ID:

dsi_25656

 Coordinate:

3r:19876810-19877067 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.3 -14.3 -14.1 -13.5

Flybase annnotation

exon [3r_19877068_19878058_+]; CDS [3r_19877068_19877219_+]; exon [3r_19876662_19876809_+]; CDS [3r_19876662_19876809_+]; intron [3r_19876810_19877067_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGTGATCATCATTGTTCGGGGACTTTAGTCGGAGATAAACCTTGTTTATTTGGAGAACAACCACGTTGCACCCTTGTACTCGGTGATTTTGCCTACCGATAAGCTGTCGGCAAGTGAAAGCTGACAACCAGATTTAATTTCAACTCGGAAAATGCGCATTTGAAAATAATCAATAATCAATACCGAGAATGAAACTACCTATGCACGACACCCGCTTCTAATGAATTGATTAATCATTATTGATTACGTTTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
****************************************************************************************************************************************************************.................((...((...((.(((((.(((((...........((((......)))).........)))))..))))).)).)).))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 O002
Head
 M023
head
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
...................................................................................................TATTTGGAGAACCATCATGTTG............................................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................CGAGAATGAAACTACCTATG...................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................................................................................................CGGCAAGTGAAAGCTGACAACC................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0
....ACGCTCTTCTCGGCGCCCA............................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................GATCATCATTGTTCGGGGACT......................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
AGTGACGCTCTTCTCGGCGCC................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................TTTTGCCTACCGATAAGCTGT...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................................ATGTCCGTGGACGACAC......................... 17 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................TATTTGGAGAACCAGCATGTTG............................................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................CTGGAGAACAACCAGGTTG............................................................................................................................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ATGATTTCCGTGGACGACA.......................... 19 1 3 0.33 1 0 0 0 0 0 1 0 0
...........................................AACGCGGGGAAGTGA............................................................................................................................................................................................................................................................................................................ 15 1 6 0.17 1 0 0 0 0 0 0 1 0
.........................................ACAACGCGGGTTGGTGACC.......................................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 1
..........................................................................ACTCTAGTTGGAGGTAAAC......................................................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0
........................................................................................................................................TGATGTTGCCTACCGGGAA........................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................AGCTGTCGGGGAGTGA............................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0
......................................................GAGATCATCATTGTT................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCACTGCGAGAAGAGCCGCGGGTTGATGACGCCCCTCAAGCTGTTGCGCCCATTCACTAGTAGTAACAAGCCCCTGAAATCAGCCTCTATTTGGAACAAATAAACCTCTTGTTGGTGCAACGTGGGAACATGAGCCACTAAAACGGATGGCTATTCGACAGCCGTTCACTTTCGACTGTTGGTCTAAATTAAAGTTGAGCCTTTTACGCGTAAACTTTTATTAGTTATTAGTTATGGCTCTTACTTTGATGGATACGTGCTGTGGGCGAAGATTACTTAACTAATTAGTAATAACTAATGCAAACGTCCACGGTACTACAGGCACCTGCTGTGTAACTACACGAGGAAGGTCTATAAC
******************************************************************************************************.................((...((...((.(((((.(((((...........((((......)))).........)))))..))))).)).)).))**************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................................TCGACTGTTGGTCTAAATTAA...................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................AGGCACCTGCTGTGTAACTAC.................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................TTCGACTGTTGGTCTAAATTA....................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................ACAGGCACCTGCTGTGTAACT.................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................TTCACTAGTAGTAACAAGCC.............................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................AGAGTTGAGCCTTTTACGCAT................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................GCGACTCTTGGTCTAAATTAA...................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...............................................GCCCATTCACTAGTAGTA..................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...................................................ATTCACTAGTAGTAACTA................................................................................................................................................................................................................................................................................................. 18 1 3 0.33 1 0 0 0 0 1 0
.....................................................TCACTAGTAGTAACAT................................................................................................................................................................................................................................................................................................. 16 1 7 0.14 1 0 0 0 1 0 0
