AAATCGAAAA-------ATA------------TCTAGGACGATTTCATAAATTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------
dp5 XR_group8:8595853-8596260 + ACCTGCTGACCACCTGTGGCCAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGT-------------------------GTGCTTCGAAGG-----GAGCT------------------------------------------GGAG-----------CTGC----------TTCA---GCATTC-----GGC-T-GCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TATC-----------------------------CTAATC-----------------------------------------CCTCTC-TA----CTGTA-CTCTACTC---TCTGATGTGGCCTTCATGCATA-----------------TGCGATTAT--------------TTAT-------TTCTA--ACTCTTTTTCTTTCATGTAAAACAAAAC--------------A-------AAAA----------------------TCAAAAT-------------------------------------------CCAAACCAAA--AAC------CAAAAACCAAAA-C--------CAATTAACACGCCAT----TATCATCATTAACCAAT-----------C--AAACCAAAT-CGA---TACCA----AATCGAAAC-------ATACTCGTACTCAATCCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------CTG-------------------------------------------------------------------------------------------------------
droPer2 scaffold_40:803761-804175 + ACCTGCTGACCACCTGTGGCCAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGT-------------------------GTGCTTCGAAGG-----GAGCT------------------------------------------GGAG-----------CTGC----------TTCA---GCATTC-----GGC-T-GCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TATC-----------------------------CTAATC-----------------------------------------CCTCTC-TA----CTGTA-CTCTACTC---TCTGATGTGGCCTTCATGCATA-----------------TGCGATTAT--------------TTAT-------TTCTA--ACTCTTTTTCTTTCATGTAAAACAAAACAAAA-------ATCAA-------AAA----------------------TCAAAAT-------------------------------------------CCAAACCAAA--AAC------CAAAAACCAAAA-C--------CAATTAACACGCCAT----TATCATCATTAACCAAT-----------C--AAACCAAAT-CGA---TACCA----AATCGAAAC-------ATACTCGTACTCAATCCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------CTG-------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:9943656-9944196 + dwi_718 ATCTGTTGACCACATGTGGACAGCGTGTTGGTCTACCCAAGTCTCCATCGGTAAGTATAGAAGGAATCTTCACGATTAGAATTACGATTCGAATGATGATGAGAAGAAGAAGGAGGAGAAGATGGAAGAGGAGGCGACGGTGGAGGAGGAGAAGATGTGCCCCCTC----------T---------------------TCACAGCTTGTACA-TAGCCAAGAGCATGCCTTAGGCTACCCACTAGAGC---TAACAGCAGCCCACCACCCAACCCACCCAAACCCCCTTCCCTTTACCCCACACCCCACCAACAACTTCACCCAATTCCCACCAC---TTTTTATTCTTCCTCTGCTC---TCT---------CTC----ATCTCTCTCAAAATAGCATACGAAATTAT--------------TTATATTACTATTCTAATACTTTTTTTCTTTCATGTAAA---ATACC-------------A---------------------------------------------------------AAAACCA---AA--------------------------AAA------CT--AACAAAAAA-----------AAAAA----C-AT-C--CATCATCATTAACCAAAAAAAAAACAAAA--A------ATCCGA---AACCAAAAAAATTGAAATTAAACCAATT------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACA------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:10340538-10340934 + dvi_19355 ATCTATTGACCACCTGTGGACAGCGTGTCGGTCTGCCCAAGTCGCCATCGGTAAGTTT-GC-GG-----CCACA-----------------AA-----------------------------------------------------------------------------GACTGCGG--CCAGGGGTCGACATATT-TGTCAGCCTGTACATTAGCAAGGTGCATGCTTTGAGCTCCC--CTAGCGC---TAG-----------------------------------------------------------------------------CTTT---TT------CAGCTCCTGCTT---ACTAATAAGGCCATC----ATCTC-------------TACAAAATTAT--------------TTAT-------TTCTA--CTTCTTTTTCTTTCATGTAAAAAAATACA-------------A-----------------CTAAATTGAAACCAAATCAAACT--------------C--GAAAAAA---AA--------AACAAACCAAACCCAA--TGT------CA--AACTA-------------AAACTAACACGCCATTT--TATCATCATTAACAA------------------------CCCGA----ACCAA----------AC-------CCA----------ATTATAGGATGATTTTCTAAACTCTATTTGCTCAAAGGTAAAGGAACATGTTTCT-------CAA-------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:10444712-10445094 - ATCTGTTGACCACCTGTGGACAGCGGGTCGGCTTGCCCAAGTCGCCATCGGTAAGTTT--CTGG-----CCACAC--------GGGGTTCGAAAG-----GG-----------------------------------------------------------------------------------G---------GT-TTCCAGCTTGTACATTAGCCAGGTGCATGCTTTGAGCTCCC--CTAGCGC---TAG-----------------------------------------------------------------------------CTTT---TT------CAGCTCCTGCTT---TCTAATATGGCCATC----ATCTC-------------TACCAAATTAT--------------TTAT-------TTCTG--ATTCTTTTTCTTTCATGTAAC--AA-AC--------------A-------AAAATATAAACTAAAT-----------------------TATAA-ATC--AATGTTGATAT------------AAACCAATTCCAA--TAT------CA--AACCAA-------------ATCTAACACGCCATTA--TATCATCATTAACAA------------------------CCCGA----ACCAA----------AC-------CTA----------ATTATAGGACGATTTTCTAAACTCTATTTGCTCAAAGGTAAAAGAACATGTTTCT-------AAA-------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:8909187-8909604 - ATCTATTGACCACCTGTGGCCAGCGTGTTGGTCTGCCCAAATCGCCATCGGTAAGTT--GCTGG-----TCATGGTC---ATTGTGCTCT------------------------------------------------------------------------------------GCGG--TCCGGGGTCGG--CAGTTTGTCAGCTTGTACATTAGCAAGGTGCATGCTTTGAGCTCCC--CTAGCGC---TAG-----------------------------------------------------------------------------CTTT---TT------CAGCTCCTGCTTTTCTCTAATATGGCCATCATCTAT-----------------ACGAATTTAT--------------TTAT-------TTCTA--CTTCTTTTTCTTTCATGAAAA-AAAAACC-------------A-------AAAA----------------------TGAAAACAAAA-ACAAAAAACCAAAAT---GAAATTAATACAAAATCAAATCGAATCCAA--TGT------CA--AACTA-------------AAACTAACACGCCATTATATATCATCATTAACAA------------------------CCCGA----ACCAA----------AC-------CTA----------ATTATAGGACGATTTCATAAACTCTATTTGCTCAAAGGTAAAGGAACATGTTTCT-------AAC-------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATCTGCTGACCACCTGCGGGCAGCGCGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCAATTGTGCAATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAAAAAC--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAA-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................TAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTTCATAAACTC................................................................................................................................................1811.00101000000000000000
.............CTGCGGGCAGCGCGTCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..................................................................................................................................................................................................................................................TAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
droSec2
ATCTGCTGACCACCTGCGGTCAGCGCGTTGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCAATTGTGCAATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAAAAAC--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAA-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............TGCGGTCAGCGCGTTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
ATCTGCTGACCACCTGCGGGCAGCGCGTCGGCTTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCAATTGTGCAATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AATCAAAAAC--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................TTGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21111.001100000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAC-------CTCTA--ACTCTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CCAGGATCCAA---A-----------CAGC-CGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......GACCACCTGCGGGCAGCGCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAT-----------C--A------ATCTGA---TACCAA---.....................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------AAACTAACACGC-AT----TATCAT.......................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-------CTCTA--ACTCTTTTTCTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTCAAAGGTAAAGG-...........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCAAAGGTAAAGG-ACACGTT....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTTTTTCTTTCATGTAAA-...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCAAAGGTAAAGG-ACACGTTTC..................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAATTTGCTCAAAGGTA................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GACCACCTGCGGGCAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCTGCTGACCACCTGCGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCTGCGGGCAGCGCGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................AAGTCGCCATCGGTAAGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGGTAAAGG-ACACGTTTC..................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............CCTGCGGGCAGCGCGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGCCCAAGTCGCCATCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TGC----------------------------------------------------------------------------------------------------------CCAGGATCCAA---A-----------CAGC-CGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GACCACCTGCGGGCAGCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..CTGCTGACCACCTGCGGGCAGCGCGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACTCAATTTGCTCAAAGGT.................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
......TGACCACCTGCGGGCAGCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CCTGCGGGCAGCGCGTCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....GCTGACCACCTGCGGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................T------------------------GCATTTT---------------TGCAATTATCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCAAAGGTAAAGG-ACACG......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGACCACCTGCGGGCAGCGCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--ACTCTTTTTCTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATCTGCTGACCACCTGCGGGCAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGGATCCTA---C-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTC---------------TGCAATTGTCA--------ATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------A-AA----------------------CCAAA--------------ACCA-AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAAAATA--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGAACAAACCAA--AAATCGAAAC-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ATCTGCTGACCACCTGTGGACAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAGAATCCAA---C-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---GCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTATCA--------ATTATTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------A-TA----------------------CCAATACCAAT-ACAAAAAACCA-AATACCA---AT-------------ACCAAATTCAA--TAC------CA--AACCAAAACA--------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCTGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..CTGCTGACCACCTGTGGACAGCGTGTCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3017.00700000000007
..........................GTCGGCCTGCCCAAGTCGCCATCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000000003
............................CGGCCTGCCCAAGTCGCCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACC-------------A-------A-TA----------------------CCAATACCAAT-.................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACC-------------A-------A-TA----------------------CCAATACCAAT-A................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACC-------------A-------A-TA----------------------CCAATACCAAT-.................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEug1
ATCTGCTGACCACCTGCGGACAGCGTGTTGGCCTGCCCAAATCTCCATCGGTAAGTGTTGC----------------------------------------------------------------------------------------------------------CCAAGATGCTC---C-----------CAGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT--------------CCAAATCCAA--TAC------CA--AACAAA------------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATCTGCTGACCACCTGCGGGCAGCGTGTCGGCCTGCCCAAGTCGCCCTCGGTAAGTTATGC----------------------------------------------------------------------------------------------------------CCAAGATCATC---C-----------CCGC-CGGCCGATTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGCT-CTCC-----------------------------------------------------------------------------CCCC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTATA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAT------CA--AACCAAACCA-------AAAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATCTGCTGACCACCTGCGGTCAGCGGGTCGGACTGCCCAAGTCGCCATCGGTAAGTGA-GC------------------------------------------------------------------------------------------------------CTCTCCAGGATCGTC---C-----------CAGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGCAGCTCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTATA-CAATACC-------------A-------AAAA----------------------CCAA--------------------AATACCA---AT-------------ACCAAATCCAA--TATCAA-------TACCAAAACCAA--CCAAAAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTGTTGTGCTGTATG-----------------------------------------------------------------------------------------------TATGTATGSizeHit CountTotal NormTotal
No Reads
droEle1
ATCTGCTGACCACCTGCGGGCAGCGGGTCGGACTGCCCAAGTCGCCATCGGTAAGTC--GCAG-------------------------------G-----G-----------------------------------------------------------------TCCAAGATCCCCCAAC-----------CGGG-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTC---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------AAAATA--------------------CCAAA--------------ATC--AATACCA---AT-------------ACCAAATCCAA--TACCAATATCA--AACCAA------------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATG------------TCTAGGATGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATGTGCCGCGTTTAGTTTTGCTTTTGTGTGATTTAGGTTCTAGCATGTAGTAGCTTTACAAAGAAAAATGAATTTGATATTTCCACGTTCACAATTATTATATATGSizeHit CountTotal NormTotal
No Reads
droRho1
ATCTGCTGACCACCTGCGGGCAGCGTGTTGGTCTGCCCAAATCGCCATCGGTAAGTGATGC--------CCA-----------------------------------------------------------------------------------------------CCAAGATCCCC---T-----------CAGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TCT-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTTT---------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A---------------------------------------------------------AATACCA---AT-------------ACCAAATCCAA--TAC------CA--AACCAA------------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATG------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATCTGCTGACCACCTGCGGCCAGCGTGTCGGTCTGCCCAAATCGCCCTCGGTAAGTGTTGC--------------------------ATT-GA-T-----GAA-----------------------------------------------------------------CAG-----TC---C-----------CAGC-CGACCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TTC-----------------------------------------------------------------------------CCTC---TT---------CTCAT------------------------GCATTCT---------------CGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATACC-------------A-------AA------------------------CCAA-ACCAAACCAACCAAACCAAAATACCA---ATACC----------ACCAAATCCAATCTAC------CA--AACCAAAAA---------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------C--A------ATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATCTGCTGACCACCTGCGGGCAGCGCGTGGGCCTGCCCAAGTCGCCATCGGTAAGTGATTC-----------------------------AGA-G-----GAG-----------------------------------------------------------------GAGGATCCTT---C-----------ACGC-CGGCCGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGCTCCTCC-----------------------------------------------------------------------------CCTCTTCTT---------CTCAT------------------------GCATT-----------------TGCAATTAT--------------TTAC-------CTCTA--ACTCTTTTTCTTTCATGTAAA-CAATATCAAA-------ACCA---------------------------------------------------------AATACCA---AA-------------ACCAAATCCAA--TAC------CA--AAACAAAA----------AAACTAACACGC-AT----TATCATCATTAACCAAT-----------CCGAATCCGAATCCGA---TACCAA---AATCGAAAC-------ATA------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ACCTCCTGACGACCTGCGGTCAGCGTGTGGGCCTGCCCAAGTCCCCATCGGTAAGTGCCA--T-----------------------------------------------------------------------------------------------------TCTCCAGGCTATT----------------CA---CGGCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCC---CTAGAGC---TAGA-----------------------------CCCATC-----------------------------------------CCTCCCGGT---------CTCAT------------------------GCATTTCTTAC-------C--ATGCAATTAT--------------TTTC-------CTCTA--ACTCTTTTTCTTTCATGTAAACCAATACTCAAACAAAAAACCAAAAACCAAAAA----------------------------T--------------------ACAA---A-----------------------AA--AAC------CAACAACCAAAAATAAAA----CAACTAACACGC-AT----TATCATCATTAACCAA-----------------------TCCGA---AACCAA--AAATCGAAAC-------ATA------------TCTAGGACGATTTCATAAATTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............CTGCGGTCAGCGTGTGGGCCTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---A-----------------------AA--AAC------CAACAACCAAAAA.........................................................................................................................................................................................................................................................................................2011.001010000
....................CAGCGTGTGGGCCTGCCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................CTGCCCAAGTCCCCATCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAAAACCAAAAACCA.......................................................................................................................................................................................................................................................................................................................................................................................................2030.331010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACCAAAAACCAAAAA----------------------------.......................................................................................................................................................................................................................................................................................................................................................................20140.142020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCAAAAACCAAAAA----------------------------T--------------------T.................................................................................................................................................................................................................................................................................................................................................21120.081010000