....TACGAGAAGAGCCGCG.................................................................................................................................................................................................................................................................................................................................................. 16 1 8 0.13 1 0 0 0 1 0 0
........................................................................................................................................................................................................................................................ATGGTAACTTGCTGTGGGCG.......................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0
.............................................................................................................................................................................................GAAAGTTGAGCCTAGTACGC..................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................................TTAGGGCTCGTACTTTGA............................................................................................................. 18 2 14 0.07 1 0 0 0 1 0 0
.........................................................................................................................................................................................AAACTAATGTTGAGCCTT........................................................................................................................................................... 18 2 18 0.06 1 0 0 0 1 0 0
...................................................ATTCACGAGTAGTAA.................................................................................................................................................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................AGTTATGGCTGTTCCCTTG.............................................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0
.......................................................................................................................................AACTAACACGGATGGC............................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................TGGATACGAGGTGTGGCC........................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19876760-19877117 + dsi_25656 AGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GATCA-------TCATTGTTC-----------------GGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACAACC---------------------------------------------------ACGTTGCACCCT------------------------TGTACTCGGTGATTTTGCCTACCGATAAGCT--------------------GTCGGCAAGTGAA-AGCTGAC--------------AACCAGATTTAATTTC-------AACT--------------------------CGGAAAATGCGCATTTGAA--------A-ATAATCAATAATCAA---------TACCGAGAATGAAAC-TACCTATGCACGACA--C-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTAC-GT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droSec2 scaffold_0:20681668-20682025 + AGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GATCA-------TCATTGTTC-----------------GGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACAACC---------------------------------------------------GCGTTGCACCCT------------------------TGTACTCGGTGATTTTGCCTACCGATAAGCT--------------------GTCGGCAAGTGAA-AGCTGAC--------------AACCAGATTTAATTTC-------AACT--------------------------CGGAAAATGCGCATTTGAA--------A-ATAATCAATAATCAA---------TACCGAGAATGAAAC-TACCTATGCACGACA--C-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTAC-GT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
dm3 chr3R:20345760-20346114 + GGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAATTCGACAACGCGGGTAAGT-GATCA-------TTGT---TC-----------------GGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACAACC---------------------------------------------------ACGTTGCACCCT------------------------TGTACTCGGTGATTTTGCCTGCCGATAAGCT--------------------GTCGGCAAGTGAA-AGCTGGC--------------AACCAGATTTAAATTC-------AACT--------------------------CGGAAAATGCGCATTTAAA--------A-ATAATCAATAATCAA---------TACCGAGAATGAAAC-TACCTATGCACGACA--C-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTAC-GT------TTACAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droEre2 scaffold_4820:7710736-7711092 - GGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GTTCA-------TCAT---GC-----------------GAGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----GTTT-GGA----------------------------------GAATAGCC---------------------------------------------------ATGAAGCACCCT------------------------TGTACTGTATGATTTTACCTACCGATAACCT--------------------GTCGGCAAGTGAA-AGCTGGC--------------AACCAGATTTAATTTC-------CACT--------------------------CGGAAAATGCGCATTTTAA--------A-ATAATCAATAATCAA---------TACCGAGAATGGCAC-AACTCATAAACGACAATC-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTGC-GT------TTACAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droYak3 3R:26153255-26153611 - GGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GTTCA-------TCGT---TC-----------------AGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAATAACG---------------------------------------------------ATGATGCACCCT------------------------TGTACTGTATGATTTTGCCTGCCGATAACCT--------------------GTTGGCAAGTGAA-AGCTGGC--------------AACCAGATTTCATTTC-------CACT--------------------------CGGAAAATGCGCATTTTAG--------A-ATAATCAATAATCAA---------TACCGAGAATAGCACAAACCCATAAACGACA--AACCGCTTCTAATG-AATTGATTAAT-GATTATTGATTAC-GT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droEug1 scf7180000409881:67911-68263 + AGTGACGCTGTTCTCAGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTGAGT-GATCG-TCATCATAAT---TC-----------------CCGGACTTTAGTC-GGAGATAAAC----------------GTTGTTT-----ATTT-GGA----------------------------------GAATG---------------------------------------------------------------CCT------------------------TGTAATCGTTGATTATGACAACCGATAACCCGCCTGC------------CTGCCGGCAAGTGAA-AGCTGGC--------------AACCAGACCTAATTTC-------CTCT--------------------------CGGAAAATGCGCATTTTAA--------A-ATAATCAATAA-------------TGCCGAGAATAGACA-TGCCCATAAATGTCA--C-TCGATTCCAATG-AATTGATTAAT-CATTATCGATTAC-GT------TTATAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droBia1 scf7180000302136:722671-723009 + GGTCACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTAAGT-GATCA-------TTAT---CC-----------------GCGGACTTTAGTC-GGAGATAA--------------------TGTTT-----ATTT-GGA----------------------------------GAATG---------------------------------------------------------------CCT------------------------CGTAATCATTGATTT----AACCGATAACCTGC-----------------CGCCGGCAAATGAA-TGCCGGC--------------AACCAGATTTAATTTC-------CACT--------------------------CGGAAAATGCGCATTTCAA--------A-ATAATCAAAAATCAA---------TACCGAGAATAGAAC-TGTCCATA-ATGTCA--C-TCGCCCCCGCTGAAAATGATTAAT-CACTATCGATTACGAT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droTak1 scf7180000415769:2052134-2052505 - GGTGACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTGAGT-GATCA-ACGTGATCAT---CC-----------------GCGGACTTTAGTC-GGCGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACGACTACG--------------------------------------------------GGAGCACCCT------------------------TGTAATCGTTGACTT----AACCGATAACCT--------------------GCCGGCAAGTGAA-AGCTGGC--------------AGCCACATTTAATTTC-------CACT----------------------CG--CGGAAAATGCGCATTTTAA--------AAATAATCAATAATCAGTGGCGGGAATACCGAGAATAGAAC-TGCCCATAAATGTCA--CCTCGCTTGCTCCG-AACTGATTAAT-CATTATCGATTTCGTT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droEle1 scf7180000491047:439498-439847 - GGTTACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTCGACAATGCGGGTGAGT-GATGA-------TCAT---GC-----------------GCGGACTTTAGCC-GGAGATTAAC----------------TTTGTTT-----ATTT-GGG----------------------------------CAAGGCTT---------------------------------------------------ATGAAGCACCCT------------------------TGTAATCGTTGAATT----AAGCGATAAGCT--------------------GCCGGCAAGTGAA-AGCTGAC--------------AGCCACATTAAATTTC-------CACA--------------------------TTGAAATTGCGCCTCTTAA--------A-ATAATCAATAAT-AA---------TACCTAGAATATAGC-GGACAATTATTGTCT--C-TCGCTTCCGCAA-AATTGATTAAT-TATTATCGATTAC-AT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTTCAGATATTG
droRho1 scf7180000764153:19631-19981 + GGTGACTCTCTTTTCGGCGCCCAATTATTGCGGGGAGTTCGACAATGCGGGTGAGT-GATGA-------TCAT---CC-----------------GCGGACTTTAGCC-GGAGATAAAC----------------TTTGTTT-----ATTT-GAA----------------------------------GAAGGCTG---------------------------------------------------GTGAAGCAGCCT------------------------TGTAATCGTTGATTT----CCGTGATAACCT--------------------GCCGGCAAGTGAA-AGCTGAC--------------AGACAGATTGAATTTC-------CACT--------------------------CTGAAATTGCGCATTTTAA--------A-ATAATCAATAATCAA---------TACCGAGAATAGAAC-TGCCCATAAATGTCA--C-TTGCTTCCACTG-AATTGATTAAT-CATTATCGATTAC-GT------TTCCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droFic1 scf7180000453912:1532902-1533256 + GGTGACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTGAGT-GATGAGTGATGATCAG---CT-----------------GCGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAATGCCC---------------------------------------------------A---AAGACCCT------------------------TGGAATCGTTGATCA----GTGCGATAACCG--------------------GCCGGCAAATAAA-AGCTGCC--------------AGCCCGGTTGCATTTC-------CATG--------------------------CGGGAAATGCGCATTTAAA--------A-ATAATCAATAATCAA---------TACCGGGAATAGAGC-AGCCCATAAATGTCA--C-TCCCTTCCCTAG-AAGTGATTAAT-CATTATCGATTTC-GC------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTG
droKik1 scf7180000302387:256419-256797 + GGTCACGCTCTTCTCGGCGCCTAACTATTGCGGGGAATTTGACAATGCGGGTGAGT-GATCA-------TCGA---CG-----------------ATGGACTTCAGTCCGGAGATAAAC----------------ATTATCTCGACAC-------------------------------------------------AAGGCACCCTTTACGGTCGTCTATAAATATAAAAATAAACACGG-----------A-------------------------------GGTCAACGTTGATCT----CGGAGATAGGCC--------------------AGAAGCAAGTGAA-AGCTAGC--------------AACCAGATTCCATTGC-------CATTTCCATTCCCGTTTATTTCCACTTACCAAGAAAATGCGCACTTTAA--------A-A-----AATAATCAA---------TAGCGGGAATCG-------CCATAAATGTCA---------------G-CAATGATTAAT-CATTATCGATTGG-CT------TTGCAGGTGCCATGATGTCCGTGGACGACACACTGATGTGCTCCTTCCAGATATTG
droAna3 scaffold_13088:389586-389919 + GGTGACGCTCTTCTCAGCGCCCAACTATTGCGGCGAGTTTGACAATGCGGGTGAGT-GCTAA-------TCT-----------------------TTGGACTTCAATC-TGACATATAC----------------CCCGATC-----T-------------------------------------------------ATGGGA--------------------ATATTTATTT-----------TAATATATA-----C--------------------------CTGAGCGTTGATCT----CTCAGATAACCC--------------------GTC-ACAAGTGAA-AGCTGGC--------------AATCAGATTTAATTTTAATTTGTCATT--------------------------TACGAATTGCGCATTTCGA--------A-TTGTTCAATT---AATA-------GATCGGGA------------------CGTCA--C-TTAATT--GATG-AAATAATTAATTCATTTTGAAACAC-TT------TCGCAGGTGCCATGATGTCCGTGGACGACACACTGATGTGCTCATTTCAGATATTG