droBip1
ACCTGCTGACCACCTGCGGCCAGCGTGTGGGCCTGCCCAAGTCGCCATCGGTAAGTGCCAC---------------------------------------------------------------------------------------------------------TCCAGGCTAC-----C-----------CA---CGGCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCC---CTAGAGC---TAGC-----------------------------CCCGTC-----------------------------------------CCTCCCGGT---------CTCAT------------------------GCATTTCTTAC-------C--ATGCAATTAT--------------TTTC-------CTCTA--ACTCTTTTTCTTTCATGTAAACCAATACTCAA-------ACCAAATACCAAAAA----------------------------T-----ACAAAAAACCAAAAAACCG---A-ACA----------ACCAA-----A--AAC------CA--AACCAAAAATAAAA----CAACTAACACGC-AT----TATCATCATTAACCAA-----------------------TCCGA---TACCAA--AAATCGAAAA-------ATA------------TCTAGGACGATTTCATAAATTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------ATG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACCTGCTGACCACCTGTGGCCAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGT-------------------------GTGCTTCGAAGG-----GAGCT------------------------------------------GGAG-----------CTGC----------TTCA---GCATTC-----GGC-T-GCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TATC-----------------------------CTAATC-----------------------------------------CCTCTC-TA----CTGTA-CTCTACTC---TCTGATGTGGCCTTCATGCATA-----------------TGCGATTAT--------------TTAT-------TTCTA--ACTCTTTTTCTTTCATGTAAAACAAAAC--------------A-------AAAA----------------------TCAAAAT-------------------------------------------CCAAACCAAA--AAC------CAAAAACCAAAA-C--------CAATTAACACGCCAT----TATCATCATTAACCAAT-----------C--AAACCAAAT-CGA---TACCA----AATCGAAAC-------ATACTCGTACTCAATCCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------CTG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............GTGGCCAGCGTGTCGGCCTGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTCATGCATA-----------------TGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................GGCCAGCGTGTCGGCCTGCCCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGATTTCATAAACTCAATTT...........................................................................................................................................2311.0010100000000
droPer2
ACCTGCTGACCACCTGTGGCCAGCGTGTCGGCCTGCCCAAGTCGCCATCGGTAAGTGT-------------------------GTGCTTCGAAGG-----GAGCT------------------------------------------GGAG-----------CTGC----------TTCA---GCATTC-----GGC-T-GCTGCTTGTACA-TAGCCAGGTGCATGCCTTAGGCTCCC--CTAGAGC---TATC-----------------------------CTAATC-----------------------------------------CCTCTC-TA----CTGTA-CTCTACTC---TCTGATGTGGCCTTCATGCATA-----------------TGCGATTAT--------------TTAT-------TTCTA--ACTCTTTTTCTTTCATGTAAAACAAAACAAAA-------ATCAA-------AAA----------------------TCAAAAT-------------------------------------------CCAAACCAAA--AAC------CAAAAACCAAAA-C--------CAATTAACACGCCAT----TATCATCATTAACCAAT-----------C--AAACCAAAT-CGA---TACCA----AATCGAAAC-------ATACTCGTACTCAATCCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACACGTTTCT-------CTG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATCTGTTGACCACATGTGGACAGCGTGTTGGTCTACCCAAGTCTCCATCGGTAAGTATAGAAGGAATCTTCACGATTAGAATTACGATTCGAATGATGATGAGAAGAAGAAGGAGGAGAAGATGGAAGAGGAGGCGACGGTGGAGGAGGAGAAGATGTGCCCCCTC----------T---------------------TCACAGCTTGTACA-TAGCCAAGAGCATGCCTTAGGCTACCCACTAGAGC---TAACAGCAGCCCACCACCCAACCCACCCAAACCCCCTTCCCTTTACCCCACACCCCACCAACAACTTCACCCAATTCCCACCAC---TTTTTATTCTTCCTCTGCTC---TCT---------CTC----ATCTCTCTCAAAATAGCATACGAAATTAT--------------TTATATTACTATTCTAATACTTTTTTTCTTTCATGTAAA---ATACC-------------A---------------------------------------------------------AAAACCA---AA--------------------------AAA------CT--AACAAAAAA-----------AAAAA----C-AT-C--CATCATCATTAACCAAAAAAAAAACAAAA--A------ATCCGA---AACCAAAAAAATTGAAATTAAACCAATT------------TCTAGGACGATTTCATAAACTCAATTTGCTCAAAGGTAAAGG-ACA------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............CATGTGGACAGCGTGTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
.............ATGTGGACAGCGTGTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
............CATGTGGACAGCGTGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................GAAGGAGGAGAAGATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCAAAGGTAAAGG-AC.........................................................................................................................1911.00100010