droBip1 scf7180000396413:445715-446045 + GGTGACGCTCTTCTCAGCGCCCAACTATTGCGGCGAGTTTGACAATGCGGGTGAGT-GCTAA-------TCT-----------------------TTGGACTTCAGTC-CGAGATATAC----------------CCCGATC-----T-------------------------------------------------ATGGGA--------------------ATAATT-TTT-----------AAATATATAC-------------------------------CTCAGGGTTGATCT----CTCAGATAACCC--------------------GTC-ACAAGTGAA-AGCTGGC--------------AATCAGATTCAATTTTAAACTGTCATT--------------------------TACGAAATGCGCATTTCGT--------T-G--TTCAAT---TAATA-------GATCGGGA------------------CGTCA--C-TTAATT--GATG-ATTTAATTAATGCCTTTTTAAACAT-TT------TTGTAGGTGCCATGATGTCCGTGGACGACACACTTATGTGCTCATTTCAGATATTG
dp5 2:18446462-18446846 - GGTCACGCTCTTCTCGGCGCCCAACTATTGCGGGGAATTCGACAATGCGGGTGAGTTGATTG-AC------AA---C-TGACGCGAGTGTGCACGCTGGACTTCAGTCCGGAGATAATCTTATCTGAATTATTGTCTTGTTT-----GTCTTGGG----------------------------------GA--------------------------------------GAGTAAACGGGGAGGAAACGCGTCCCACA-A------------------------GGTTATCGCTGATCC----CAGAGATACGC-------ACAGCTGGCGCAGCGTCGCCAAGTGAA-AGCTGAATACTGAAATCTGAACACCCGCCTCGATTTT-------CATG--------------------------CGCCAACTGCGCATTTGATTCCATGCC----------------------------------------------------------------TTTAAAAGG-AATTGAT-----CATATTTCTGTGC-GTCTGTTATTACAGGTGCAATGATGTCCGTTGACGACACTCTGATGTGCTCCTTCCAGATATTG
droPer2 scaffold_3:1169967-1170351 - GGTCACGCTCTTCTCGGCGCCCAACTATTGCGGGGAATTCGACAATGCGGGTGAGTTGATTG-AC------AA---C-TGACGCGAGTGTGCACGCTGGACTTCAGTCCGGAGATAATCTTATCTGAATTATTGTCTTGTTT-----GTCTTGGG----------------------------------GA--------------------------------------GAGTAAACGGGGAGGAAACGCGTCCCACA-A------------------------GGTTATCGCTGATCC----CAGAGATACGC-------ACAGCTGGCGCAGCGTCGCCAAGTGAA-AGCTGAATACTGAAATCTGAACACCCGCCACGATTTT-------CATG--------------------------CGCCAACTGCGCATTTGATTCCATGCC----------------------------------------------------------------TTTAAAAGG-AATTGAT-----CATATTTCTGTGC-GTCTGTTATTACAGGTGCAATGATGTCCGTTGACGACACTCTGATGTGCTCCTTCCAGATATTG
droWil2 scf2_1100000004921:4347346-4347689 - AGTTACGCTATTCTCAGCGCCCAACTATTGCGGAGAATTTGACAATGCGGGTGAGTTAATCA----------T---TA-----------------TCGGTCATCAGTT-GAAA-----------------------TTGTGT-----GGGT-GGATGCATGAATAGGGCATGATCCATTCAAATAAACAAAATGCCA---------------------------------------------------T---GTGGACTTGAGACTCATCTCTTAATCTCAAAATGTGAA----------------TGATAACCCTTTTGCGCCCTTGAGATAACGTCATCTTGGGATTTGCTACTGACTGCTACTGAG----------------------------------------------------------------------------------------------------------------ATAATCGTCC-CACCTATCTATCTCT--C-TCTCAT----------------AT-TGTTGTTGTTGTT-GT------TTACAGGTGCCATGATGTCCGTGGACGACACATTAATGTGCTCATTTCAGATATTG
droVir3 scaffold_13047:3722194-3722258 + ----------------------------------------------------------------------------------------------------------------------------------------TTGTTT-----AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TCATAGGTGCCATGATGTCCGTGGATGACACATTGATGTGCTCCTTTCAGATATTG
droMoj3 scaffold_6540:20735499-20735562 + TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-CT------TCAAAGGTGCCATGATGTCCGTGGACGACACATTAATGTGCTCCTTTCAGATTTTG
droGri2 scaffold_14906:381814-381885 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGGTTGTCTT-AT------TTATAGGTGCCATGATGTCCGTTGACGACACATTAATGTGCTCCTTTCAGATATTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GATCA-------TCATTGTTC-----------------GGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACAACC---------------------------------------------------ACGTTGCACCCT------------------------TGTACTCGGTGATTTTGCCTACCGATAAGCT--------------------GTCGGCAAGTGAA-AGCTGAC--------------AACCAGATTTAATTTC-------AACT--------------------------CGGAAAATGCGCATTTGAA--------A-ATAATCAATAATCAA---------TACCGAGAATGAAAC-TACCTATGCACGACA--C-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTAC-GT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAATGAAAC-TACCTATG..................................................................................................................2011.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................CGGCAAGTGAA-AGCTGAC--------------AACC................................................................................................................................................................................................................................................2211.00100000100000000000
....ACGCTCTTCTCGGCGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.........................................................GATCA-------TCATTGTTC-----------------GGGGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
AGTGACGCTCTTCTCGGCGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................................................................................................TTTTGCCTACCGATAAGCT--------------------GT.....................................................................................................................................................................................................................................................................................2111.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTGGACGACAC.........................1720.50100000000001000000
droSec2
AGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GATCA-------TCATTGTTC-----------------GGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACAACC---------------------------------------------------GCGTTGCACCCT------------------------TGTACTCGGTGATTTTGCCTACCGATAAGCT--------------------GTCGGCAAGTGAA-AGCTGAC--------------AACCAGATTTAATTTC-------AACT--------------------------CGGAAAATGCGCATTTGAA--------A-ATAATCAATAATCAA---------TACCGAGAATGAAAC-TACCTATGCACGACA--C-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTAC-GT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................GTAAGT-GATCA-------TCATTGTTC-----------------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020101
............CTCGGCGCCCAACTACTGCGGGGAGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
..................................GAGTTCGACAACGCGGGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATGTGCTCCTTCCAGA.....2111.0010001
..........................................................................................................................................................................................................................................................................................................TTGCCTACCGATAAGCT--------------------GTCG...................................................................................................................................................................................................................................................................................2111.0010100
....................CCAACTACTGCGGGGAGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
dm3
GGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAATTCGACAACGCGGGTAAGT-GATCA-------TTGT---TC-----------------GGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACAACC---------------------------------------------------ACGTTGCACCCT------------------------TGTACTCGGTGATTTTGCCTGCCGATAAGCT--------------------GTCGGCAAGTGAA-AGCTGGC--------------AACCAGATTTAAATTC-------AACT--------------------------CGGAAAATGCGCATTTAAA--------A-ATAATCAATAATCAA---------TACCGAGAATGAAAC-TACCTATGCACGACA--C-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTAC-GT------TTACAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAT-CATTATTGATTAC-GT------TTACA...................................................2516.0060000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTCTCGGCGCCCAACTACTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2124.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTGCGGGGAATTCGACAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACACATTGATGTGCTCCTTCC........2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAT-CATTATTGATTAC-GT------TT......................................................2213.0030000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TACTGCGGGGAATTCGACAACGCGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CCAACTACTGCGGGGAATTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAT-CATTATTGATTAC-G...............................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAT-CATTATTGATTAC-GT------........................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGTGCTCCTTCCAGATA...2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..........................ACTGCGGGGAATTCGACAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATGTGCTCCTTCCAGA.....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCCGTGGACGACA..........................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGTGCTCCTTCCAGATAT..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--C-CCGCTTCTAATG-AATTG.....................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCGGGGAATTCGACAACGCGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TACTGCGGGGAATTCGACAACGCGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TACTGCGGGGAATTCGACAACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGGACGACACATTGATGTGCT..............2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCTCGGCGCCCAACTACTGCGGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AACTACTGCGGGGAATTCGACAACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGATGTCCGTGGACGACAC.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCGGGGAATTCGACAACGCGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTTTGCCTGCCGATAAGCT--------------------GT.....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGATGTCCGTGGACGACAC.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AACTACTGCGGGGAATTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCTCGGCGCCCAACTACTGCGGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAT-CATTATTGATTAC-GT------TTA.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGTGCCATGATGTCCGTG.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGATGTCCGTGGACGACA..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CT------------------------TGTACTCGGTGATTTTGCCTGCCG..................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCTTCTCGGCGCCCAACTACTGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................ACTGCGGGGAATTCGACAACGCGGGTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TTC-------AACT--------------------------CGGAAAATGCGCATT................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CATTATTGATTAC-GT------TTACAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACGCTCTTCTCGGCGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................ACTGCGGGGAATTCGACAACGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCGGCGCCCAACTACTGCGGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATGTGCTCCTTCCA.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CCGATAAGCT--------------------GTCGGCAAGTG............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACATTGATGTGCTCCTTCCA.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATAAGCT--------------------GTCGGCAAGTGAA-AGCTGG...