.......................................................................................................AAGAAGAAGGAGGAGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1961.00600330
......................................................................................................GAAGAAGAAGGAGGAGAAGATGGAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
........................................................................................................AGAAGAAGGAGGAGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.88700052
droVir3
ATCTATTGACCACCTGTGGACAGCGTGTCGGTCTGCCCAAGTCGCCATCGGTAAGTTT-GC-GG-----CCACA-----------------AA-----------------------------------------------------------------------------GACTGCGG--CCAGGGGTCGACATATT-TGTCAGCCTGTACATTAGCAAGGTGCATGCTTTGAGCTCCC--CTAGCGC---TAG-----------------------------------------------------------------------------CTTT---TT------CAGCTCCTGCTT---ACTAATAAGGCCATC----ATCTC-------------TACAAAATTAT--------------TTAT-------TTCTA--CTTCTTTTTCTTTCATGTAAAAAAATACA-------------A-----------------CTAAATTGAAACCAAATCAAACT--------------C--GAAAAAA---AA--------AACAAACCAAACCCAA--TGT------CA--AACTA-------------AAACTAACACGCCATTT--TATCATCATTAACAA------------------------CCCGA----ACCAA----------AC-------CCA----------ATTATAGGATGATTTTCTAAACTCTATTTGCTCAAAGGTAAAGGAACATGTTTCT-------CAA-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................TCGGTCTGCCCAAGTCGCCATCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000002
..................................................GTAAGTTT-GC-GG-----CCACA-----------------AA-----------------------------------------------------------------------------GACTGCGG--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATTTTCTAAACTCTATTTGC.........................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..CTATTGACCACCTGTGGACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAACTCTATTTGCTCAA.....................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGGATGATTTT........................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000000001000000
....ATTGACCACCTGTGGACAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------AACAAACCAAACCCAA--T..............................................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
................................CTGCCCAAGTCGCCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
................................CTGCCCAAGTCGCCATCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000001000000000000000000000000000
droMoj3
ATCTGTTGACCACCTGTGGACAGCGGGTCGGCTTGCCCAAGTCGCCATCGGTAAGTTT--CTGG-----CCACAC--------GGGGTTCGAAAG-----GG-----------------------------------------------------------------------------------G---------GT-TTCCAGCTTGTACATTAGCCAGGTGCATGCTTTGAGCTCCC--CTAGCGC---TAG-----------------------------------------------------------------------------CTTT---TT------CAGCTCCTGCTT---TCTAATATGGCCATC----ATCTC-------------TACCAAATTAT--------------TTAT-------TTCTG--ATTCTTTTTCTTTCATGTAAC--AA-AC--------------A-------AAAATATAAACTAAAT-----------------------TATAA-ATC--AATGTTGATAT------------AAACCAATTCCAA--TAT------CA--AACCAA-------------ATCTAACACGCCATTA--TATCATCATTAACAA------------------------CCCGA----ACCAA----------AC-------CTA----------ATTATAGGACGATTTTCTAAACTCTATTTGCTCAAAGGTAAAAGAACATGTTTCT-------AAA-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAACTCTATTTGCTCAAA....................................................................................................................................2011.001100000
droGri2
ATCTATTGACCACCTGTGGCCAGCGTGTTGGTCTGCCCAAATCGCCATCGGTAAGTT--GCTGG-----TCATGGTC---ATTGTGCTCT------------------------------------------------------------------------------------GCGG--TCCGGGGTCGG--CAGTTTGTCAGCTTGTACATTAGCAAGGTGCATGCTTTGAGCTCCC--CTAGCGC---TAG-----------------------------------------------------------------------------CTTT---TT------CAGCTCCTGCTTTTCTCTAATATGGCCATCATCTAT-----------------ACGAATTTAT--------------TTAT-------TTCTA--CTTCTTTTTCTTTCATGAAAA-AAAAACC-------------A-------AAAA----------------------TGAAAACAAAA-ACAAAAAACCAAAAT---GAAATTAATACAAAATCAAATCGAATCCAA--TGT------CA--AACTA-------------AAACTAACACGCCATTATATATCATCATTAACAA------------------------CCCGA----ACCAA----------AC-------CTA----------ATTATAGGACGATTTCATAAACTCTATTTGCTCAAAGGTAAAGGAACATGTTTCT-------AAC-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:05 PM