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACTGCGGGGAATTCGACAACGCGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGATGTCCGTGGACGA............................2111.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCTTCTCGGCGCCCAACTACTGCGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGATTAC-GT------TTACAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TACCTATGCACGACA--C-CCG....................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................TGCGGGGAATTCGACAACGCGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGATGTGCTCCTTCCA.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CTTCTCGGCGCCCAACTACTGCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCTCGGCGCCCAACTACTGCGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGATGTCCGTGGAC..............................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGATGTCCGTGGACGA............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATGATGTCCGTGGAC..............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGATGTCCGTGGAC..............................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GTTCA-------TCAT---GC-----------------GAGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----GTTT-GGA----------------------------------GAATAGCC---------------------------------------------------ATGAAGCACCCT------------------------TGTACTGTATGATTTTACCTACCGATAACCT--------------------GTCGGCAAGTGAA-AGCTGGC--------------AACCAGATTTAATTTC-------CACT--------------------------CGGAAAATGCGCATTTTAA--------A-ATAATCAATAATCAA---------TACCGAGAATGGCAC-AACTCATAAACGACAATC-CCGCTTCTAATG-AATTGATTAAT-CATTATTGATTGC-GT------TTACAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............TCGGCGCCCAACTACTGCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..........................ACTGCGGGGAGTTCGACAACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
............CTCGGCGCCCAACTACTGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTCCGTGGACGACA..........................2020.5010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTCCGTGGACGACAC.........................2120.5010100000
droYak3
GGTGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAGTTCGACAACGCGGGTAAGT-GTTCA-------TCGT---TC-----------------AGGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAATAACG---------------------------------------------------ATGATGCACCCT------------------------TGTACTGTATGATTTTGCCTGCCGATAACCT--------------------GTTGGCAAGTGAA-AGCTGGC--------------AACCAGATTTCATTTC-------CACT--------------------------CGGAAAATGCGCATTTTAG--------A-ATAATCAATAATCAA---------TACCGAGAATAGCACAAACCCATAAACGACA--AACCGCTTCTAATG-AATTGATTAAT-GATTATTGATTAC-GT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........CTTCTCGGCGCCCAACTACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................AACTACTGCGGGGAGTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000010000
droEug1
AGTGACGCTGTTCTCAGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTGAGT-GATCG-TCATCATAAT---TC-----------------CCGGACTTTAGTC-GGAGATAAAC----------------GTTGTTT-----ATTT-GGA----------------------------------GAATG---------------------------------------------------------------CCT------------------------TGTAATCGTTGATTATGACAACCGATAACCCGCCTGC------------CTGCCGGCAAGTGAA-AGCTGGC--------------AACCAGACCTAATTTC-------CTCT--------------------------CGGAAAATGCGCATTTTAA--------A-ATAATCAATAA-------------TGCCGAGAATAGACA-TGCCCATAAATGTCA--C-TCGATTCCAATG-AATTGATTAAT-CATTATCGATTAC-GT------TTATAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotal
No Reads
droBia1
GGTCACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTAAGT-GATCA-------TTAT---CC-----------------GCGGACTTTAGTC-GGAGATAA--------------------TGTTT-----ATTT-GGA----------------------------------GAATG---------------------------------------------------------------CCT------------------------CGTAATCATTGATTT----AACCGATAACCTGC-----------------CGCCGGCAAATGAA-TGCCGGC--------------AACCAGATTTAATTTC-------CACT--------------------------CGGAAAATGCGCATTTCAA--------A-ATAATCAAAAATCAA---------TACCGAGAATAGAAC-TGTCCATA-ATGTCA--C-TCGCCCCCGCTGAAAATGATTAAT-CACTATCGATTACGAT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotal
No Reads
droTak1
GGTGACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTGAGT-GATCA-ACGTGATCAT---CC-----------------GCGGACTTTAGTC-GGCGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAACGACTACG--------------------------------------------------GGAGCACCCT------------------------TGTAATCGTTGACTT----AACCGATAACCT--------------------GCCGGCAAGTGAA-AGCTGGC--------------AGCCACATTTAATTTC-------CACT----------------------CG--CGGAAAATGCGCATTTTAA--------AAATAATCAATAATCAGTGGCGGGAATACCGAGAATAGAAC-TGCCCATAAATGTCA--CCTCGCTTGCTCCG-AACTGATTAAT-CATTATCGATTTCGTT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotal
No Reads
droEle1
GGTTACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTCGACAATGCGGGTGAGT-GATGA-------TCAT---GC-----------------GCGGACTTTAGCC-GGAGATTAAC----------------TTTGTTT-----ATTT-GGG----------------------------------CAAGGCTT---------------------------------------------------ATGAAGCACCCT------------------------TGTAATCGTTGAATT----AAGCGATAAGCT--------------------GCCGGCAAGTGAA-AGCTGAC--------------AGCCACATTAAATTTC-------CACA--------------------------TTGAAATTGCGCCTCTTAA--------A-ATAATCAATAAT-AA---------TACCTAGAATATAGC-GGACAATTATTGTCT--C-TCGCTTCCGCAA-AATTGATTAAT-TATTATCGATTAC-AT------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTTCAGATATTGSizeHit CountTotal NormTotal
No Reads
droRho1
GGTGACTCTCTTTTCGGCGCCCAATTATTGCGGGGAGTTCGACAATGCGGGTGAGT-GATGA-------TCAT---CC-----------------GCGGACTTTAGCC-GGAGATAAAC----------------TTTGTTT-----ATTT-GAA----------------------------------GAAGGCTG---------------------------------------------------GTGAAGCAGCCT------------------------TGTAATCGTTGATTT----CCGTGATAACCT--------------------GCCGGCAAGTGAA-AGCTGAC--------------AGACAGATTGAATTTC-------CACT--------------------------CTGAAATTGCGCATTTTAA--------A-ATAATCAATAATCAA---------TACCGAGAATAGAAC-TGCCCATAAATGTCA--C-TTGCTTCCACTG-AATTGATTAAT-CATTATCGATTAC-GT------TTCCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotal
No Reads
droFic1
GGTGACGCTCTTCTCGGCGCCCAACTATTGCGGGGAGTTTGACAATGCGGGTGAGT-GATGAGTGATGATCAG---CT-----------------GCGGACTTTAGTC-GGAGATAAAC----------------CTTGTTT-----ATTT-GGA----------------------------------GAATGCCC---------------------------------------------------A---AAGACCCT------------------------TGGAATCGTTGATCA----GTGCGATAACCG--------------------GCCGGCAAATAAA-AGCTGCC--------------AGCCCGGTTGCATTTC-------CATG--------------------------CGGGAAATGCGCATTTAAA--------A-ATAATCAATAATCAA---------TACCGGGAATAGAGC-AGCCCATAAATGTCA--C-TCCCTTCCCTAG-AAGTGATTAAT-CATTATCGATTTC-GC------TTGCAGGTGCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotal
No Reads
droKik1
GGTCACGCTCTTCTCGGCGCCTAACTATTGCGGGGAATTTGACAATGCGGGTGAGT-GATCA-------TCGA---CG-----------------ATGGACTTCAGTCCGGAGATAAAC----------------ATTATCTCGACAC-------------------------------------------------AAGGCACCCTTTACGGTCGTCTATAAATATAAAAATAAACACGG-----------A-------------------------------GGTCAACGTTGATCT----CGGAGATAGGCC--------------------AGAAGCAAGTGAA-AGCTAGC--------------AACCAGATTCCATTGC-------CATTTCCATTCCCGTTTATTTCCACTTACCAAGAAAATGCGCACTTTAA--------A-A-----AATAATCAA---------TAGCGGGAATCG-------CCATAAATGTCA---------------G-CAATGATTAAT-CATTATCGATTGG-CT------TTGCAGGTGCCATGATGTCCGTGGACGACACACTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotal
No Reads
droAna3
GGTGACGCTCTTCTCAGCGCCCAACTATTGCGGCGAGTTTGACAATGCGGGTGAGT-GCTAA-------TCT-----------------------TTGGACTTCAATC-TGACATATAC----------------CCCGATC-----T-------------------------------------------------ATGGGA--------------------ATATTTATTT-----------TAATATATA-----C--------------------------CTGAGCGTTGATCT----CTCAGATAACCC--------------------GTC-ACAAGTGAA-AGCTGGC--------------AATCAGATTTAATTTTAATTTGTCATT--------------------------TACGAATTGCGCATTTCGA--------A-TTGTTCAATT---AATA-------GATCGGGA------------------CGTCA--C-TTAATT--GATG-AAATAATTAATTCATTTTGAAACAC-TT------TCGCAGGTGCCATGATGTCCGTGGACGACACACTGATGTGCTCATTTCAGATATTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCCATGATGTCCGTGGA...............................2011.001010000
.................................................................................................................................................................................................................................................................................................................CAGATAACCC--------------------GTC-ACAAGTGA...........................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGACACACTGATGTGCTCATTTCA.......2911.001100000
.................................................................................................................................................................................................................................................................................................................................................C-ACAAGTGAA-AGCTGGC--------------AATC................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTGGACGACACACTGA....................2111.001100000
...................................................................................................................................................................................................................................................................................................................GATAACCC--------------------GTC-ACAAGTGAA-AGCTGGC--------------....................................................................................................................................................................................................................................................2711.001010000
..........TTCTCAGCGCCCAACTATTGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..................................GAGTTTGACAATGCGGGTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................CTATTGCGGCGAGTTTGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................GTTTGACAATGCGGGTGAGT-GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................ATATA-----C--------------------------CTGAGCGTTGTA.............................................................................................................................................................................................................................................................................................................................1870.141001000
droBip1
GGTGACGCTCTTCTCAGCGCCCAACTATTGCGGCGAGTTTGACAATGCGGGTGAGT-GCTAA-------TCT-----------------------TTGGACTTCAGTC-CGAGATATAC----------------CCCGATC-----T-------------------------------------------------ATGGGA--------------------ATAATT-TTT-----------AAATATATAC-------------------------------CTCAGGGTTGATCT----CTCAGATAACCC--------------------GTC-ACAAGTGAA-AGCTGGC--------------AATCAGATTCAATTTTAAACTGTCATT--------------------------TACGAAATGCGCATTTCGT--------T-G--TTCAAT---TAATA-------GATCGGGA------------------CGTCA--C-TTAATT--GATG-ATTTAATTAATGCCTTTTTAAACAT-TT------TTGTAGGTGCCATGATGTCCGTGGACGACACACTTATGTGCTCATTTCAGATATTGSizeHit CountTotal NormTotal
No Reads
dp5
GGTCACGCTCTTCTCGGCGCCCAACTATTGCGGGGAATTCGACAATGCGGGTGAGTTGATTG-AC------AA---C-TGACGCGAGTGTGCACGCTGGACTTCAGTCCGGAGATAATCTTATCTGAATTATTGTCTTGTTT-----GTCTTGGG----------------------------------GA--------------------------------------GAGTAAACGGGGAGGAAACGCGTCCCACA-A------------------------GGTTATCGCTGATCC----CAGAGATACGC-------ACAGCTGGCGCAGCGTCGCCAAGTGAA-AGCTGAATACTGAAATCTGAACACCCGCCTCGATTTT-------CATG--------------------------CGCCAACTGCGCATTTGATTCCATGCC----------------------------------------------------------------TTTAAAAGG-AATTGAT-----CATATTTCTGTGC-GTCTGTTATTACAGGTGCAATGATGTCCGTTGACGACACTCTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................CTGAACACCCGCCTCGATTTT-------CATG--------------------------C..............................................................................................................................................................................................2611.0010100000000
.GTCACGCTCTTCTCGGCGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................GCCCAACTATTGCGGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGACACTCTGATGTGCTC.............2111.0010100000000
...............................GGGGAATTCGACAATGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..TCACGCTCTTCTCGGCGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGTCACGCTCTTCTCGGCGCCCAACTATTGCGGGGAATTCGACAATGCGGGTGAGTTGATTG-AC------AA---C-TGACGCGAGTGTGCACGCTGGACTTCAGTCCGGAGATAATCTTATCTGAATTATTGTCTTGTTT-----GTCTTGGG----------------------------------GA--------------------------------------GAGTAAACGGGGAGGAAACGCGTCCCACA-A------------------------GGTTATCGCTGATCC----CAGAGATACGC-------ACAGCTGGCGCAGCGTCGCCAAGTGAA-AGCTGAATACTGAAATCTGAACACCCGCCACGATTTT-------CATG--------------------------CGCCAACTGCGCATTTGATTCCATGCC----------------------------------------------------------------TTTAAAAGG-AATTGAT-----CATATTTCTGTGC-GTCTGTTATTACAGGTGCAATGATGTCCGTTGACGACACTCTGATGTGCTCCTTCCAGATATTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTGATGTGCTCCTTCCAG......2111.001010000
......................................................GTTGATTG-AC------AA---C-TGACGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGTGCAATGATGTCCGT..................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC----------------------------------------------------------------TTTAAAAGG-AATTGAT-----..............................................................................2011.001000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACTCTGATGTGCTCCT...........2011.001100000
droWil2
AGTTACGCTATTCTCAGCGCCCAACTATTGCGGAGAATTTGACAATGCGGGTGAGTTAATCA----------T---TA-----------------TCGGTCATCAGTT-GAAA-----------------------TTGTGT-----GGGT-GGATGCATGAATAGGGCATGATCCATTCAAATAAACAAAATGCCA---------------------------------------------------T---GTGGACTTGAGACTCATCTCTTAATCTCAAAATGTGAA----------------TGATAACCCTTTTGCGCCCTTGAGATAACGTCATCTTGGGATTTGCTACTGACTGCTACTGAG----------------------------------------------------------------------------------------------------------------ATAATCGTCC-CACCTATCTATCTCT--C-TCTCAT----------------AT-TGTTGTTGTTGTT-GT------TTACAGGTGCCATGATGTCCGTGGACGACACATTAATGTGCTCATTTCAGATATTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTCCGTGGACGACA..........................2011.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGTTGTTGTTGTT-GT------TTACAG..................................................2211.00100001
...............................................................................................................AA-----------------------TTGTGT-----GGGT-GGATGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
................................................................................................................................................................................................................................................................................................................................................TCATCTTGGGATTTGCTACTGACT..............................................................................................................................................................................................................................................................2411.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTTGTT-GT------TTACAG..................................................1911.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----------------AT-TGTTGTTGTTGTT-GT------C.......................................................21200.05100001
droVir3
----------------------------------------------------------------------------------------------------------------------------------------TTGTTT-----AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TCATAGGTGCCATGATGTCCGTGGATGACACATTGATGTGCTCCTTTCAGATATTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGATGACACATTGATGT.................2111.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGATGTCCGTGGATGA............................2111.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCCGTGGATGACACA........................2111.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-CT------TCAAAGGTGCCATGATGTCCGTGGACGACACATTAATGTGCTCCTTTCAGATTTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGGTTGTCTT-AT------TTATAGGTGCCATGATGTCCGTTGACGACACATTAATGTGCTCCTTTCAGATATTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACACATTAATGTGCTCC............2111.00110

Generated: 05/19/2015 at 12:48 AM